SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1045001 9pff:B (3.09) BS01 ATP N/A GO:0000149 ... P18708 40993127
    1045002 9pff:B (3.09) BS02 ATP N/A GO:0000149 ... P18708 40993127
    1045003 9pff:C (3.09) BS01 ATP N/A GO:0000149 ... P18708 40993127
    1045004 9pff:C (3.09) BS02 ATP N/A GO:0000149 ... P18708 40993127
    1045005 9pff:D (3.09) BS01 ATP N/A GO:0000149 ... P18708 40993127
    1045006 9pff:D (3.09) BS02 ATP N/A GO:0000149 ... P18708 40993127
    1045007 9pff:E (3.09) BS01 ATP N/A GO:0000149 ... P18708 40993127
    1045008 9pff:E (3.09) BS02 ATP N/A GO:0000149 ... P18708 40993127
    1045009 9pff:F (3.09) BS01 ATP N/A GO:0000149 ... P18708 40993127
    1045010 9pfh:A (2.69) BS01 WZK N/A GO:0008233 ... P0DTC1 40459233
    1045011 9pfh:B (2.69) BS01 WZK N/A GO:0008233 ... P0DTC1 40459233
    1045012 9pfl:A (1.65) BS01 A1CH2 N/A GO:0001822 ... P15428 40864846
    1045013 9pfl:A (1.65) BS02 NAD N/A GO:0001822 ... P15428 40864846
    1045014 9pfl:B (1.65) BS01 A1CH2 N/A GO:0001822 ... P15428 40864846
    1045015 9pfl:B (1.65) BS02 NAD N/A GO:0001822 ... P15428 40864846
    1045016 9pfm:A (1.88) BS01 NAD N/A GO:0001822 ... P15428 40864846
    1045017 9pfm:A (1.88) BS02 SWL N/A GO:0001822 ... P15428 40864846
    1045018 9pfn:A (2.79) BS01 dna N/A GO:0000981 ... Q9UKI9 41260223
    1045019 9pfn:A (2.79) BS02 dna N/A GO:0000981 ... Q9UKI9 41260223
    1045020 9pfn:B (2.79) BS01 dna N/A GO:0003677 ... A8K830 41260223
    1045021 9pfn:E (2.79) BS01 peptide N/A GO:0000981 ... Q9UKI9 41260223
    1045022 9pfn:E (2.79) BS02 dna N/A GO:0000981 ... Q9UKI9 41260223
    1045023 9pfn:E (2.79) BS03 dna N/A GO:0000981 ... Q9UKI9 41260223
    1045024 9pfo:A (2.1) BS01 peptide N/A GO:0000981 ... Q9UKI9 41260223
    1045025 9pfo:A (2.1) BS02 dna N/A GO:0000981 ... Q9UKI9 41260223
    1045026 9pfo:A (2.1) BS03 dna N/A GO:0000981 ... Q9UKI9 41260223
    1045027 9pfo:E (2.1) BS01 peptide N/A GO:0000981 ... Q9UKI9 41260223
    1045028 9pfo:E (2.1) BS02 dna N/A GO:0000981 ... Q9UKI9 41260223
    1045029 9pfo:E (2.1) BS03 dna N/A GO:0000981 ... Q9UKI9 41260223
    1045030 9pfo:I (2.1) BS01 peptide N/A GO:0000981 ... Q9UKI9 41260223
    1045031 9pfo:I (2.1) BS02 dna N/A GO:0000981 ... Q9UKI9 41260223
    1045032 9pfo:I (2.1) BS03 dna N/A GO:0000981 ... Q9UKI9 41260223
    1045033 9pfo:M (2.1) BS01 peptide N/A GO:0000981 ... Q9UKI9 41260223
    1045034 9pfo:M (2.1) BS02 dna N/A GO:0000981 ... Q9UKI9 41260223
    1045035 9pfo:M (2.1) BS03 dna N/A GO:0000981 ... Q9UKI9 41260223
    1045036 9pfp:A (1.7) BS01 peptide N/A GO:0000981 ... Q9UKI9 41260223
    1045037 9pfp:A (1.7) BS02 dna N/A GO:0000981 ... Q9UKI9 41260223
    1045038 9pfp:A (1.7) BS03 dna N/A GO:0000981 ... Q9UKI9 41260223
    1045039 9pfp:A (1.7) BS04 peptide N/A GO:0000981 ... Q9UKI9 41260223
    1045040 9pfp:E (1.7) BS01 peptide N/A GO:0000981 ... Q9UKI9 41260223
    1045041 9pfp:E (1.7) BS02 dna N/A GO:0000981 ... Q9UKI9 41260223
    1045042 9pfp:E (1.7) BS03 dna N/A GO:0000981 ... Q9UKI9 41260223
    1045043 9pfq:C (4.24) BS01 dna N/A N/A N/A N/A
    1045044 9pfq:C (4.24) BS02 dna N/A N/A N/A N/A
    1045045 9pfq:D (4.24) BS01 dna N/A N/A N/A N/A
    1045046 9pfq:D (4.24) BS02 dna N/A N/A N/A N/A
    1045047 9pfq:D (4.24) BS03 MG N/A N/A N/A N/A
    1045048 9pfq:D (4.24) BS04 ZN N/A N/A N/A N/A
    1045049 9pfq:D (4.24) BS05 ZN N/A N/A N/A N/A
    1045050 9pfq:F (4.24) BS01 dna N/A N/A N/A N/A
    1045051 9pfq:F (4.24) BS02 dna N/A N/A N/A N/A
    1045052 9pfq:Q (4.24) BS01 dna N/A N/A N/A N/A
    1045053 9pfq:Q (4.24) BS02 dna N/A N/A N/A N/A
    1045054 9pfq:Q (4.24) BS03 dna N/A N/A N/A N/A
    1045055 9pfq:R (4.24) BS01 dna N/A N/A N/A N/A
    1045056 9pfq:R (4.24) BS02 dna N/A N/A N/A N/A
    1045057 9pfv:C (3.7) BS01 dna N/A N/A N/A N/A
    1045058 9pfv:C (3.7) BS02 dna N/A N/A N/A N/A
    1045059 9pfv:D (3.7) BS01 dna N/A N/A N/A N/A
    1045060 9pfv:D (3.7) BS02 MG N/A N/A N/A N/A
    1045061 9pfv:D (3.7) BS03 ZN N/A N/A N/A N/A
    1045062 9pfv:F (3.7) BS01 dna N/A N/A N/A N/A
    1045063 9pfv:Q (3.7) BS01 dna N/A N/A N/A N/A
    1045064 9pfv:Q (3.7) BS02 dna N/A N/A N/A N/A
    1045065 9pfv:Q (3.7) BS03 dna N/A N/A N/A N/A
    1045066 9pfv:R (3.7) BS01 dna N/A N/A N/A N/A
    1045067 9pfv:R (3.7) BS02 dna N/A N/A N/A N/A
    1045068 9pfv:R (3.7) BS03 dna N/A N/A N/A N/A
    1045069 9pfy:A (1.42) BS01 ATP N/A GO:0004550 ... Q5CR64 N/A
    1045070 9pfy:C (1.42) BS01 ATP N/A GO:0004550 ... Q5CR64 N/A
    1045071 9pg0:A (1.45) BS01 AMP N/A GO:0004550 ... Q5CR64 N/A
    1045072 9pg0:A (1.45) BS02 AMP N/A GO:0004550 ... Q5CR64 N/A
    1045073 9pg0:B (1.45) BS01 AMP N/A GO:0004550 ... Q5CR64 N/A
    1045074 9pg0:C (1.45) BS01 AMP N/A GO:0004550 ... Q5CR64 N/A
    1045075 9pg6:A (2.15) BS01 NAD N/A GO:0006006 ... Q7VZB9 N/A
    1045076 9pg6:B (2.15) BS01 NAD N/A GO:0006006 ... Q7VZB9 N/A
    1045077 9pg6:C (2.15) BS01 NAD N/A GO:0006006 ... Q7VZB9 N/A
    1045078 9pg6:D (2.15) BS01 NAD N/A GO:0006006 ... Q7VZB9 N/A
    1045079 9pg6:E (2.15) BS01 NAD N/A GO:0006006 ... Q7VZB9 N/A
    1045080 9pg6:F (2.15) BS01 NAD N/A GO:0006006 ... Q7VZB9 N/A
    1045081 9pg6:G (2.15) BS01 NAD N/A GO:0006006 ... Q7VZB9 N/A
    1045082 9pg6:H (2.15) BS01 NAD N/A GO:0006006 ... Q7VZB9 N/A
    1045083 9pg8:0 (3.06) BS01 rna N/A N/A N/A 41663403
    1045084 9pg8:0 (3.06) BS02 ZN N/A N/A N/A 41663403
    1045085 9pg8:1 (3.06) BS01 rna N/A N/A N/A 41663403
    1045086 9pg8:2 (3.06) BS01 rna N/A N/A N/A 41663403
    1045087 9pg8:3 (3.06) BS01 rna N/A N/A N/A 41663403
    1045088 9pg8:4 (3.06) BS01 rna N/A N/A N/A 41663403
    1045089 9pg8:4 (3.06) BS02 ZN N/A N/A N/A 41663403
    1045090 9pg8:5 (3.06) BS01 rna N/A N/A N/A 41663403
    1045091 9pg8:6 (3.06) BS01 rna N/A N/A N/A 41663403
    1045092 9pg8:6 (3.06) BS02 rna N/A N/A N/A 41663403
    1045093 9pg8:8 (3.06) BS01 rna N/A N/A N/A 41663403
    1045094 9pg8:8 (3.06) BS02 rna N/A N/A N/A 41663403
    1045095 9pg8:8 (3.06) BS03 rna N/A N/A N/A 41663403
    1045096 9pg8:9 (3.06) BS01 rna N/A N/A N/A 41663403
    1045097 9pg8:A0 (3.06) BS01 rna N/A N/A N/A 41663403
    1045098 9pg8:A1 (3.06) BS01 rna N/A N/A N/A 41663403
    1045099 9pg8:A2 (3.06) BS01 rna N/A N/A N/A 41663403
    1045100 9pg8:A3 (3.06) BS01 rna N/A N/A N/A 41663403
    1045101 9pg8:A4 (3.06) BS01 rna N/A N/A N/A 41663403
    1045102 9pg8:AB (3.06) BS01 rna N/A N/A N/A 41663403
    1045103 9pg8:AB (3.06) BS02 MG N/A N/A N/A 41663403
    1045104 9pg8:AC (3.06) BS01 rna N/A N/A N/A 41663403
    1045105 9pg8:AD (3.06) BS01 rna N/A N/A N/A 41663403
    1045106 9pg8:AD (3.06) BS02 rna N/A N/A N/A 41663403
    1045107 9pg8:AE (3.06) BS01 rna N/A N/A N/A 41663403
    1045108 9pg8:AE (3.06) BS02 FES N/A N/A N/A 41663403
    1045109 9pg8:AF (3.06) BS01 rna N/A N/A N/A 41663403
    1045110 9pg8:AF (3.06) BS02 rna N/A N/A N/A 41663403
    1045111 9pg8:AF (3.06) BS03 rna N/A N/A N/A 41663403
    1045112 9pg8:AG (3.06) BS01 rna N/A N/A N/A 41663403
    1045113 9pg8:AG (3.06) BS02 rna N/A N/A N/A 41663403
    1045114 9pg8:AG (3.06) BS03 rna N/A N/A N/A 41663403
    1045115 9pg8:AH (3.06) BS01 rna N/A N/A N/A 41663403
    1045116 9pg8:AI (3.06) BS01 rna N/A N/A N/A 41663403
    1045117 9pg8:AJ (3.06) BS01 rna N/A N/A N/A 41663403
    1045118 9pg8:AK (3.06) BS01 rna N/A N/A N/A 41663403
    1045119 9pg8:AL (3.06) BS01 rna N/A N/A N/A 41663403
    1045120 9pg8:AL (3.06) BS02 NAD N/A N/A N/A 41663403
    1045121 9pg8:AM (3.06) BS01 rna N/A N/A N/A 41663403
    1045122 9pg8:AM (3.06) BS02 FES N/A N/A N/A 41663403
    1045123 9pg8:AN (3.06) BS01 rna N/A N/A N/A 41663403
    1045124 9pg8:AO (3.06) BS01 rna N/A N/A N/A 41663403
    1045125 9pg8:AO (3.06) BS02 ZN N/A N/A N/A 41663403
    1045126 9pg8:AP (3.06) BS01 rna N/A N/A N/A 41663403
    1045127 9pg8:AP (3.06) BS02 FES N/A N/A N/A 41663403
    1045128 9pg8:AQ (3.06) BS01 rna N/A N/A N/A 41663403
    1045129 9pg8:AS (3.06) BS01 rna N/A N/A N/A 41663403
    1045130 9pg8:AT (3.06) BS01 rna N/A N/A N/A 41663403
    1045131 9pg8:AT (3.06) BS02 FES N/A N/A N/A 41663403
    1045132 9pg8:AU (3.06) BS01 rna N/A N/A N/A 41663403
    1045133 9pg8:AV (3.06) BS01 rna N/A N/A N/A 41663403
    1045134 9pg8:AX (3.06) BS01 rna N/A N/A N/A 41663403
    1045135 9pg8:AX (3.06) BS02 ATP N/A N/A N/A 41663403
    1045136 9pg8:AX (3.06) BS03 GDP N/A N/A N/A 41663403
    1045137 9pg8:AZ (3.06) BS01 rna N/A N/A N/A 41663403
    1045138 9pg8:C (3.06) BS01 rna N/A N/A N/A 41663403
    1045139 9pg8:D (3.06) BS01 rna N/A N/A N/A 41663403
    1045140 9pg8:E (3.06) BS01 rna N/A N/A N/A 41663403
    1045141 9pg8:F (3.06) BS01 rna N/A N/A N/A 41663403
    1045142 9pg8:H (3.06) BS01 rna N/A N/A N/A 41663403
    1045143 9pg8:I (3.06) BS01 rna N/A N/A N/A 41663403
    1045144 9pg8:I (3.06) BS02 FES N/A N/A N/A 41663403
    1045145 9pg8:J (3.06) BS01 rna N/A N/A N/A 41663403
    1045146 9pg8:K (3.06) BS01 rna N/A N/A N/A 41663403
    1045147 9pg8:L (3.06) BS01 rna N/A N/A N/A 41663403
    1045148 9pg8:L (3.06) BS02 rna N/A N/A N/A 41663403
    1045149 9pg8:M (3.06) BS01 rna N/A N/A N/A 41663403
    1045150 9pg8:N (3.06) BS01 rna N/A N/A N/A 41663403
    1045151 9pg8:O (3.06) BS01 rna N/A N/A N/A 41663403
    1045152 9pg8:OX (3.06) BS01 rna N/A N/A N/A 41663403
    1045153 9pg8:P (3.06) BS01 rna N/A N/A N/A 41663403
    1045154 9pg8:P (3.06) BS02 rna N/A N/A N/A 41663403
    1045155 9pg8:Q (3.06) BS01 rna N/A N/A N/A 41663403
    1045156 9pg8:R (3.06) BS01 rna N/A N/A N/A 41663403
    1045157 9pg8:S (3.06) BS01 rna N/A N/A N/A 41663403
    1045158 9pg8:T (3.06) BS01 rna N/A N/A N/A 41663403
    1045159 9pg8:U (3.06) BS01 rna N/A N/A N/A 41663403
    1045160 9pg8:V (3.06) BS01 rna N/A N/A N/A 41663403
    1045161 9pg8:W (3.06) BS01 rna N/A N/A N/A 41663403
    1045162 9pg8:X (3.06) BS01 rna N/A N/A N/A 41663403
    1045163 9pg8:Y (3.06) BS01 rna N/A N/A N/A 41663403
    1045164 9pg8:Z (3.06) BS01 rna N/A N/A N/A 41663403
    1045165 9pg8:a (3.06) BS01 rna N/A N/A N/A 41663403
    1045166 9pg8:b (3.06) BS01 rna N/A N/A N/A 41663403
    1045167 9pg8:c (3.06) BS01 rna N/A N/A N/A 41663403
    1045168 9pg8:d (3.06) BS01 rna N/A N/A N/A 41663403
    1045169 9pg8:e (3.06) BS01 rna N/A N/A N/A 41663403
    1045170 9pg8:e (3.06) BS02 VAL N/A N/A N/A 41663403
    1045171 9pg8:f (3.06) BS01 rna N/A N/A N/A 41663403
    1045172 9pg8:f (3.06) BS02 rna N/A N/A N/A 41663403
    1045173 9pg8:f (3.06) BS03 rna N/A N/A N/A 41663403
    1045174 9pg8:g (3.06) BS01 rna N/A N/A N/A 41663403
    1045175 9pg8:i (3.06) BS01 rna N/A N/A N/A 41663403
    1045176 9pg8:j (3.06) BS01 rna N/A N/A N/A 41663403
    1045177 9pg8:k (3.06) BS01 rna N/A N/A N/A 41663403
    1045178 9pg8:l (3.06) BS01 rna N/A N/A N/A 41663403
    1045179 9pg8:m (3.06) BS01 rna N/A N/A N/A 41663403
    1045180 9pg8:m (3.06) BS02 rna N/A N/A N/A 41663403
    1045181 9pg8:n (3.06) BS01 rna N/A N/A N/A 41663403
    1045182 9pg8:o (3.06) BS01 rna N/A N/A N/A 41663403
    1045183 9pg8:q (3.06) BS01 rna N/A N/A N/A 41663403
    1045184 9pg8:q (3.06) BS02 rna N/A N/A N/A 41663403
    1045185 9pg8:r (3.06) BS01 rna N/A N/A N/A 41663403
    1045186 9pg8:r (3.06) BS02 FES N/A N/A N/A 41663403
    1045187 9pg8:s (3.06) BS01 rna N/A N/A N/A 41663403
    1045188 9pg8:z (3.06) BS01 rna N/A N/A N/A 41663403
    1045189 9pg8:z (3.06) BS02 rna N/A N/A N/A 41663403
    1045190 9pga:C (3.98) BS01 dna N/A N/A N/A N/A
    1045191 9pga:C (3.98) BS02 dna N/A N/A N/A N/A
    1045192 9pga:D (3.98) BS01 dna N/A N/A N/A N/A
    1045193 9pga:D (3.98) BS02 dna N/A N/A N/A N/A
    1045194 9pga:D (3.98) BS03 ZN N/A N/A N/A N/A
    1045195 9pga:F (3.98) BS01 dna N/A N/A N/A N/A
    1045196 9pga:F (3.98) BS02 dna N/A N/A N/A N/A
    1045197 9pga:Q (3.98) BS01 dna N/A N/A N/A N/A
    1045198 9pga:Q (3.98) BS02 dna N/A N/A N/A N/A
    1045199 9pga:Q (3.98) BS03 dna N/A N/A N/A N/A
    1045200 9pga:R (3.98) BS01 dna N/A N/A N/A N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).