SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1046001 9pkg:Lj (3.26) BS01 rna N/A N/A P61927 41315256
    1046002 9pkg:Lj (3.26) BS02 rna N/A N/A P61927 41315256
    1046003 9pkg:Lj (3.26) BS03 ZN N/A N/A P61927 41315256
    1046004 9pkg:Lk (3.26) BS01 rna N/A GO:0002181 ... P63173 41315256
    1046005 9pkg:Ll (3.26) BS01 rna N/A GO:0002181 ... P62891 41315256
    1046006 9pkg:Ll (3.26) BS02 rna N/A GO:0002181 ... P62891 41315256
    1046007 9pkg:Lm (3.26) BS01 rna N/A N/A P62987 41315256
    1046008 9pkg:Lm (3.26) BS02 ZN N/A N/A P62987 41315256
    1046009 9pkg:Lo (3.26) BS01 rna N/A GO:0002181 ... P83881 41315256
    1046010 9pkg:Lo (3.26) BS02 rna N/A GO:0002181 ... P83881 41315256
    1046011 9pkg:Lo (3.26) BS03 ZN N/A GO:0002181 ... P83881 41315256
    1046012 9pkg:Lp (3.26) BS01 rna N/A GO:0002181 ... P61513 41315256
    1046013 9pkg:Lp (3.26) BS02 ZN N/A GO:0002181 ... P61513 41315256
    1046014 9pkg:Lr (3.26) BS01 rna N/A GO:0002181 ... P46779 41315256
    1046015 9pkg:Ls (3.26) BS01 rna N/A N/A P05388 41315256
    1046016 9pkg:Lt (3.26) BS01 rna N/A GO:0002181 ... P30050 41315256
    1046017 9pkg:SA (3.26) BS01 rna N/A N/A P08865 41315256
    1046018 9pkg:SB (3.26) BS01 rna N/A N/A P61247 41315256
    1046019 9pkg:SC (3.26) BS01 rna N/A N/A P15880 41315256
    1046020 9pkg:SD (3.26) BS01 rna N/A GO:0001228 ... P23396 41315256
    1046021 9pkg:SE (3.26) BS01 rna N/A GO:0002181 ... P62701 41315256
    1046022 9pkg:SF (3.26) BS01 rna N/A GO:0002181 ... P46782 41315256
    1046023 9pkg:SG (3.26) BS01 rna N/A GO:0002181 ... P62753 41315256
    1046024 9pkg:SH (3.26) BS01 rna N/A GO:0002181 ... P62081 41315256
    1046025 9pkg:SI (3.26) BS01 rna N/A GO:0002181 ... P62241 41315256
    1046026 9pkg:SI (3.26) BS02 rna N/A GO:0002181 ... P62241 41315256
    1046027 9pkg:SJ (3.26) BS01 rna N/A GO:0002181 ... P46781 41315256
    1046028 9pkg:SK (3.26) BS01 rna N/A N/A P46783 41315256
    1046029 9pkg:SL (3.26) BS01 rna N/A GO:0002181 ... P62280 41315256
    1046030 9pkg:SL (3.26) BS02 rna N/A GO:0002181 ... P62280 41315256
    1046031 9pkg:SM (3.26) BS01 rna N/A GO:0002181 ... P25398 41315256
    1046032 9pkg:SN (3.26) BS01 rna N/A GO:0000462 ... P62277 41315256
    1046033 9pkg:SN (3.26) BS02 rna N/A GO:0000462 ... P62277 41315256
    1046034 9pkg:SO (3.26) BS01 rna N/A GO:0000028 ... P62263 41315256
    1046035 9pkg:SP (3.26) BS01 rna N/A N/A P62841 41315256
    1046036 9pkg:SP (3.26) BS02 rna N/A N/A P62841 41315256
    1046037 9pkg:SQ (3.26) BS01 rna N/A GO:0000462 ... P62249 41315256
    1046038 9pkg:SR (3.26) BS01 rna N/A GO:0002181 ... P08708 41315256
    1046039 9pkg:SS (3.26) BS01 rna N/A GO:0002181 ... P62269 41315256
    1046040 9pkg:ST (3.26) BS01 rna N/A GO:0000028 ... P39019 41315256
    1046041 9pkg:SU (3.26) BS01 rna N/A N/A P60866 41315256
    1046042 9pkg:SW (3.26) BS01 rna N/A GO:0002181 ... P62244 41315256
    1046043 9pkg:SX (3.26) BS01 rna N/A GO:0002181 ... P62266 41315256
    1046044 9pkg:SY (3.26) BS01 rna N/A GO:0002181 ... P62847 41315256
    1046045 9pkg:SZ (3.26) BS01 rna N/A N/A P62851 41315256
    1046046 9pkg:Sa (3.26) BS01 rna N/A N/A P62854 41315256
    1046047 9pkg:Sa (3.26) BS02 ZN N/A N/A P62854 41315256
    1046048 9pkg:Sb (3.26) BS01 rna N/A GO:0002181 ... P42677 41315256
    1046049 9pkg:Sc (3.26) BS01 rna N/A GO:0000028 ... P62857 41315256
    1046050 9pkg:Sd (3.26) BS01 rna N/A GO:0002181 ... P62273 41315256
    1046051 9pkg:Se (3.26) BS01 rna N/A N/A P62861 41315256
    1046052 9pkg:Sf (3.26) BS01 rna N/A N/A P62979 41315256
    1046053 9pkg:Sg (3.26) BS01 rna N/A GO:0001891 ... P63244 41315256
    1046054 9pkr:A (1.54) BS01 peptide N/A N/A P0DTD1 41412823
    1046055 9pkr:B (1.54) BS01 peptide N/A N/A P0DTD1 41412823
    1046056 9pku:A (2.88) BS01 peptide N/A N/A Q9ULM3 N/A
    1046057 9pku:A (2.88) BS02 BZ2 N/A N/A Q9ULM3 N/A
    1046058 9pku:C (2.88) BS01 peptide N/A N/A Q9ULM3 N/A
    1046059 9pku:C (2.88) BS02 BZ2 N/A N/A Q9ULM3 N/A
    1046060 9pkv:A (2.72) BS01 peptide N/A GO:0000139 ... Q8WLS4 40990156
    1046061 9pkv:H (2.72) BS01 peptide N/A N/A N/A 40990156
    1046062 9pkw:A (2.86) BS01 SY9 N/A N/A B3DHZ5 N/A
    1046063 9pkw:A (2.86) BS02 SY9 N/A N/A B3DHZ5 N/A
    1046064 9pkw:B (2.86) BS01 SY9 N/A N/A B3DHZ5 N/A
    1046065 9pkw:B (2.86) BS02 SY9 N/A N/A B3DHZ5 N/A
    1046066 9pkw:C (2.86) BS01 SY9 N/A N/A B3DHZ5 N/A
    1046067 9pkw:D (2.86) BS01 SY9 N/A N/A B3DHZ5 N/A
    1046068 9pkw:D (2.86) BS02 SY9 N/A N/A B3DHZ5 N/A
    1046069 9pkw:E (2.86) BS01 SY9 N/A GO:0005737 ... Q6DC22 N/A
    1046070 9pkx:A (2.86) BS01 SY9 N/A N/A B3DHZ5 N/A
    1046071 9pkx:A (2.86) BS02 SY9 N/A N/A B3DHZ5 N/A
    1046072 9pkx:B (2.86) BS01 SY9 N/A N/A B3DHZ5 N/A
    1046073 9pkx:B (2.86) BS02 SY9 N/A N/A B3DHZ5 N/A
    1046074 9pkx:C (2.86) BS01 SY9 N/A N/A B3DHZ5 N/A
    1046075 9pkx:C (2.86) BS02 SY9 N/A N/A B3DHZ5 N/A
    1046076 9pkx:D (2.86) BS01 SY9 N/A N/A B3DHZ5 N/A
    1046077 9pkx:D (2.86) BS02 SY9 N/A N/A B3DHZ5 N/A
    1046078 9pkx:E (2.86) BS01 SY9 N/A GO:0005737 ... Q6DC22 N/A
    1046079 9pky:A (2.89) BS01 SY9 N/A N/A B3DHZ5 N/A
    1046080 9pky:A (2.89) BS02 IVM N/A N/A B3DHZ5 N/A
    1046081 9pky:A (2.89) BS03 IVM N/A N/A B3DHZ5 N/A
    1046082 9pky:A (2.89) BS04 SY9 N/A N/A B3DHZ5 N/A
    1046083 9pky:B (2.89) BS01 IVM N/A N/A B3DHZ5 N/A
    1046084 9pky:B (2.89) BS02 SY9 N/A N/A B3DHZ5 N/A
    1046085 9pky:B (2.89) BS03 IVM N/A N/A B3DHZ5 N/A
    1046086 9pky:B (2.89) BS04 SY9 N/A N/A B3DHZ5 N/A
    1046087 9pky:C (2.89) BS01 SY9 N/A N/A B3DHZ5 N/A
    1046088 9pky:C (2.89) BS02 IVM N/A N/A B3DHZ5 N/A
    1046089 9pky:C (2.89) BS03 SY9 N/A N/A B3DHZ5 N/A
    1046090 9pky:C (2.89) BS04 IVM N/A N/A B3DHZ5 N/A
    1046091 9pky:D (2.89) BS01 SY9 N/A N/A B3DHZ5 N/A
    1046092 9pky:D (2.89) BS02 IVM N/A N/A B3DHZ5 N/A
    1046093 9pky:D (2.89) BS03 SY9 N/A N/A B3DHZ5 N/A
    1046094 9pky:D (2.89) BS04 IVM N/A N/A B3DHZ5 N/A
    1046095 9pky:E (2.89) BS01 SY9 N/A GO:0005737 ... Q6DC22 N/A
    1046096 9pky:E (2.89) BS02 IVM N/A GO:0005737 ... Q6DC22 N/A
    1046097 9pky:E (2.89) BS03 SY9 N/A GO:0005737 ... Q6DC22 N/A
    1046098 9pky:E (2.89) BS04 IVM N/A GO:0005737 ... Q6DC22 N/A
    1046099 9pkz:A (2.89) BS01 IVM N/A N/A B3DHZ5 N/A
    1046100 9pkz:A (2.89) BS02 SY9 N/A N/A B3DHZ5 N/A
    1046101 9pkz:A (2.89) BS03 IVM N/A N/A B3DHZ5 N/A
    1046102 9pkz:A (2.89) BS04 SY9 N/A N/A B3DHZ5 N/A
    1046103 9pkz:B (2.89) BS01 IVM N/A N/A B3DHZ5 N/A
    1046104 9pkz:B (2.89) BS02 SY9 N/A N/A B3DHZ5 N/A
    1046105 9pkz:B (2.89) BS03 SY9 N/A N/A B3DHZ5 N/A
    1046106 9pkz:B (2.89) BS04 IVM N/A N/A B3DHZ5 N/A
    1046107 9pkz:C (2.89) BS01 SY9 N/A N/A B3DHZ5 N/A
    1046108 9pkz:C (2.89) BS02 IVM N/A N/A B3DHZ5 N/A
    1046109 9pkz:C (2.89) BS03 SY9 N/A N/A B3DHZ5 N/A
    1046110 9pkz:D (2.89) BS01 SY9 N/A N/A B3DHZ5 N/A
    1046111 9pkz:D (2.89) BS02 IVM N/A N/A B3DHZ5 N/A
    1046112 9pkz:D (2.89) BS03 SY9 N/A N/A B3DHZ5 N/A
    1046113 9pkz:D (2.89) BS04 IVM N/A N/A B3DHZ5 N/A
    1046114 9pkz:E (2.89) BS01 IVM N/A GO:0005737 ... Q6DC22 N/A
    1046115 9pkz:E (2.89) BS02 SY9 N/A GO:0005737 ... Q6DC22 N/A
    1046116 9pkz:E (2.89) BS03 IVM N/A GO:0005737 ... Q6DC22 N/A
    1046117 9pkz:E (2.89) BS04 SY9 N/A GO:0005737 ... Q6DC22 N/A
    1046118 9pl0:A (2.25) BS01 FMN N/A GO:0004318 ... Q8RGV3 41726333
    1046119 9pl0:A (2.25) BS02 A1CIO N/A GO:0004318 ... Q8RGV3 41726333
    1046120 9pl0:A (2.25) BS03 JEF N/A GO:0004318 ... Q8RGV3 41726333
    1046121 9pl0:A (2.25) BS04 JEF N/A GO:0004318 ... Q8RGV3 41726333
    1046122 9pl0:B (2.25) BS01 FMN N/A GO:0004318 ... Q8RGV3 41726333
    1046123 9pl0:B (2.25) BS02 A1CIO N/A GO:0004318 ... Q8RGV3 41726333
    1046124 9pl0:B (2.25) BS03 JEF N/A GO:0004318 ... Q8RGV3 41726333
    1046125 9pl0:B (2.25) BS04 JEF N/A GO:0004318 ... Q8RGV3 41726333
    1046126 9pl0:C (2.25) BS01 FMN N/A GO:0004318 ... Q8RGV3 41726333
    1046127 9pl0:C (2.25) BS02 A1CIO N/A GO:0004318 ... Q8RGV3 41726333
    1046128 9pl0:D (2.25) BS01 FMN N/A GO:0004318 ... Q8RGV3 41726333
    1046129 9pl0:D (2.25) BS02 A1CIO N/A GO:0004318 ... Q8RGV3 41726333
    1046130 9pl0:D (2.25) BS03 JEF N/A GO:0004318 ... Q8RGV3 41726333
    1046131 9pl0:E (2.25) BS01 FMN N/A GO:0004318 ... Q8RGV3 41726333
    1046132 9pl0:E (2.25) BS02 A1CIO N/A GO:0004318 ... Q8RGV3 41726333
    1046133 9pl0:E (2.25) BS03 JEF N/A GO:0004318 ... Q8RGV3 41726333
    1046134 9pl0:E (2.25) BS04 JEF N/A GO:0004318 ... Q8RGV3 41726333
    1046135 9pl0:F (2.25) BS01 FMN N/A GO:0004318 ... Q8RGV3 41726333
    1046136 9pl0:F (2.25) BS02 A1CIO N/A GO:0004318 ... Q8RGV3 41726333
    1046137 9pl0:F (2.25) BS03 JEF N/A GO:0004318 ... Q8RGV3 41726333
    1046138 9pl0:G (2.25) BS01 FMN N/A GO:0004318 ... Q8RGV3 41726333
    1046139 9pl0:G (2.25) BS02 A1CIO N/A GO:0004318 ... Q8RGV3 41726333
    1046140 9pl0:G (2.25) BS03 JEF N/A GO:0004318 ... Q8RGV3 41726333
    1046141 9pl0:H (2.25) BS01 FMN N/A GO:0004318 ... Q8RGV3 41726333
    1046142 9pl0:H (2.25) BS02 A1CIO N/A GO:0004318 ... Q8RGV3 41726333
    1046143 9pl0:H (2.25) BS03 JEF N/A GO:0004318 ... Q8RGV3 41726333
    1046144 9pl0:I (2.25) BS01 FMN N/A GO:0004318 ... Q8RGV3 41726333
    1046145 9pl0:I (2.25) BS02 A1CIO N/A GO:0004318 ... Q8RGV3 41726333
    1046146 9pl0:I (2.25) BS03 JEF N/A GO:0004318 ... Q8RGV3 41726333
    1046147 9pl0:J (2.25) BS01 FMN N/A GO:0004318 ... Q8RGV3 41726333
    1046148 9pl0:J (2.25) BS02 A1CIO N/A GO:0004318 ... Q8RGV3 41726333
    1046149 9pl0:J (2.25) BS03 JEF N/A GO:0004318 ... Q8RGV3 41726333
    1046150 9pl0:K (2.25) BS01 FMN N/A GO:0004318 ... Q8RGV3 41726333
    1046151 9pl0:K (2.25) BS02 A1CIO N/A GO:0004318 ... Q8RGV3 41726333
    1046152 9pl0:L (2.25) BS01 FMN N/A GO:0004318 ... Q8RGV3 41726333
    1046153 9pl0:L (2.25) BS02 A1CIO N/A GO:0004318 ... Q8RGV3 41726333
    1046154 9plj:A (2.72) BS01 HEM N/A GO:0002933 ... P08684 40945735
    1046155 9plj:A (2.72) BS02 TCI N/A GO:0002933 ... P08684 40945735
    1046156 9plk:A (2.25) BS01 HEM N/A GO:0002933 ... P08684 40945735
    1046157 9plk:A (2.25) BS02 A1CIW N/A GO:0002933 ... P08684 40945735
    1046158 9pln:R (2.8) BS01 A1CIU N/A GO:0001819 ... P08913 N/A
    1046159 9plo:R (2.74) BS01 A1CIU N/A GO:0001819 ... P08913 N/A
    1046160 9pls:A (1.762) BS01 OW4 N/A N/A Q2IU02 41767801
    1046161 9pls:A (1.762) BS02 HEM N/A N/A Q2IU02 41767801
    1046162 9ply:A (1.4) BS01 A1CI0 N/A GO:0016567 ... Q9Y4B6 N/A
    1046163 9ply:B (1.4) BS01 A1CI0 N/A GO:0016567 ... Q9Y4B6 N/A
    1046164 9pm9:C (2.75) BS01 G2P N/A N/A A0A482GH76 N/A
    1046165 9pma:A (1.746) BS01 OW4 N/A N/A Q2IU02 41767801
    1046166 9pma:A (1.746) BS02 HEM N/A N/A Q2IU02 41767801
    1046167 9pmc:A (1.507) BS01 OW4 N/A N/A Q2IU02 41767801
    1046168 9pmc:A (1.507) BS02 HEM N/A N/A Q2IU02 41767801
    1046169 9pmd:A (2.99) BS01 NA N/A GO:0005515 ... O76082 41318751
    1046170 9pme:A (1.52) BS01 peptide N/A GO:0003677 ... P0AE70 41081386
    1046171 9pmk:A (2.84) BS01 G2P N/A N/A A0A482GH76 N/A
    1046172 9pmk:B (2.84) BS01 G2P N/A N/A A0A482GH76 N/A
    1046173 9pmk:B (2.84) BS02 G2P N/A N/A A0A482GH76 N/A
    1046174 9pmk:C (2.84) BS01 G2P N/A N/A A0A482GH76 N/A
    1046175 9pmk:C (2.84) BS02 G2P N/A N/A A0A482GH76 N/A
    1046176 9pmk:D (2.84) BS01 G2P N/A N/A A0A482GH76 N/A
    1046177 9pmm:A (2.15) BS01 rna N/A N/A Q9U2G4 41495898
    1046178 9pmn:A (2.4) BS01 NAD N/A N/A Q7TTK0 N/A
    1046179 9pmn:A (2.4) BS02 UD2 N/A N/A Q7TTK0 N/A
    1046180 9pmn:B (2.4) BS01 NAD N/A N/A Q7TTK0 N/A
    1046181 9pmn:B (2.4) BS02 UD2 N/A N/A Q7TTK0 N/A
    1046182 9pmn:C (2.4) BS01 NAD N/A N/A Q7TTK0 N/A
    1046183 9pmn:C (2.4) BS02 UD2 N/A N/A Q7TTK0 N/A
    1046184 9pmn:D (2.4) BS01 NAD N/A N/A Q7TTK0 N/A
    1046185 9pmn:D (2.4) BS02 UD2 N/A N/A Q7TTK0 N/A
    1046186 9pmp:A (2.49) BS01 MN N/A N/A C3W5S0 41512630
    1046187 9pmp:A (2.49) BS02 MN N/A N/A C3W5S0 41512630
    1046188 9pmp:A (2.49) BS03 HNS N/A N/A C3W5S0 41512630
    1046189 9pmr:A (2.25) BS01 A1CI3 N/A N/A C3W5S0 41512630
    1046190 9pmr:A (2.25) BS02 MN N/A N/A C3W5S0 41512630
    1046191 9pmr:A (2.25) BS03 MN N/A N/A C3W5S0 41512630
    1046192 9pmw:A (2.1) BS01 peptide N/A GO:0000132 ... P42858 41030958
    1046193 9pmw:A (2.1) BS02 peptide N/A GO:0000132 ... P42858 41030958
    1046194 9pmw:A (2.1) BS03 peptide N/A GO:0000132 ... P42858 41030958
    1046195 9pmw:B (2.1) BS01 peptide N/A GO:0005515 ... P23610 41030958
    1046196 9pmz:A (2.33) BS01 A1CI6 N/A N/A P00533 N/A
    1046197 9pn0:A (2.3) BS01 peptide N/A GO:0000132 ... P42858 41030958
    1046198 9pn0:A (2.3) BS02 peptide N/A GO:0000132 ... P42858 41030958
    1046199 9pn0:A (2.3) BS03 peptide N/A GO:0000132 ... P42858 41030958
    1046200 9pn0:B (2.3) BS01 peptide N/A GO:0005515 ... P23610 41030958

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).