SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1044801 9pd4:N (3.4) BS02 ZN N/A GO:0000228 ... P27694 N/A
    1044802 9pd4:S (3.4) BS01 dna N/A GO:0000109 ... P28715 N/A
    1044803 9pd4:S (3.4) BS02 dna N/A GO:0000109 ... P28715 N/A
    1044804 9pd5:A (5.7) BS01 dna N/A GO:0000112 ... P19447 N/A
    1044805 9pd5:A (5.7) BS02 dna N/A GO:0000112 ... P19447 N/A
    1044806 9pd5:B (5.7) BS01 dna N/A GO:0000439 ... P18074 N/A
    1044807 9pd5:B (5.7) BS02 SF4 N/A GO:0000439 ... P18074 N/A
    1044808 9pd5:E (5.7) BS01 ZN N/A GO:0000438 ... Q13888 N/A
    1044809 9pd5:E (5.7) BS02 ZN N/A GO:0000438 ... Q13888 N/A
    1044810 9pd5:E (5.7) BS03 ZN N/A GO:0000438 ... Q13888 N/A
    1044811 9pd5:F (5.7) BS01 ZN N/A GO:0000438 ... Q13889 N/A
    1044812 9pd5:F (5.7) BS02 ZN N/A GO:0000438 ... Q13889 N/A
    1044813 9pd5:K (5.7) BS01 dna N/A GO:0000110 ... P23025 N/A
    1044814 9pd5:K (5.7) BS02 dna N/A GO:0000110 ... P23025 N/A
    1044815 9pd5:K (5.7) BS03 ZN N/A GO:0000110 ... P23025 N/A
    1044816 9pd8:A (4.23) BS01 ADP N/A GO:0000149 ... P18708 40993127
    1044817 9pd8:A (4.23) BS02 ATP N/A GO:0000149 ... P18708 40993127
    1044818 9pd8:B (4.23) BS01 ATP N/A GO:0000149 ... P18708 40993127
    1044819 9pd8:B (4.23) BS02 ADP N/A GO:0000149 ... P18708 40993127
    1044820 9pd8:B (4.23) BS03 ADP N/A GO:0000149 ... P18708 40993127
    1044821 9pd8:C (4.23) BS01 peptide N/A GO:0000149 ... P18708 40993127
    1044822 9pd8:C (4.23) BS02 ATP N/A GO:0000149 ... P18708 40993127
    1044823 9pd8:C (4.23) BS03 ADP N/A GO:0000149 ... P18708 40993127
    1044824 9pd8:D (4.23) BS01 peptide N/A GO:0000149 ... P18708 40993127
    1044825 9pd8:D (4.23) BS02 ATP N/A GO:0000149 ... P18708 40993127
    1044826 9pd8:D (4.23) BS03 ADP N/A GO:0000149 ... P18708 40993127
    1044827 9pd8:D (4.23) BS04 ATP N/A GO:0000149 ... P18708 40993127
    1044828 9pd8:E (4.23) BS01 peptide N/A GO:0000149 ... P18708 40993127
    1044829 9pd8:E (4.23) BS02 ATP N/A GO:0000149 ... P18708 40993127
    1044830 9pd8:E (4.23) BS03 ATP N/A GO:0000149 ... P18708 40993127
    1044831 9pd8:F (4.23) BS01 ATP N/A GO:0000149 ... P18708 40993127
    1044832 9pd8:F (4.23) BS02 ADP N/A GO:0000149 ... P18708 40993127
    1044833 9pda:A (1.18) BS01 CA N/A GO:0004252 ... P00761 N/A
    1044834 9pda:B (1.18) BS01 PMA N/A GO:0004252 ... P00761 N/A
    1044835 9pda:B (1.18) BS02 CA N/A GO:0004252 ... P00761 N/A
    1044836 9pda:C (1.18) BS01 CA N/A GO:0004252 ... P00761 N/A
    1044837 9pda:C (1.18) BS02 CA N/A GO:0004252 ... P00761 N/A
    1044838 9pda:D (1.18) BS01 PMA N/A GO:0004252 ... P00761 N/A
    1044839 9pda:D (1.18) BS02 CA N/A GO:0004252 ... P00761 N/A
    1044840 9pda:D (1.18) BS03 CA N/A GO:0004252 ... P00761 N/A
    1044841 9pdb:A (3.83) BS01 ATP N/A GO:0000149 ... P18708 40993127
    1044842 9pdb:A (3.83) BS02 ADP N/A GO:0000149 ... P18708 40993127
    1044843 9pdb:B (3.83) BS01 ATP N/A GO:0000149 ... P18708 40993127
    1044844 9pdb:B (3.83) BS02 ADP N/A GO:0000149 ... P18708 40993127
    1044845 9pdb:C (3.83) BS01 ATP N/A GO:0000149 ... P18708 40993127
    1044846 9pdb:C (3.83) BS02 ADP N/A GO:0000149 ... P18708 40993127
    1044847 9pdb:D (3.83) BS01 ATP N/A GO:0000149 ... P18708 40993127
    1044848 9pdb:D (3.83) BS02 ADP N/A GO:0000149 ... P18708 40993127
    1044849 9pdb:E (3.83) BS01 ATP N/A GO:0000149 ... P18708 40993127
    1044850 9pdb:E (3.83) BS02 ATP N/A GO:0000149 ... P18708 40993127
    1044851 9pdb:F (3.83) BS01 ATP N/A GO:0000149 ... P18708 40993127
    1044852 9pdb:F (3.83) BS02 ADP N/A GO:0000149 ... P18708 40993127
    1044853 9pdd:A (4.16) BS01 peptide N/A GO:0000149 ... P18708 40993127
    1044854 9pdd:A (4.16) BS02 ADP N/A GO:0000149 ... P18708 40993127
    1044855 9pdd:A (4.16) BS03 ATP N/A GO:0000149 ... P18708 40993127
    1044856 9pdd:B (4.16) BS01 ATP N/A GO:0000149 ... P18708 40993127
    1044857 9pdd:B (4.16) BS02 ADP N/A GO:0000149 ... P18708 40993127
    1044858 9pdd:C (4.16) BS01 ATP N/A GO:0000149 ... P18708 40993127
    1044859 9pdd:C (4.16) BS02 ADP N/A GO:0000149 ... P18708 40993127
    1044860 9pdd:D (4.16) BS01 peptide N/A GO:0000149 ... P18708 40993127
    1044861 9pdd:D (4.16) BS02 ATP N/A GO:0000149 ... P18708 40993127
    1044862 9pdd:D (4.16) BS03 ADP N/A GO:0000149 ... P18708 40993127
    1044863 9pdd:D (4.16) BS04 ATP N/A GO:0000149 ... P18708 40993127
    1044864 9pdd:E (4.16) BS01 peptide N/A GO:0000149 ... P18708 40993127
    1044865 9pdd:E (4.16) BS02 ATP N/A GO:0000149 ... P18708 40993127
    1044866 9pdd:E (4.16) BS03 ATP N/A GO:0000149 ... P18708 40993127
    1044867 9pdd:F (4.16) BS01 ATP N/A GO:0000149 ... P18708 40993127
    1044868 9pdd:F (4.16) BS02 ADP N/A GO:0000149 ... P18708 40993127
    1044869 9pdh:A (2.5) BS01 NAD N/A GO:0004013 ... Q27580 40971386
    1044870 9pdh:A (2.5) BS02 ADN N/A GO:0004013 ... Q27580 40971386
    1044871 9pdh:A (2.5) BS03 NAD N/A GO:0004013 ... Q27580 40971386
    1044872 9pdh:B (2.5) BS01 NAD N/A GO:0004013 ... Q27580 40971386
    1044873 9pdh:B (2.5) BS02 ADN N/A GO:0004013 ... Q27580 40971386
    1044874 9pdh:B (2.5) BS03 NAD N/A GO:0004013 ... Q27580 40971386
    1044875 9pdh:C (2.5) BS01 NAD N/A GO:0004013 ... Q27580 40971386
    1044876 9pdh:C (2.5) BS02 NAD N/A GO:0004013 ... Q27580 40971386
    1044877 9pdh:C (2.5) BS03 ADN N/A GO:0004013 ... Q27580 40971386
    1044878 9pdh:D (2.5) BS01 NAD N/A GO:0004013 ... Q27580 40971386
    1044879 9pdh:D (2.5) BS02 NAD N/A GO:0004013 ... Q27580 40971386
    1044880 9pdi:A (2.98) BS01 peptide N/A GO:0000502 ... P35998 41198955
    1044881 9pdi:A (2.98) BS02 ADP N/A GO:0000502 ... P35998 41198955
    1044882 9pdi:B (2.98) BS01 peptide N/A GO:0000502 ... P62191 41198955
    1044883 9pdi:B (2.98) BS02 ATP N/A GO:0000502 ... P62191 41198955
    1044884 9pdi:B (2.98) BS03 MG N/A GO:0000502 ... P62191 41198955
    1044885 9pdi:C (2.98) BS01 peptide N/A GO:0000502 ... P62195 41198955
    1044886 9pdi:C (2.98) BS02 ATP N/A GO:0000502 ... P62195 41198955
    1044887 9pdi:C (2.98) BS03 MG N/A GO:0000502 ... P62195 41198955
    1044888 9pdi:C (2.98) BS04 ATP N/A GO:0000502 ... P62195 41198955
    1044889 9pdi:D (2.98) BS01 peptide N/A GO:0000502 ... P43686 41198955
    1044890 9pdi:D (2.98) BS02 ATP N/A GO:0000502 ... P43686 41198955
    1044891 9pdi:D (2.98) BS03 ADP N/A GO:0000502 ... P43686 41198955
    1044892 9pdi:E (2.98) BS01 peptide N/A GO:0000502 ... P62333 41198955
    1044893 9pdi:E (2.98) BS02 ADP N/A GO:0000502 ... P62333 41198955
    1044894 9pdi:F (2.98) BS01 ADP N/A GO:0000502 ... P17980 41198955
    1044895 9pdi:c (2.98) BS01 ZN N/A GO:0000502 ... O00487 41198955
    1044896 9pdl:A (2.76) BS01 ATP N/A GO:0000502 ... P35998 41198955
    1044897 9pdl:A (2.76) BS02 ATP N/A GO:0000502 ... P35998 41198955
    1044898 9pdl:B (2.76) BS01 peptide N/A GO:0000502 ... P62191 41198955
    1044899 9pdl:B (2.76) BS02 ATP N/A GO:0000502 ... P62191 41198955
    1044900 9pdl:B (2.76) BS03 ATP N/A GO:0000502 ... P62191 41198955
    1044901 9pdl:C (2.76) BS01 peptide N/A GO:0000502 ... P62195 41198955
    1044902 9pdl:C (2.76) BS02 ADP N/A GO:0000502 ... P62195 41198955
    1044903 9pdl:C (2.76) BS03 ATP N/A GO:0000502 ... P62195 41198955
    1044904 9pdl:D (2.76) BS01 peptide N/A GO:0000502 ... P43686 41198955
    1044905 9pdl:D (2.76) BS02 ADP N/A GO:0000502 ... P43686 41198955
    1044906 9pdl:D (2.76) BS03 MG N/A GO:0000502 ... P43686 41198955
    1044907 9pdl:E (2.76) BS01 ADP N/A GO:0000502 ... P62333 41198955
    1044908 9pdl:F (2.76) BS01 ATP N/A GO:0000502 ... P17980 41198955
    1044909 9pdl:c (2.76) BS01 ZN N/A GO:0000502 ... O00487 41198955
    1044910 9pdn:A (3.04) BS01 peptide N/A GO:0000502 ... P35998 41198955
    1044911 9pdn:A (3.04) BS02 ATP N/A GO:0000502 ... P35998 41198955
    1044912 9pdn:A (3.04) BS03 ATP N/A GO:0000502 ... P35998 41198955
    1044913 9pdn:B (3.04) BS01 peptide N/A GO:0000502 ... P62191 41198955
    1044914 9pdn:B (3.04) BS02 ATP N/A GO:0000502 ... P62191 41198955
    1044915 9pdn:B (3.04) BS03 ATP N/A GO:0000502 ... P62191 41198955
    1044916 9pdn:C (3.04) BS01 peptide N/A GO:0000502 ... P62195 41198955
    1044917 9pdn:C (3.04) BS02 ATP N/A GO:0000502 ... P62195 41198955
    1044918 9pdn:C (3.04) BS03 MG N/A GO:0000502 ... P62195 41198955
    1044919 9pdn:C (3.04) BS04 ATP N/A GO:0000502 ... P62195 41198955
    1044920 9pdn:D (3.04) BS01 ATP N/A GO:0000502 ... P43686 41198955
    1044921 9pdn:D (3.04) BS02 ADP N/A GO:0000502 ... P43686 41198955
    1044922 9pdn:D (3.04) BS03 MG N/A GO:0000502 ... P43686 41198955
    1044923 9pdn:E (3.04) BS01 peptide N/A GO:0000502 ... P62333 41198955
    1044924 9pdn:E (3.04) BS02 ADP N/A GO:0000502 ... P62333 41198955
    1044925 9pdn:F (3.04) BS01 ATP N/A GO:0000502 ... P17980 41198955
    1044926 9pdn:F (3.04) BS02 MG N/A GO:0000502 ... P17980 41198955
    1044927 9pdn:c (3.04) BS01 ZN N/A GO:0000502 ... O00487 41198955
    1044928 9pdq:A (2.72) BS01 NA N/A GO:0005515 ... O76082 41318751
    1044929 9pdq:A (2.72) BS02 152 N/A GO:0005515 ... O76082 41318751
    1044930 9pe7:A (2.05) BS01 A1CIF N/A GO:0000082 ... Q00534 41347260
    1044931 9pe8:A (1.8) BS01 A1AZ4 N/A GO:0000082 ... Q00534 41347260
    1044932 9pe9:A (2.11) BS01 A1CIF N/A N/A P49841 41347260
    1044933 9pe9:B (2.11) BS01 A1CIF N/A N/A P49841 41347260
    1044934 9peb:A (3.13) BS01 SAH N/A GO:0003677 ... P34881 41082549
    1044935 9peb:A (3.13) BS02 ZN N/A GO:0003677 ... P34881 41082549
    1044936 9pec:A (3.29) BS01 ZN N/A GO:0003677 ... P34881 41082549
    1044937 9pec:A (3.29) BS02 SAH N/A GO:0003677 ... P34881 41082549
    1044938 9ped:A (2.9) BS01 dna N/A GO:0003682 ... P34881 41082549
    1044939 9ped:A (2.9) BS02 dna N/A GO:0003682 ... P34881 41082549
    1044940 9ped:A (2.9) BS03 ZN N/A GO:0003682 ... P34881 41082549
    1044941 9pee:A (3.35) BS01 A1A1W N/A GO:0004930 ... N/A 40977184
    1044942 9pee:A (3.35) BS02 A1CH1 N/A GO:0004930 ... N/A 40977184
    1044943 9peo:D (2.57) BS01 ADP N/A GO:0000076 ... P40348 41231947
    1044944 9peo:E (2.57) BS01 GDP N/A GO:0000077 ... P38251 41231947
    1044945 9per:D (2.57) BS01 ADP N/A GO:0000076 ... P40348 41231947
    1044946 9per:E (2.57) BS01 GDP N/A GO:0000077 ... P38251 41231947
    1044947 9pes:D (2.59) BS01 ADP N/A GO:0000076 ... P40348 41231947
    1044948 9pes:E (2.59) BS01 GDP N/A GO:0000077 ... P38251 41231947
    1044949 9pet:C (2.57) BS01 ADP N/A GO:0000077 ... P38629 41231947
    1044950 9pet:D (2.57) BS01 ADP N/A GO:0000076 ... P40348 41231947
    1044951 9pet:E (2.57) BS01 GDP N/A GO:0000077 ... P38251 41231947
    1044952 9peu:C (2.62) BS01 ADP N/A GO:0000077 ... P38629 41231947
    1044953 9peu:D (2.62) BS01 ADP N/A GO:0000076 ... P40348 41231947
    1044954 9peu:E (2.62) BS01 GDP N/A GO:0000077 ... P38251 41231947
    1044955 9pev:C (2.63) BS01 ADP N/A GO:0000077 ... P38629 41231947
    1044956 9pev:D (2.63) BS01 ADP N/A GO:0000076 ... P40348 41231947
    1044957 9pev:E (2.63) BS01 GDP N/A GO:0000077 ... P38251 41231947
    1044958 9pf1:A (3.57) BS01 peptide N/A GO:0000502 ... P35998 41198955
    1044959 9pf1:A (3.57) BS02 ADP N/A GO:0000502 ... P35998 41198955
    1044960 9pf1:A (3.57) BS03 ATP N/A GO:0000502 ... P35998 41198955
    1044961 9pf1:B (3.57) BS01 ADP N/A GO:0000502 ... P62191 41198955
    1044962 9pf1:C (3.57) BS01 ADP N/A GO:0000502 ... P62195 41198955
    1044963 9pf1:D (3.57) BS01 ADP N/A GO:0000502 ... P43686 41198955
    1044964 9pf1:E (3.57) BS01 peptide N/A GO:0000502 ... P62333 41198955
    1044965 9pf1:E (3.57) BS02 ATP N/A GO:0000502 ... P62333 41198955
    1044966 9pf1:F (3.57) BS01 peptide N/A GO:0000502 ... P17980 41198955
    1044967 9pf1:F (3.57) BS02 ATP N/A GO:0000502 ... P17980 41198955
    1044968 9pf1:F (3.57) BS03 ATP N/A GO:0000502 ... P17980 41198955
    1044969 9pf1:F (3.57) BS04 MG N/A GO:0000502 ... P17980 41198955
    1044970 9pf1:c (3.57) BS01 ZN N/A GO:0000502 ... O00487 41198955
    1044971 9pf2:A (3.88) BS01 ADP N/A GO:0000149 ... P18708 40993127
    1044972 9pf2:A (3.88) BS02 ATP N/A GO:0000149 ... P18708 40993127
    1044973 9pf2:B (3.88) BS01 ADP N/A GO:0000149 ... P18708 40993127
    1044974 9pf2:B (3.88) BS02 ATP N/A GO:0000149 ... P18708 40993127
    1044975 9pf2:C (3.88) BS01 ADP N/A GO:0000149 ... P18708 40993127
    1044976 9pf2:C (3.88) BS02 ATP N/A GO:0000149 ... P18708 40993127
    1044977 9pf2:D (3.88) BS01 ADP N/A GO:0000149 ... P18708 40993127
    1044978 9pf2:D (3.88) BS02 ATP N/A GO:0000149 ... P18708 40993127
    1044979 9pf2:E (3.88) BS01 ADP N/A GO:0000149 ... P18708 40993127
    1044980 9pf2:E (3.88) BS02 ATP N/A GO:0000149 ... P18708 40993127
    1044981 9pf2:F (3.88) BS01 ADP N/A GO:0000149 ... P18708 40993127
    1044982 9pf2:F (3.88) BS02 ATP N/A GO:0000149 ... P18708 40993127
    1044983 9pfb:A (3.06) BS01 X8M N/A GO:0005515 ... O76082 41318751
    1044984 9pfb:A (3.06) BS02 NA N/A GO:0005515 ... O76082 41318751
    1044985 9pfc:A (3.15) BS01 ATP N/A GO:0000149 ... P18708 40993127
    1044986 9pfc:A (3.15) BS02 ADP N/A GO:0000149 ... P18708 40993127
    1044987 9pfc:B (3.15) BS01 ADP N/A GO:0000149 ... P18708 40993127
    1044988 9pfc:B (3.15) BS02 ATP N/A GO:0000149 ... P18708 40993127
    1044989 9pfc:C (3.15) BS01 ADP N/A GO:0000149 ... P18708 40993127
    1044990 9pfc:C (3.15) BS02 ATP N/A GO:0000149 ... P18708 40993127
    1044991 9pfc:D (3.15) BS01 ADP N/A GO:0000149 ... P18708 40993127
    1044992 9pfc:D (3.15) BS02 ATP N/A GO:0000149 ... P18708 40993127
    1044993 9pfc:E (3.15) BS01 ADP N/A GO:0000149 ... P18708 40993127
    1044994 9pfc:E (3.15) BS02 ATP N/A GO:0000149 ... P18708 40993127
    1044995 9pfc:F (3.15) BS01 ATP N/A GO:0000149 ... P18708 40993127
    1044996 9pfc:F (3.15) BS02 ATP N/A GO:0000149 ... P18708 40993127
    1044997 9pfd:A (2.008) BS01 peptide N/A N/A Q9H9A7 40479515
    1044998 9pfd:B (2.008) BS01 peptide N/A GO:0000724 ... Q96E14 40479515
    1044999 9pff:A (3.09) BS01 ATP N/A GO:0000149 ... P18708 40993127
    1045000 9pff:A (3.09) BS02 ADP N/A GO:0000149 ... P18708 40993127

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).