SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1046401 9pqt:E (3.2) BS02 ADP N/A N/A N/A 41779823
    1046402 9pqt:F (3.2) BS01 ADP N/A N/A N/A 41779823
    1046403 9pqt:F (3.2) BS02 ADP N/A N/A N/A 41779823
    1046404 9pqv:A (2.92) BS01 rna N/A N/A Q9U2G4 41495898
    1046405 9pqw:A (2.3) BS01 rna N/A N/A Q9U2G4 41495898
    1046406 9pqx:A (2.83) BS01 FMN N/A GO:0004312 ... P95029 41427673
    1046407 9pqx:B (2.83) BS01 FMN N/A GO:0004312 ... P95029 41427673
    1046408 9pqx:C (2.83) BS01 FMN N/A GO:0004312 ... P95029 41427673
    1046409 9pqx:D (2.83) BS01 FMN N/A GO:0004312 ... P95029 41427673
    1046410 9pqx:E (2.83) BS01 FMN N/A GO:0004312 ... P95029 41427673
    1046411 9pqx:F (2.83) BS01 FMN N/A GO:0004312 ... P95029 41427673
    1046412 9pr4:0 (2.77) BS01 rna N/A N/A N/A 41663403
    1046413 9pr4:0 (2.77) BS02 ZN N/A N/A N/A 41663403
    1046414 9pr4:1 (2.77) BS01 rna N/A N/A N/A 41663403
    1046415 9pr4:2 (2.77) BS01 rna N/A N/A N/A 41663403
    1046416 9pr4:3 (2.77) BS01 rna N/A N/A N/A 41663403
    1046417 9pr4:4 (2.77) BS01 rna N/A N/A N/A 41663403
    1046418 9pr4:4 (2.77) BS02 ZN N/A N/A N/A 41663403
    1046419 9pr4:5 (2.77) BS01 rna N/A N/A N/A 41663403
    1046420 9pr4:6 (2.77) BS01 rna N/A N/A N/A 41663403
    1046421 9pr4:6 (2.77) BS02 rna N/A N/A N/A 41663403
    1046422 9pr4:8 (2.77) BS01 rna N/A N/A N/A 41663403
    1046423 9pr4:9 (2.77) BS01 rna N/A N/A N/A 41663403
    1046424 9pr4:C (2.77) BS01 rna N/A N/A N/A 41663403
    1046425 9pr4:D (2.77) BS01 rna N/A N/A N/A 41663403
    1046426 9pr4:E (2.77) BS01 rna N/A N/A N/A 41663403
    1046427 9pr4:F (2.77) BS01 rna N/A N/A N/A 41663403
    1046428 9pr4:H (2.77) BS01 rna N/A N/A N/A 41663403
    1046429 9pr4:I (2.77) BS01 rna N/A N/A N/A 41663403
    1046430 9pr4:I (2.77) BS02 FES N/A N/A N/A 41663403
    1046431 9pr4:J (2.77) BS01 rna N/A N/A N/A 41663403
    1046432 9pr4:K (2.77) BS01 rna N/A N/A N/A 41663403
    1046433 9pr4:L (2.77) BS01 rna N/A N/A N/A 41663403
    1046434 9pr4:M (2.77) BS01 rna N/A N/A N/A 41663403
    1046435 9pr4:N (2.77) BS01 rna N/A N/A N/A 41663403
    1046436 9pr4:O (2.77) BS01 rna N/A N/A N/A 41663403
    1046437 9pr4:OX (2.77) BS01 rna N/A N/A N/A 41663403
    1046438 9pr4:P (2.77) BS01 rna N/A N/A N/A 41663403
    1046439 9pr4:P (2.77) BS02 rna N/A N/A N/A 41663403
    1046440 9pr4:Q (2.77) BS01 rna N/A N/A N/A 41663403
    1046441 9pr4:R (2.77) BS01 rna N/A N/A N/A 41663403
    1046442 9pr4:S (2.77) BS01 rna N/A N/A N/A 41663403
    1046443 9pr4:T (2.77) BS01 rna N/A N/A N/A 41663403
    1046444 9pr4:U (2.77) BS01 rna N/A N/A N/A 41663403
    1046445 9pr4:V (2.77) BS01 rna N/A N/A N/A 41663403
    1046446 9pr4:W (2.77) BS01 rna N/A N/A N/A 41663403
    1046447 9pr4:X (2.77) BS01 rna N/A N/A N/A 41663403
    1046448 9pr4:Y (2.77) BS01 rna N/A N/A N/A 41663403
    1046449 9pr4:Z (2.77) BS01 rna N/A N/A N/A 41663403
    1046450 9pr4:a (2.77) BS01 rna N/A N/A N/A 41663403
    1046451 9pr4:b (2.77) BS01 rna N/A N/A N/A 41663403
    1046452 9pr4:c (2.77) BS01 rna N/A N/A N/A 41663403
    1046453 9pr4:d (2.77) BS01 rna N/A N/A N/A 41663403
    1046454 9pr4:e (2.77) BS01 rna N/A N/A N/A 41663403
    1046455 9pr4:e (2.77) BS02 VAL N/A N/A N/A 41663403
    1046456 9pr4:f (2.77) BS01 rna N/A N/A N/A 41663403
    1046457 9pr4:f (2.77) BS02 rna N/A N/A N/A 41663403
    1046458 9pr4:g (2.77) BS01 rna N/A N/A N/A 41663403
    1046459 9pr4:i (2.77) BS01 rna N/A N/A N/A 41663403
    1046460 9pr4:j (2.77) BS01 rna N/A N/A N/A 41663403
    1046461 9pr4:l (2.77) BS01 rna N/A N/A N/A 41663403
    1046462 9pr4:m (2.77) BS01 rna N/A N/A N/A 41663403
    1046463 9pr4:n (2.77) BS01 rna N/A N/A N/A 41663403
    1046464 9pr4:o (2.77) BS01 rna N/A N/A N/A 41663403
    1046465 9pr4:q (2.77) BS01 rna N/A N/A N/A 41663403
    1046466 9pr4:r (2.77) BS01 rna N/A N/A N/A 41663403
    1046467 9pr4:r (2.77) BS02 FES N/A N/A N/A 41663403
    1046468 9pr4:s (2.77) BS01 rna N/A N/A N/A 41663403
    1046469 9pr4:z (2.77) BS01 rna N/A N/A N/A 41663403
    1046470 9pr5:A (3.3) BS01 PIO N/A GO:0005242 ... O60928 41672996
    1046471 9pr5:B (3.3) BS01 PIO N/A GO:0005242 ... O60928 41672996
    1046472 9pr5:B (3.3) BS02 CLR N/A GO:0005242 ... O60928 41672996
    1046473 9pr5:C (3.3) BS01 PIO N/A GO:0005242 ... O60928 41672996
    1046474 9pr5:C (3.3) BS02 CLR N/A GO:0005242 ... O60928 41672996
    1046475 9pr5:D (3.3) BS01 PIO N/A GO:0005242 ... O60928 41672996
    1046476 9pr6:A (3.9) BS01 PIO N/A GO:0005242 ... O60928 41672996
    1046477 9pr6:B (3.9) BS01 PIO N/A GO:0005242 ... O60928 41672996
    1046478 9pr6:C (3.9) BS01 PIO N/A GO:0005242 ... O60928 41672996
    1046479 9pr6:D (3.9) BS01 PIO N/A GO:0005242 ... O60928 41672996
    1046480 9pr7:A (4.0) BS01 PIO N/A GO:0005242 ... O60928 41672996
    1046481 9pr7:A (4.0) BS02 A1CJG N/A GO:0005242 ... O60928 41672996
    1046482 9pr7:B (4.0) BS01 PIO N/A GO:0005242 ... O60928 41672996
    1046483 9pr7:B (4.0) BS02 A1CJG N/A GO:0005242 ... O60928 41672996
    1046484 9pr7:C (4.0) BS01 PIO N/A GO:0005242 ... O60928 41672996
    1046485 9pr7:C (4.0) BS02 A1CJG N/A GO:0005242 ... O60928 41672996
    1046486 9pr7:D (4.0) BS01 PIO N/A GO:0005242 ... O60928 41672996
    1046487 9pr7:D (4.0) BS02 A1CJG N/A GO:0005242 ... O60928 41672996
    1046488 9pra:0 (2.83) BS01 rna N/A N/A N/A 41663403
    1046489 9pra:0 (2.83) BS02 ZN N/A N/A N/A 41663403
    1046490 9pra:1 (2.83) BS01 rna N/A N/A N/A 41663403
    1046491 9pra:2 (2.83) BS01 rna N/A N/A N/A 41663403
    1046492 9pra:3 (2.83) BS01 rna N/A N/A N/A 41663403
    1046493 9pra:4 (2.83) BS01 rna N/A N/A N/A 41663403
    1046494 9pra:4 (2.83) BS02 ZN N/A N/A N/A 41663403
    1046495 9pra:5 (2.83) BS01 rna N/A N/A N/A 41663403
    1046496 9pra:6 (2.83) BS01 rna N/A N/A N/A 41663403
    1046497 9pra:6 (2.83) BS02 rna N/A N/A N/A 41663403
    1046498 9pra:8 (2.83) BS01 rna N/A N/A N/A 41663403
    1046499 9pra:9 (2.83) BS01 rna N/A N/A N/A 41663403
    1046500 9pra:Ad (2.83) BS01 rna N/A N/A N/A 41663403
    1046501 9pra:D (2.83) BS01 rna N/A N/A N/A 41663403
    1046502 9pra:E (2.83) BS01 rna N/A N/A N/A 41663403
    1046503 9pra:F (2.83) BS01 rna N/A N/A N/A 41663403
    1046504 9pra:H (2.83) BS01 rna N/A N/A N/A 41663403
    1046505 9pra:I (2.83) BS01 rna N/A N/A N/A 41663403
    1046506 9pra:J (2.83) BS01 rna N/A N/A N/A 41663403
    1046507 9pra:K (2.83) BS01 rna N/A N/A N/A 41663403
    1046508 9pra:L (2.83) BS01 rna N/A N/A N/A 41663403
    1046509 9pra:M (2.83) BS01 rna N/A N/A N/A 41663403
    1046510 9pra:N (2.83) BS01 rna N/A N/A N/A 41663403
    1046511 9pra:O (2.83) BS01 rna N/A N/A N/A 41663403
    1046512 9pra:OX (2.83) BS01 rna N/A N/A N/A 41663403
    1046513 9pra:P (2.83) BS01 rna N/A N/A N/A 41663403
    1046514 9pra:P (2.83) BS02 rna N/A N/A N/A 41663403
    1046515 9pra:Q (2.83) BS01 rna N/A N/A N/A 41663403
    1046516 9pra:R (2.83) BS01 rna N/A N/A N/A 41663403
    1046517 9pra:S (2.83) BS01 rna N/A N/A N/A 41663403
    1046518 9pra:T (2.83) BS01 rna N/A N/A N/A 41663403
    1046519 9pra:U (2.83) BS01 rna N/A N/A N/A 41663403
    1046520 9pra:V (2.83) BS01 rna N/A N/A N/A 41663403
    1046521 9pra:W (2.83) BS01 rna N/A N/A N/A 41663403
    1046522 9pra:X (2.83) BS01 rna N/A N/A N/A 41663403
    1046523 9pra:Y (2.83) BS01 rna N/A N/A N/A 41663403
    1046524 9pra:Z (2.83) BS01 rna N/A N/A N/A 41663403
    1046525 9pra:a (2.83) BS01 rna N/A N/A N/A 41663403
    1046526 9pra:b (2.83) BS01 rna N/A N/A N/A 41663403
    1046527 9pra:c (2.83) BS01 rna N/A N/A N/A 41663403
    1046528 9pra:d (2.83) BS01 rna N/A N/A N/A 41663403
    1046529 9pra:e (2.83) BS01 rna N/A N/A N/A 41663403
    1046530 9pra:e (2.83) BS02 VAL N/A N/A N/A 41663403
    1046531 9pra:f (2.83) BS01 rna N/A N/A N/A 41663403
    1046532 9pra:f (2.83) BS02 rna N/A N/A N/A 41663403
    1046533 9pra:g (2.83) BS01 rna N/A N/A N/A 41663403
    1046534 9pra:i (2.83) BS01 rna N/A N/A N/A 41663403
    1046535 9pra:j (2.83) BS01 rna N/A N/A N/A 41663403
    1046536 9pra:l (2.83) BS01 rna N/A N/A N/A 41663403
    1046537 9pra:m (2.83) BS01 rna N/A N/A N/A 41663403
    1046538 9pra:n (2.83) BS01 rna N/A N/A N/A 41663403
    1046539 9pra:o (2.83) BS01 rna N/A N/A N/A 41663403
    1046540 9pra:q (2.83) BS01 rna N/A N/A N/A 41663403
    1046541 9pra:r (2.83) BS01 rna N/A N/A N/A 41663403
    1046542 9pra:r (2.83) BS02 FES N/A N/A N/A 41663403
    1046543 9pra:s (2.83) BS01 rna N/A N/A N/A 41663403
    1046544 9pra:z (2.83) BS01 rna N/A N/A N/A 41663403
    1046545 9prc:A (3.5) BS01 rna N/A GO:0003723 ... P0C6L3 41564123
    1046546 9prc:B (3.5) BS01 rna N/A GO:0003723 ... P0C6L3 41564123
    1046547 9prc:D (3.5) BS01 rna N/A GO:0003723 ... P0C6L3 41564123
    1046548 9prc:G (3.5) BS01 rna N/A GO:0003723 ... P0C6L3 41564123
    1046549 9prd:0 (3.31) BS01 rna N/A N/A N/A 41663403
    1046550 9prd:0 (3.31) BS02 ZN N/A N/A N/A 41663403
    1046551 9prd:1 (3.31) BS01 rna N/A N/A N/A 41663403
    1046552 9prd:2 (3.31) BS01 rna N/A N/A N/A 41663403
    1046553 9prd:3 (3.31) BS01 rna N/A N/A N/A 41663403
    1046554 9prd:4 (3.31) BS01 rna N/A N/A N/A 41663403
    1046555 9prd:4 (3.31) BS02 ZN N/A N/A N/A 41663403
    1046556 9prd:5 (3.31) BS01 rna N/A N/A N/A 41663403
    1046557 9prd:6 (3.31) BS01 rna N/A N/A N/A 41663403
    1046558 9prd:6 (3.31) BS02 rna N/A N/A N/A 41663403
    1046559 9prd:8 (3.31) BS01 rna N/A N/A N/A 41663403
    1046560 9prd:8 (3.31) BS02 rna N/A N/A N/A 41663403
    1046561 9prd:8 (3.31) BS03 rna N/A N/A N/A 41663403
    1046562 9prd:9 (3.31) BS01 rna N/A N/A N/A 41663403
    1046563 9prd:A0 (3.31) BS01 rna N/A N/A N/A 41663403
    1046564 9prd:A1 (3.31) BS01 rna N/A N/A N/A 41663403
    1046565 9prd:A2 (3.31) BS01 rna N/A N/A N/A 41663403
    1046566 9prd:A3 (3.31) BS01 rna N/A N/A N/A 41663403
    1046567 9prd:A4 (3.31) BS01 rna N/A N/A N/A 41663403
    1046568 9prd:AB (3.31) BS01 rna N/A N/A N/A 41663403
    1046569 9prd:AB (3.31) BS02 MG N/A N/A N/A 41663403
    1046570 9prd:AC (3.31) BS01 rna N/A N/A N/A 41663403
    1046571 9prd:AD (3.31) BS01 rna N/A N/A N/A 41663403
    1046572 9prd:AD (3.31) BS02 rna N/A N/A N/A 41663403
    1046573 9prd:AE (3.31) BS01 rna N/A N/A N/A 41663403
    1046574 9prd:AE (3.31) BS02 FES N/A N/A N/A 41663403
    1046575 9prd:AF (3.31) BS01 rna N/A N/A N/A 41663403
    1046576 9prd:AF (3.31) BS02 rna N/A N/A N/A 41663403
    1046577 9prd:AG (3.31) BS01 rna N/A N/A N/A 41663403
    1046578 9prd:AG (3.31) BS02 rna N/A N/A N/A 41663403
    1046579 9prd:AG (3.31) BS03 rna N/A N/A N/A 41663403
    1046580 9prd:AH (3.31) BS01 rna N/A N/A N/A 41663403
    1046581 9prd:AI (3.31) BS01 rna N/A N/A N/A 41663403
    1046582 9prd:AJ (3.31) BS01 rna N/A N/A N/A 41663403
    1046583 9prd:AK (3.31) BS01 rna N/A N/A N/A 41663403
    1046584 9prd:AL (3.31) BS01 rna N/A N/A N/A 41663403
    1046585 9prd:AM (3.31) BS01 rna N/A N/A N/A 41663403
    1046586 9prd:AM (3.31) BS02 FES N/A N/A N/A 41663403
    1046587 9prd:AN (3.31) BS01 rna N/A N/A N/A 41663403
    1046588 9prd:AO (3.31) BS01 rna N/A N/A N/A 41663403
    1046589 9prd:AO (3.31) BS02 ZN N/A N/A N/A 41663403
    1046590 9prd:AP (3.31) BS01 rna N/A N/A N/A 41663403
    1046591 9prd:AP (3.31) BS02 FES N/A N/A N/A 41663403
    1046592 9prd:AQ (3.31) BS01 rna N/A N/A N/A 41663403
    1046593 9prd:AS (3.31) BS01 rna N/A N/A N/A 41663403
    1046594 9prd:AT (3.31) BS01 rna N/A N/A N/A 41663403
    1046595 9prd:AT (3.31) BS02 FES N/A N/A N/A 41663403
    1046596 9prd:AU (3.31) BS01 rna N/A N/A N/A 41663403
    1046597 9prd:AV (3.31) BS01 rna N/A N/A N/A 41663403
    1046598 9prd:AX (3.31) BS01 rna N/A N/A N/A 41663403
    1046599 9prd:AX (3.31) BS02 ATP N/A N/A N/A 41663403
    1046600 9prd:AX (3.31) BS03 GDP N/A N/A N/A 41663403

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).