SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
  • Sort results by
    << < 5227 5228 5229 5230 5231 5232 5233 5234 5235 5236 5237 5238 5239 5240 5241 5242 5243 5244 5245 5246 5247 > >>
    Go to page

    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1047201 9psi:X (3.12) BS01 rna N/A N/A N/A 41663403
    1047202 9psi:Y (3.12) BS01 rna N/A N/A N/A 41663403
    1047203 9psi:Z (3.12) BS01 rna N/A N/A N/A 41663403
    1047204 9psi:a (3.12) BS01 rna N/A N/A N/A 41663403
    1047205 9psi:b (3.12) BS01 rna N/A N/A N/A 41663403
    1047206 9psi:c (3.12) BS01 rna N/A N/A N/A 41663403
    1047207 9psi:d (3.12) BS01 rna N/A N/A N/A 41663403
    1047208 9psi:e (3.12) BS01 rna N/A N/A N/A 41663403
    1047209 9psi:e (3.12) BS02 VAL N/A N/A N/A 41663403
    1047210 9psi:f (3.12) BS01 rna N/A N/A N/A 41663403
    1047211 9psi:f (3.12) BS02 rna N/A N/A N/A 41663403
    1047212 9psi:f (3.12) BS03 rna N/A N/A N/A 41663403
    1047213 9psi:g (3.12) BS01 rna N/A N/A N/A 41663403
    1047214 9psi:i (3.12) BS01 rna N/A N/A N/A 41663403
    1047215 9psi:j (3.12) BS01 rna N/A N/A N/A 41663403
    1047216 9psi:l (3.12) BS01 rna N/A N/A N/A 41663403
    1047217 9psi:m (3.12) BS01 rna N/A N/A N/A 41663403
    1047218 9psi:n (3.12) BS01 rna N/A N/A N/A 41663403
    1047219 9psi:o (3.12) BS01 rna N/A N/A N/A 41663403
    1047220 9psi:q (3.12) BS01 rna N/A N/A N/A 41663403
    1047221 9psi:q (3.12) BS02 rna N/A N/A N/A 41663403
    1047222 9psi:r (3.12) BS01 rna N/A N/A N/A 41663403
    1047223 9psi:r (3.12) BS02 FES N/A N/A N/A 41663403
    1047224 9psi:s (3.12) BS01 rna N/A N/A N/A 41663403
    1047225 9psi:z (3.12) BS01 rna N/A N/A N/A 41663403
    1047226 9psi:z (3.12) BS02 rna N/A N/A N/A 41663403
    1047227 9psm:0 (2.98) BS01 rna N/A N/A N/A 41663403
    1047228 9psm:0 (2.98) BS02 ZN N/A N/A N/A 41663403
    1047229 9psm:1 (2.98) BS01 rna N/A N/A N/A 41663403
    1047230 9psm:2 (2.98) BS01 rna N/A N/A N/A 41663403
    1047231 9psm:3 (2.98) BS01 rna N/A N/A N/A 41663403
    1047232 9psm:4 (2.98) BS01 rna N/A N/A N/A 41663403
    1047233 9psm:4 (2.98) BS02 ZN N/A N/A N/A 41663403
    1047234 9psm:5 (2.98) BS01 rna N/A N/A N/A 41663403
    1047235 9psm:6 (2.98) BS01 rna N/A N/A N/A 41663403
    1047236 9psm:6 (2.98) BS02 rna N/A N/A N/A 41663403
    1047237 9psm:8 (2.98) BS01 rna N/A N/A N/A 41663403
    1047238 9psm:8 (2.98) BS02 rna N/A N/A N/A 41663403
    1047239 9psm:8 (2.98) BS03 rna N/A N/A N/A 41663403
    1047240 9psm:9 (2.98) BS01 rna N/A N/A N/A 41663403
    1047241 9psm:A0 (2.98) BS01 rna N/A N/A N/A 41663403
    1047242 9psm:A1 (2.98) BS01 rna N/A N/A N/A 41663403
    1047243 9psm:A2 (2.98) BS01 rna N/A N/A N/A 41663403
    1047244 9psm:A3 (2.98) BS01 rna N/A N/A N/A 41663403
    1047245 9psm:A4 (2.98) BS01 rna N/A N/A N/A 41663403
    1047246 9psm:AB (2.98) BS01 rna N/A N/A N/A 41663403
    1047247 9psm:AB (2.98) BS02 MG N/A N/A N/A 41663403
    1047248 9psm:AC (2.98) BS01 rna N/A N/A N/A 41663403
    1047249 9psm:AD (2.98) BS01 rna N/A N/A N/A 41663403
    1047250 9psm:AD (2.98) BS02 rna N/A N/A N/A 41663403
    1047251 9psm:AE (2.98) BS01 rna N/A N/A N/A 41663403
    1047252 9psm:AE (2.98) BS02 FES N/A N/A N/A 41663403
    1047253 9psm:AF (2.98) BS01 rna N/A N/A N/A 41663403
    1047254 9psm:AF (2.98) BS02 rna N/A N/A N/A 41663403
    1047255 9psm:AG (2.98) BS01 rna N/A N/A N/A 41663403
    1047256 9psm:AG (2.98) BS02 rna N/A N/A N/A 41663403
    1047257 9psm:AG (2.98) BS03 rna N/A N/A N/A 41663403
    1047258 9psm:AH (2.98) BS01 rna N/A N/A N/A 41663403
    1047259 9psm:AI (2.98) BS01 rna N/A N/A N/A 41663403
    1047260 9psm:AJ (2.98) BS01 rna N/A N/A N/A 41663403
    1047261 9psm:AK (2.98) BS01 rna N/A N/A N/A 41663403
    1047262 9psm:AL (2.98) BS01 rna N/A N/A N/A 41663403
    1047263 9psm:AL (2.98) BS02 NAD N/A N/A N/A 41663403
    1047264 9psm:AM (2.98) BS01 rna N/A N/A N/A 41663403
    1047265 9psm:AM (2.98) BS02 FES N/A N/A N/A 41663403
    1047266 9psm:AN (2.98) BS01 rna N/A N/A N/A 41663403
    1047267 9psm:AO (2.98) BS01 rna N/A N/A N/A 41663403
    1047268 9psm:AO (2.98) BS02 ZN N/A N/A N/A 41663403
    1047269 9psm:AP (2.98) BS01 rna N/A N/A N/A 41663403
    1047270 9psm:AP (2.98) BS02 FES N/A N/A N/A 41663403
    1047271 9psm:AQ (2.98) BS01 rna N/A N/A N/A 41663403
    1047272 9psm:AS (2.98) BS01 rna N/A N/A N/A 41663403
    1047273 9psm:AT (2.98) BS01 rna N/A N/A N/A 41663403
    1047274 9psm:AT (2.98) BS02 FES N/A N/A N/A 41663403
    1047275 9psm:AU (2.98) BS01 rna N/A N/A N/A 41663403
    1047276 9psm:AV (2.98) BS01 rna N/A N/A N/A 41663403
    1047277 9psm:AX (2.98) BS01 rna N/A N/A N/A 41663403
    1047278 9psm:AX (2.98) BS02 ATP N/A N/A N/A 41663403
    1047279 9psm:AX (2.98) BS03 GDP N/A N/A N/A 41663403
    1047280 9psm:AZ (2.98) BS01 rna N/A N/A N/A 41663403
    1047281 9psm:C (2.98) BS01 rna N/A N/A N/A 41663403
    1047282 9psm:D (2.98) BS01 rna N/A N/A N/A 41663403
    1047283 9psm:E (2.98) BS01 rna N/A N/A N/A 41663403
    1047284 9psm:F (2.98) BS01 rna N/A N/A N/A 41663403
    1047285 9psm:H (2.98) BS01 rna N/A N/A N/A 41663403
    1047286 9psm:I (2.98) BS01 rna N/A N/A N/A 41663403
    1047287 9psm:J (2.98) BS01 rna N/A N/A N/A 41663403
    1047288 9psm:K (2.98) BS01 rna N/A N/A N/A 41663403
    1047289 9psm:L (2.98) BS01 rna N/A N/A N/A 41663403
    1047290 9psm:L (2.98) BS02 rna N/A N/A N/A 41663403
    1047291 9psm:M (2.98) BS01 rna N/A N/A N/A 41663403
    1047292 9psm:N (2.98) BS01 rna N/A N/A N/A 41663403
    1047293 9psm:N (2.98) BS02 rna N/A N/A N/A 41663403
    1047294 9psm:O (2.98) BS01 rna N/A N/A N/A 41663403
    1047295 9psm:OX (2.98) BS01 rna N/A N/A N/A 41663403
    1047296 9psm:P (2.98) BS01 rna N/A N/A N/A 41663403
    1047297 9psm:P (2.98) BS02 rna N/A N/A N/A 41663403
    1047298 9psm:Q (2.98) BS01 rna N/A N/A N/A 41663403
    1047299 9psm:R (2.98) BS01 rna N/A N/A N/A 41663403
    1047300 9psm:S (2.98) BS01 rna N/A N/A N/A 41663403
    1047301 9psm:T (2.98) BS01 rna N/A N/A N/A 41663403
    1047302 9psm:U (2.98) BS01 rna N/A N/A N/A 41663403
    1047303 9psm:V (2.98) BS01 rna N/A N/A N/A 41663403
    1047304 9psm:W (2.98) BS01 rna N/A N/A N/A 41663403
    1047305 9psm:X (2.98) BS01 rna N/A N/A N/A 41663403
    1047306 9psm:Y (2.98) BS01 rna N/A N/A N/A 41663403
    1047307 9psm:Z (2.98) BS01 rna N/A N/A N/A 41663403
    1047308 9psm:a (2.98) BS01 rna N/A N/A N/A 41663403
    1047309 9psm:b (2.98) BS01 rna N/A N/A N/A 41663403
    1047310 9psm:c (2.98) BS01 rna N/A N/A N/A 41663403
    1047311 9psm:d (2.98) BS01 rna N/A N/A N/A 41663403
    1047312 9psm:e (2.98) BS01 rna N/A N/A N/A 41663403
    1047313 9psm:e (2.98) BS02 VAL N/A N/A N/A 41663403
    1047314 9psm:f (2.98) BS01 rna N/A N/A N/A 41663403
    1047315 9psm:f (2.98) BS02 rna N/A N/A N/A 41663403
    1047316 9psm:g (2.98) BS01 rna N/A N/A N/A 41663403
    1047317 9psm:i (2.98) BS01 rna N/A N/A N/A 41663403
    1047318 9psm:j (2.98) BS01 rna N/A N/A N/A 41663403
    1047319 9psm:l (2.98) BS01 rna N/A N/A N/A 41663403
    1047320 9psm:m (2.98) BS01 rna N/A N/A N/A 41663403
    1047321 9psm:n (2.98) BS01 rna N/A N/A N/A 41663403
    1047322 9psm:o (2.98) BS01 rna N/A N/A N/A 41663403
    1047323 9psm:q (2.98) BS01 rna N/A N/A N/A 41663403
    1047324 9psm:q (2.98) BS02 rna N/A N/A N/A 41663403
    1047325 9psm:r (2.98) BS01 rna N/A N/A N/A 41663403
    1047326 9psm:r (2.98) BS02 FES N/A N/A N/A 41663403
    1047327 9psm:s (2.98) BS01 rna N/A N/A N/A 41663403
    1047328 9psm:z (2.98) BS01 rna N/A N/A N/A 41663403
    1047329 9pss:A (1.93) BS01 A1CKP N/A N/A Q9NWZ3 41531974
    1047330 9pss:B (1.93) BS01 A1CKP N/A N/A Q9NWZ3 41531974
    1047331 9pst:A (2.12) BS01 A1CKQ N/A N/A Q9NWZ3 41531974
    1047332 9pst:B (2.12) BS01 A1CKQ N/A N/A Q9NWZ3 41531974
    1047333 9pst:C (2.12) BS01 A1CKQ N/A N/A Q9NWZ3 41531974
    1047334 9pst:D (2.12) BS01 A1CKQ N/A N/A Q9NWZ3 41531974
    1047335 9psu:A (2.43) BS01 A1CKS N/A N/A Q9NWZ3 41531974
    1047336 9psu:B (2.43) BS01 A1CKS N/A N/A Q9NWZ3 41531974
    1047337 9psu:C (2.43) BS01 A1CKS N/A N/A Q9NWZ3 41531974
    1047338 9psu:D (2.43) BS01 A1CKS N/A N/A Q9NWZ3 41531974
    1047339 9psv:A (1.51) BS01 A1CKU N/A GO:0001523 ... P50120 N/A
    1047340 9psv:B (1.51) BS01 A1CKU N/A GO:0001523 ... P50120 N/A
    1047341 9psw:A (1.61) BS01 A1CKV N/A GO:0001523 ... P50120 N/A
    1047342 9psx:A (1.29) BS01 A1CKW N/A GO:0001523 ... P50120 N/A
    1047343 9psy:A (1.62) BS01 A1CKX N/A GO:0001523 ... P50120 N/A
    1047344 9psy:B (1.62) BS01 A1CKX N/A GO:0001523 ... P50120 N/A
    1047345 9psz:A (1.37) BS01 A1CKY N/A GO:0001523 ... P50120 N/A
    1047346 9pt0:A (1.64) BS01 A1CKZ N/A GO:0001523 ... P50120 N/A
    1047347 9pt1:A (1.48) BS01 A1CK0 N/A GO:0001523 ... P50120 N/A
    1047348 9pt3:A (1.79) BS01 A1CK1 N/A GO:0001523 ... P50120 N/A
    1047349 9pt3:B (1.79) BS01 A1CK1 N/A GO:0001523 ... P50120 N/A
    1047350 9pt3:C (1.79) BS01 A1CK1 N/A GO:0001523 ... P50120 N/A
    1047351 9pt3:D (1.79) BS01 A1CK1 N/A GO:0001523 ... P50120 N/A
    1047352 9ptg:A (2.8) BS01 rna N/A N/A Q9U2G4 41495898
    1047353 9ptj:A (2.8) BS01 rna N/A N/A Q9U2G4 41495898
    1047354 9ptm:A (3.4) BS01 peptide N/A N/A P08191 41298446
    1047355 9ptq:A (1.56) BS01 OJC N/A N/A N/A 40894804
    1047356 9ptq:B (1.56) BS01 OJC N/A N/A N/A 40894804
    1047357 9ptq:C (1.56) BS01 OJC N/A N/A N/A 40894804
    1047358 9ptq:E (1.56) BS01 OJC N/A N/A N/A 40894804
    1047359 9pua:J (0.944) BS01 A1CK6 N/A GO:0009374 ... P22629 41210276
    1047360 9pua:L (0.944) BS01 A1CK6 N/A GO:0009374 ... P22629 41210276
    1047361 9pub:J (0.953) BS01 BTN N/A GO:0009374 ... P22629 41210276
    1047362 9pub:K (0.953) BS01 BTN N/A GO:0009374 ... P22629 41210276
    1047363 9puh:A (2.39) BS01 ZN N/A N/A P0DTD1 41521555
    1047364 9puh:B (2.39) BS01 A1CLE N/A N/A P0DTD1 41521555
    1047365 9puh:B (2.39) BS02 ZN N/A N/A P0DTD1 41521555
    1047366 9puh:D (2.39) BS01 A1CLE N/A N/A P0DTD1 41521555
    1047367 9puh:D (2.39) BS02 ZN N/A N/A P0DTD1 41521555
    1047368 9puj:A (2.0) BS01 ZN N/A N/A P0DTD1 41521555
    1047369 9puj:A (2.0) BS02 A1CLF N/A N/A P0DTD1 41521555
    1047370 9puy:A (1.75) BS01 ZN N/A N/A P0DTD1 41521555
    1047371 9puy:A (1.75) BS02 A1CLD N/A N/A P0DTD1 41521555
    1047372 9puy:B (1.75) BS01 ZN N/A N/A P0DTD1 41521555
    1047373 9puy:B (1.75) BS02 A1CLD N/A N/A P0DTD1 41521555
    1047374 9puy:C (1.75) BS01 ZN N/A N/A P0DTD1 41521555
    1047375 9puy:C (1.75) BS02 A1CLD N/A N/A P0DTD1 41521555
    1047376 9puy:D (1.75) BS01 ZN N/A N/A P0DTD1 41521555
    1047377 9puy:D (1.75) BS02 A1CLD N/A N/A P0DTD1 41521555
    1047378 9pv6:A (1.45) BS01 ZN N/A N/A P0DTD1 41521555
    1047379 9pv6:A (1.45) BS02 A1CLN N/A N/A P0DTD1 41521555
    1047380 9pv9:A (2.0) BS01 ZN N/A N/A P0DTD1 41521555
    1047381 9pv9:A (2.0) BS02 A1CLP N/A N/A P0DTD1 41521555
    1047382 9pvg:A (3.0) BS01 peptide N/A N/A Q9BSQ5 N/A
    1047383 9pvg:B (3.0) BS01 peptide N/A N/A Q9BSQ5 N/A
    1047384 9pvg:C (3.0) BS01 peptide N/A N/A Q9BSQ5 N/A
    1047385 9pvg:D (3.0) BS01 peptide N/A N/A Q9BSQ5 N/A
    1047386 9pvi:A (1.8) BS01 A1CLO N/A N/A P0DTD1 41521555
    1047387 9pvk:A (1.8) BS01 ZN N/A N/A P0DTD1 41521555
    1047388 9pvk:A (1.8) BS02 A1CLL N/A N/A P0DTD1 41521555
    1047389 9pw6:A (2.068) BS01 A1CL3 N/A GO:0042981 ... Q07820 40864607
    1047390 9pw6:B (2.068) BS01 A1CL3 N/A GO:0042981 ... Q07820 40864607
    1047391 9pw7:A (1.95) BS01 GLC N/A GO:0008643 ... Q07820 40864607
    1047392 9pw7:A (1.95) BS02 GLC N/A GO:0008643 ... Q07820 40864607
    1047393 9pw7:A (1.95) BS03 A1CL6 N/A GO:0008643 ... Q07820 40864607
    1047394 9pw8:A (2.8) BS01 A1CLY N/A N/A Q9UK73 41229306
    1047395 9pw8:B (2.8) BS01 A1CLY N/A N/A Q9UK73 41229306
    1047396 9pwj:A (3.0) BS01 A1CL1 N/A N/A Q9UK73 41229306
    1047397 9pwk:A (1.51) BS01 NAP N/A GO:0004146 ... P0ABQ4 N/A
    1047398 9pwm:A (0.89) BS01 NAP N/A GO:0004146 ... P0ABQ4 N/A
    1047399 9pwm:A (0.89) BS02 MN N/A GO:0004146 ... P0ABQ4 N/A
    1047400 9pwn:H (1.8) BS01 peptide N/A N/A N/A 40803893

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).