SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1047001 9ps0:l (3.29) BS01 rna N/A N/A N/A 41663403
    1047002 9ps0:m (3.29) BS01 rna N/A N/A N/A 41663403
    1047003 9ps0:o (3.29) BS01 rna N/A N/A N/A 41663403
    1047004 9ps0:q (3.29) BS01 rna N/A N/A N/A 41663403
    1047005 9ps0:q (3.29) BS02 rna N/A N/A N/A 41663403
    1047006 9ps0:r (3.29) BS01 rna N/A N/A N/A 41663403
    1047007 9ps0:r (3.29) BS02 FES N/A N/A N/A 41663403
    1047008 9ps0:s (3.29) BS01 rna N/A N/A N/A 41663403
    1047009 9ps0:z (3.29) BS01 rna N/A N/A N/A 41663403
    1047010 9ps1:A (2.6) BS01 CA N/A GO:0016020 ... Q6AXS0 40931067
    1047011 9ps1:B (2.6) BS01 CA N/A GO:0016020 ... Q6AXS0 40931067
    1047012 9ps1:C (2.6) BS01 CA N/A GO:0016020 ... Q6AXS0 40931067
    1047013 9ps2:A (2.15) BS01 CA N/A GO:0016020 ... Q6AXS0 40931067
    1047014 9ps2:B (2.15) BS01 CA N/A GO:0016020 ... Q6AXS0 40931067
    1047015 9ps2:C (2.15) BS01 CA N/A GO:0016020 ... Q6AXS0 40931067
    1047016 9ps7:0 (3.08) BS01 rna N/A N/A N/A 41663403
    1047017 9ps7:0 (3.08) BS02 ZN N/A N/A N/A 41663403
    1047018 9ps7:1 (3.08) BS01 rna N/A N/A N/A 41663403
    1047019 9ps7:2 (3.08) BS01 rna N/A N/A N/A 41663403
    1047020 9ps7:3 (3.08) BS01 rna N/A N/A N/A 41663403
    1047021 9ps7:4 (3.08) BS01 rna N/A N/A N/A 41663403
    1047022 9ps7:4 (3.08) BS02 ZN N/A N/A N/A 41663403
    1047023 9ps7:5 (3.08) BS01 rna N/A N/A N/A 41663403
    1047024 9ps7:6 (3.08) BS01 rna N/A N/A N/A 41663403
    1047025 9ps7:6 (3.08) BS02 rna N/A N/A N/A 41663403
    1047026 9ps7:8 (3.08) BS01 rna N/A N/A N/A 41663403
    1047027 9ps7:8 (3.08) BS02 rna N/A N/A N/A 41663403
    1047028 9ps7:8 (3.08) BS03 rna N/A N/A N/A 41663403
    1047029 9ps7:9 (3.08) BS01 rna N/A N/A N/A 41663403
    1047030 9ps7:A0 (3.08) BS01 rna N/A N/A N/A 41663403
    1047031 9ps7:A1 (3.08) BS01 rna N/A N/A N/A 41663403
    1047032 9ps7:A2 (3.08) BS01 rna N/A N/A N/A 41663403
    1047033 9ps7:A3 (3.08) BS01 rna N/A N/A N/A 41663403
    1047034 9ps7:A4 (3.08) BS01 rna N/A N/A N/A 41663403
    1047035 9ps7:AB (3.08) BS01 rna N/A N/A N/A 41663403
    1047036 9ps7:AB (3.08) BS02 MG N/A N/A N/A 41663403
    1047037 9ps7:AC (3.08) BS01 rna N/A N/A N/A 41663403
    1047038 9ps7:AD (3.08) BS01 rna N/A N/A N/A 41663403
    1047039 9ps7:AD (3.08) BS02 rna N/A N/A N/A 41663403
    1047040 9ps7:AE (3.08) BS01 rna N/A N/A N/A 41663403
    1047041 9ps7:AE (3.08) BS02 FES N/A N/A N/A 41663403
    1047042 9ps7:AF (3.08) BS01 rna N/A N/A N/A 41663403
    1047043 9ps7:AF (3.08) BS02 rna N/A N/A N/A 41663403
    1047044 9ps7:AF (3.08) BS03 rna N/A N/A N/A 41663403
    1047045 9ps7:AG (3.08) BS01 rna N/A N/A N/A 41663403
    1047046 9ps7:AG (3.08) BS02 rna N/A N/A N/A 41663403
    1047047 9ps7:AH (3.08) BS01 rna N/A N/A N/A 41663403
    1047048 9ps7:AI (3.08) BS01 rna N/A N/A N/A 41663403
    1047049 9ps7:AJ (3.08) BS01 rna N/A N/A N/A 41663403
    1047050 9ps7:AK (3.08) BS01 rna N/A N/A N/A 41663403
    1047051 9ps7:AL (3.08) BS01 rna N/A N/A N/A 41663403
    1047052 9ps7:AM (3.08) BS01 rna N/A N/A N/A 41663403
    1047053 9ps7:AM (3.08) BS02 FES N/A N/A N/A 41663403
    1047054 9ps7:AN (3.08) BS01 rna N/A N/A N/A 41663403
    1047055 9ps7:AO (3.08) BS01 rna N/A N/A N/A 41663403
    1047056 9ps7:AO (3.08) BS02 ZN N/A N/A N/A 41663403
    1047057 9ps7:AP (3.08) BS01 rna N/A N/A N/A 41663403
    1047058 9ps7:AP (3.08) BS02 FES N/A N/A N/A 41663403
    1047059 9ps7:AQ (3.08) BS01 rna N/A N/A N/A 41663403
    1047060 9ps7:AS (3.08) BS01 rna N/A N/A N/A 41663403
    1047061 9ps7:AT (3.08) BS01 rna N/A N/A N/A 41663403
    1047062 9ps7:AT (3.08) BS02 FES N/A N/A N/A 41663403
    1047063 9ps7:AU (3.08) BS01 rna N/A N/A N/A 41663403
    1047064 9ps7:AV (3.08) BS01 rna N/A N/A N/A 41663403
    1047065 9ps7:AX (3.08) BS01 rna N/A N/A N/A 41663403
    1047066 9ps7:AX (3.08) BS02 ATP N/A N/A N/A 41663403
    1047067 9ps7:AX (3.08) BS03 GDP N/A N/A N/A 41663403
    1047068 9ps7:AZ (3.08) BS01 rna N/A N/A N/A 41663403
    1047069 9ps7:Ag (3.08) BS01 rna N/A N/A N/A 41663403
    1047070 9ps7:Ag (3.08) BS02 rna N/A N/A N/A 41663403
    1047071 9ps7:D (3.08) BS01 rna N/A N/A N/A 41663403
    1047072 9ps7:E (3.08) BS01 rna N/A N/A N/A 41663403
    1047073 9ps7:F (3.08) BS01 rna N/A N/A N/A 41663403
    1047074 9ps7:H (3.08) BS01 rna N/A N/A N/A 41663403
    1047075 9ps7:I (3.08) BS01 rna N/A N/A N/A 41663403
    1047076 9ps7:I (3.08) BS02 FES N/A N/A N/A 41663403
    1047077 9ps7:J (3.08) BS01 rna N/A N/A N/A 41663403
    1047078 9ps7:K (3.08) BS01 rna N/A N/A N/A 41663403
    1047079 9ps7:L (3.08) BS01 rna N/A N/A N/A 41663403
    1047080 9ps7:L (3.08) BS02 rna N/A N/A N/A 41663403
    1047081 9ps7:M (3.08) BS01 rna N/A N/A N/A 41663403
    1047082 9ps7:N (3.08) BS01 rna N/A N/A N/A 41663403
    1047083 9ps7:O (3.08) BS01 rna N/A N/A N/A 41663403
    1047084 9ps7:OX (3.08) BS01 rna N/A N/A N/A 41663403
    1047085 9ps7:P (3.08) BS01 rna N/A N/A N/A 41663403
    1047086 9ps7:P (3.08) BS02 rna N/A N/A N/A 41663403
    1047087 9ps7:Q (3.08) BS01 rna N/A N/A N/A 41663403
    1047088 9ps7:R (3.08) BS01 rna N/A N/A N/A 41663403
    1047089 9ps7:S (3.08) BS01 rna N/A N/A N/A 41663403
    1047090 9ps7:T (3.08) BS01 rna N/A N/A N/A 41663403
    1047091 9ps7:U (3.08) BS01 rna N/A N/A N/A 41663403
    1047092 9ps7:V (3.08) BS01 rna N/A N/A N/A 41663403
    1047093 9ps7:W (3.08) BS01 rna N/A N/A N/A 41663403
    1047094 9ps7:X (3.08) BS01 rna N/A N/A N/A 41663403
    1047095 9ps7:Y (3.08) BS01 rna N/A N/A N/A 41663403
    1047096 9ps7:Z (3.08) BS01 rna N/A N/A N/A 41663403
    1047097 9ps7:a (3.08) BS01 rna N/A N/A N/A 41663403
    1047098 9ps7:b (3.08) BS01 rna N/A N/A N/A 41663403
    1047099 9ps7:c (3.08) BS01 rna N/A N/A N/A 41663403
    1047100 9ps7:d (3.08) BS01 rna N/A N/A N/A 41663403
    1047101 9ps7:e (3.08) BS01 rna N/A N/A N/A 41663403
    1047102 9ps7:e (3.08) BS02 VAL N/A N/A N/A 41663403
    1047103 9ps7:f (3.08) BS01 rna N/A N/A N/A 41663403
    1047104 9ps7:f (3.08) BS02 rna N/A N/A N/A 41663403
    1047105 9ps7:f (3.08) BS03 rna N/A N/A N/A 41663403
    1047106 9ps7:g (3.08) BS01 rna N/A N/A N/A 41663403
    1047107 9ps7:i (3.08) BS01 rna N/A N/A N/A 41663403
    1047108 9ps7:j (3.08) BS01 rna N/A N/A N/A 41663403
    1047109 9ps7:k (3.08) BS01 rna N/A N/A N/A 41663403
    1047110 9ps7:l (3.08) BS01 rna N/A N/A N/A 41663403
    1047111 9ps7:m (3.08) BS01 rna N/A N/A N/A 41663403
    1047112 9ps7:n (3.08) BS01 rna N/A N/A N/A 41663403
    1047113 9ps7:o (3.08) BS01 rna N/A N/A N/A 41663403
    1047114 9ps7:q (3.08) BS01 rna N/A N/A N/A 41663403
    1047115 9ps7:q (3.08) BS02 rna N/A N/A N/A 41663403
    1047116 9ps7:r (3.08) BS01 rna N/A N/A N/A 41663403
    1047117 9ps7:r (3.08) BS02 FES N/A N/A N/A 41663403
    1047118 9ps7:s (3.08) BS01 rna N/A N/A N/A 41663403
    1047119 9ps7:z (3.08) BS01 rna N/A N/A N/A 41663403
    1047120 9ps7:z (3.08) BS02 rna N/A N/A N/A 41663403
    1047121 9ps8:A (2.97) BS01 CA N/A GO:0016020 ... Q6AXS0 40931067
    1047122 9ps8:C (2.97) BS01 CA N/A GO:0016020 ... Q6AXS0 40931067
    1047123 9psa:A (2.86) BS01 rna N/A N/A Q9U2G4 41495898
    1047124 9psb:A (3.25) BS01 rna N/A N/A Q9U2G4 41495898
    1047125 9psc:A (2.4) BS01 rna N/A N/A Q9U2G4 41495898
    1047126 9psi:0 (3.12) BS01 rna N/A N/A N/A 41663403
    1047127 9psi:0 (3.12) BS02 ZN N/A N/A N/A 41663403
    1047128 9psi:1 (3.12) BS01 rna N/A N/A N/A 41663403
    1047129 9psi:2 (3.12) BS01 rna N/A N/A N/A 41663403
    1047130 9psi:3 (3.12) BS01 rna N/A N/A N/A 41663403
    1047131 9psi:4 (3.12) BS01 rna N/A N/A N/A 41663403
    1047132 9psi:4 (3.12) BS02 ZN N/A N/A N/A 41663403
    1047133 9psi:5 (3.12) BS01 rna N/A N/A N/A 41663403
    1047134 9psi:6 (3.12) BS01 rna N/A N/A N/A 41663403
    1047135 9psi:6 (3.12) BS02 rna N/A N/A N/A 41663403
    1047136 9psi:8 (3.12) BS01 rna N/A N/A N/A 41663403
    1047137 9psi:8 (3.12) BS02 rna N/A N/A N/A 41663403
    1047138 9psi:8 (3.12) BS03 rna N/A N/A N/A 41663403
    1047139 9psi:8 (3.12) BS04 rna N/A N/A N/A 41663403
    1047140 9psi:9 (3.12) BS01 rna N/A N/A N/A 41663403
    1047141 9psi:A0 (3.12) BS01 rna N/A N/A N/A 41663403
    1047142 9psi:A1 (3.12) BS01 rna N/A N/A N/A 41663403
    1047143 9psi:A2 (3.12) BS01 rna N/A N/A N/A 41663403
    1047144 9psi:A3 (3.12) BS01 rna N/A N/A N/A 41663403
    1047145 9psi:A4 (3.12) BS01 rna N/A N/A N/A 41663403
    1047146 9psi:AB (3.12) BS01 rna N/A N/A N/A 41663403
    1047147 9psi:AB (3.12) BS02 MG N/A N/A N/A 41663403
    1047148 9psi:AC (3.12) BS01 rna N/A N/A N/A 41663403
    1047149 9psi:AD (3.12) BS01 rna N/A N/A N/A 41663403
    1047150 9psi:AD (3.12) BS02 rna N/A N/A N/A 41663403
    1047151 9psi:AE (3.12) BS01 rna N/A N/A N/A 41663403
    1047152 9psi:AE (3.12) BS02 FES N/A N/A N/A 41663403
    1047153 9psi:AF (3.12) BS01 rna N/A N/A N/A 41663403
    1047154 9psi:AF (3.12) BS02 rna N/A N/A N/A 41663403
    1047155 9psi:AF (3.12) BS03 rna N/A N/A N/A 41663403
    1047156 9psi:AG (3.12) BS01 rna N/A N/A N/A 41663403
    1047157 9psi:AG (3.12) BS02 rna N/A N/A N/A 41663403
    1047158 9psi:AH (3.12) BS01 rna N/A N/A N/A 41663403
    1047159 9psi:AI (3.12) BS01 rna N/A N/A N/A 41663403
    1047160 9psi:AJ (3.12) BS01 rna N/A N/A N/A 41663403
    1047161 9psi:AK (3.12) BS01 rna N/A N/A N/A 41663403
    1047162 9psi:AL (3.12) BS01 rna N/A N/A N/A 41663403
    1047163 9psi:AM (3.12) BS01 rna N/A N/A N/A 41663403
    1047164 9psi:AM (3.12) BS02 FES N/A N/A N/A 41663403
    1047165 9psi:AN (3.12) BS01 rna N/A N/A N/A 41663403
    1047166 9psi:AO (3.12) BS01 rna N/A N/A N/A 41663403
    1047167 9psi:AO (3.12) BS02 ZN N/A N/A N/A 41663403
    1047168 9psi:AP (3.12) BS01 rna N/A N/A N/A 41663403
    1047169 9psi:AP (3.12) BS02 FES N/A N/A N/A 41663403
    1047170 9psi:AQ (3.12) BS01 rna N/A N/A N/A 41663403
    1047171 9psi:AS (3.12) BS01 rna N/A N/A N/A 41663403
    1047172 9psi:AT (3.12) BS01 rna N/A N/A N/A 41663403
    1047173 9psi:AT (3.12) BS02 FES N/A N/A N/A 41663403
    1047174 9psi:AU (3.12) BS01 rna N/A N/A N/A 41663403
    1047175 9psi:AV (3.12) BS01 rna N/A N/A N/A 41663403
    1047176 9psi:AX (3.12) BS01 rna N/A N/A N/A 41663403
    1047177 9psi:AX (3.12) BS02 ATP N/A N/A N/A 41663403
    1047178 9psi:AX (3.12) BS03 GDP N/A N/A N/A 41663403
    1047179 9psi:AZ (3.12) BS01 rna N/A N/A N/A 41663403
    1047180 9psi:D (3.12) BS01 rna N/A N/A N/A 41663403
    1047181 9psi:E (3.12) BS01 rna N/A N/A N/A 41663403
    1047182 9psi:F (3.12) BS01 rna N/A N/A N/A 41663403
    1047183 9psi:H (3.12) BS01 rna N/A N/A N/A 41663403
    1047184 9psi:I (3.12) BS01 rna N/A N/A N/A 41663403
    1047185 9psi:J (3.12) BS01 rna N/A N/A N/A 41663403
    1047186 9psi:K (3.12) BS01 rna N/A N/A N/A 41663403
    1047187 9psi:L (3.12) BS01 rna N/A N/A N/A 41663403
    1047188 9psi:M (3.12) BS01 rna N/A N/A N/A 41663403
    1047189 9psi:N (3.12) BS01 rna N/A N/A N/A 41663403
    1047190 9psi:O (3.12) BS01 rna N/A N/A N/A 41663403
    1047191 9psi:OX (3.12) BS01 rna N/A N/A N/A 41663403
    1047192 9psi:P (3.12) BS01 rna N/A N/A N/A 41663403
    1047193 9psi:P (3.12) BS02 rna N/A N/A N/A 41663403
    1047194 9psi:Q (3.12) BS01 rna N/A N/A N/A 41663403
    1047195 9psi:R (3.12) BS01 rna N/A N/A N/A 41663403
    1047196 9psi:S (3.12) BS01 rna N/A N/A N/A 41663403
    1047197 9psi:T (3.12) BS01 rna N/A N/A N/A 41663403
    1047198 9psi:U (3.12) BS01 rna N/A N/A N/A 41663403
    1047199 9psi:V (3.12) BS01 rna N/A N/A N/A 41663403
    1047200 9psi:W (3.12) BS01 rna N/A N/A N/A 41663403

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).