SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1047601 9q0y:A (3.19) BS02 HEM N/A N/A N/A 41719409
    1047602 9q0y:A (3.19) BS03 FAD N/A N/A N/A 41719409
    1047603 9q0y:A (3.19) BS04 FMN N/A N/A N/A 41719409
    1047604 9q13:A (1.72) BS01 A1CNJ N/A N/A P12497 41448052
    1047605 9q13:B (1.72) BS01 A1CNJ N/A N/A P12497 41448052
    1047606 9q15:A (3.08) BS01 HEM N/A N/A N/A 41719409
    1047607 9q15:A (3.08) BS02 HEM N/A N/A N/A 41719409
    1047608 9q15:A (3.08) BS03 FAD N/A N/A N/A 41719409
    1047609 9q15:A (3.08) BS04 FMN N/A N/A N/A 41719409
    1047610 9q15:B (3.08) BS01 HEM N/A N/A N/A 41719409
    1047611 9q15:B (3.08) BS02 HEM N/A N/A N/A 41719409
    1047612 9q1a:A (2.83) BS01 B12 N/A GO:0031419 ... Q8RBT2 N/A
    1047613 9q1a:B (2.83) BS01 B12 N/A GO:0031419 ... Q8RBT2 N/A
    1047614 9q1c:A (1.94) BS01 A1CNK N/A N/A P12497 41448052
    1047615 9q1c:B (1.94) BS01 A1CNK N/A N/A P12497 41448052
    1047616 9q1f:A (2.65) BS01 1SY N/A GO:0003796 ... P00720 40950183
    1047617 9q1f:B (2.65) BS01 1SY N/A GO:0003796 ... P00720 40950183
    1047618 9q1g:A (3.703) BS01 A1CNQ N/A N/A O75626 41284831
    1047619 9q1g:B (3.703) BS01 A1CNQ N/A N/A O75626 41284831
    1047620 9q1g:C (3.703) BS01 A1CNQ N/A N/A O75626 41284831
    1047621 9q1g:D (3.703) BS01 A1CNQ N/A N/A O75626 41284831
    1047622 9q1g:E (3.703) BS01 A1CNQ N/A N/A O75626 41284831
    1047623 9q1g:F (3.703) BS01 A1CNQ N/A N/A O75626 41284831
    1047624 9q1g:G (3.703) BS01 A1CNQ N/A N/A O75626 41284831
    1047625 9q1g:H (3.703) BS01 A1CNQ N/A N/A O75626 41284831
    1047626 9q1j:A (2.81) BS01 ZN N/A GO:0003723 ... P0DTD1 41032524
    1047627 9q1j:B (2.81) BS01 rna N/A GO:0000175 ... P0DTD1 41032524
    1047628 9q1j:B (2.81) BS02 MG N/A GO:0000175 ... P0DTD1 41032524
    1047629 9q1j:B (2.81) BS03 ZN N/A GO:0000175 ... P0DTD1 41032524
    1047630 9q1j:B (2.81) BS04 ZN N/A GO:0000175 ... P0DTD1 41032524
    1047631 9q1j:B (2.81) BS05 ZN N/A GO:0000175 ... P0DTD1 41032524
    1047632 9q1j:C (2.81) BS01 ZN N/A GO:0003723 ... P0DTD1 41032524
    1047633 9q1j:C (2.81) BS02 ZN N/A GO:0003723 ... P0DTD1 41032524
    1047634 9q1j:D (2.81) BS01 rna N/A GO:0000175 ... P0DTD1 41032524
    1047635 9q1j:D (2.81) BS02 rna N/A GO:0000175 ... P0DTD1 41032524
    1047636 9q1j:D (2.81) BS03 MG N/A GO:0000175 ... P0DTD1 41032524
    1047637 9q1j:D (2.81) BS04 ZN N/A GO:0000175 ... P0DTD1 41032524
    1047638 9q1j:D (2.81) BS05 ZN N/A GO:0000175 ... P0DTD1 41032524
    1047639 9q1j:D (2.81) BS06 ZN N/A GO:0000175 ... P0DTD1 41032524
    1047640 9q1j:G (2.81) BS01 ZN N/A GO:0003723 ... P0DTD1 41032524
    1047641 9q1j:H (2.81) BS01 rna N/A GO:0000175 ... P0DTD1 41032524
    1047642 9q1j:H (2.81) BS02 MG N/A GO:0000175 ... P0DTD1 41032524
    1047643 9q1j:H (2.81) BS03 ZN N/A GO:0000175 ... P0DTD1 41032524
    1047644 9q1j:H (2.81) BS04 ZN N/A GO:0000175 ... P0DTD1 41032524
    1047645 9q1j:H (2.81) BS05 ZN N/A GO:0000175 ... P0DTD1 41032524
    1047646 9q1j:I (2.81) BS01 ZN N/A GO:0003723 ... P0DTD1 41032524
    1047647 9q1j:I (2.81) BS02 ZN N/A GO:0003723 ... P0DTD1 41032524
    1047648 9q1j:J (2.81) BS01 rna N/A GO:0000175 ... P0DTD1 41032524
    1047649 9q1j:J (2.81) BS02 rna N/A GO:0000175 ... P0DTD1 41032524
    1047650 9q1j:J (2.81) BS03 MG N/A GO:0000175 ... P0DTD1 41032524
    1047651 9q1j:J (2.81) BS04 ZN N/A GO:0000175 ... P0DTD1 41032524
    1047652 9q1j:J (2.81) BS05 ZN N/A GO:0000175 ... P0DTD1 41032524
    1047653 9q1j:J (2.81) BS06 ZN N/A GO:0000175 ... P0DTD1 41032524
    1047654 9q1m:A (2.6) BS01 IU8 N/A N/A Q15562 40864874
    1047655 9q1m:B (2.6) BS01 IU8 N/A N/A Q15562 40864874
    1047656 9q1n:A (2.13) BS01 EI2 N/A N/A Q15562 40864874
    1047657 9q1n:B (2.13) BS01 EI2 N/A N/A Q15562 40864874
    1047658 9q1o:A (2.26) BS01 EI6 N/A N/A Q15562 40864874
    1047659 9q1o:B (2.26) BS01 EI6 N/A N/A Q15562 40864874
    1047660 9q1p:A (1.87) BS01 A1CNO N/A N/A P12497 41448052
    1047661 9q1p:B (1.87) BS01 A1CNO N/A N/A P12497 41448052
    1047662 9q22:B (3.406) BS01 peptide N/A GO:0005515 ... Q96SW2 40994183
    1047663 9q22:B (3.406) BS02 A1CNP N/A GO:0005515 ... Q96SW2 40994183
    1047664 9q22:B (3.406) BS03 ZN N/A GO:0005515 ... Q96SW2 40994183
    1047665 9q23:C (2.84) BS01 dna N/A GO:0000400 ... O43502 N/A
    1047666 9q23:C (2.84) BS02 ADP N/A GO:0000400 ... O43502 N/A
    1047667 9q23:C (2.84) BS03 ATP N/A GO:0000400 ... O43502 N/A
    1047668 9q23:D (2.84) BS01 dna N/A GO:0000400 ... O75771 N/A
    1047669 9q23:D (2.84) BS02 ATP N/A GO:0000400 ... O75771 N/A
    1047670 9q23:D (2.84) BS03 ATP N/A GO:0000400 ... O75771 N/A
    1047671 9q23:G (2.84) BS01 ADP N/A GO:0000150 ... Q06609 N/A
    1047672 9q23:R (2.84) BS01 dna N/A GO:0000400 ... O43542 N/A
    1047673 9q23:R (2.84) BS02 ADP N/A GO:0000400 ... O43542 N/A
    1047674 9q23:R (2.84) BS03 MG N/A GO:0000400 ... O43542 N/A
    1047675 9q23:R (2.84) BS04 ADP N/A GO:0000400 ... O43542 N/A
    1047676 9q23:X (2.84) BS01 ATP N/A GO:0000278 ... O43543 N/A
    1047677 9q25:C (3.24) BS01 dna N/A GO:0000400 ... O43502 N/A
    1047678 9q25:C (3.24) BS02 ADP N/A GO:0000400 ... O43502 N/A
    1047679 9q25:C (3.24) BS03 ATP N/A GO:0000400 ... O43502 N/A
    1047680 9q25:D (3.24) BS01 dna N/A GO:0000400 ... O75771 N/A
    1047681 9q25:D (3.24) BS02 ATP N/A GO:0000400 ... O75771 N/A
    1047682 9q25:D (3.24) BS03 ATP N/A GO:0000400 ... O75771 N/A
    1047683 9q25:G (3.24) BS01 ADP N/A GO:0000150 ... Q06609 N/A
    1047684 9q25:R (3.24) BS01 ADP N/A GO:0000400 ... O43542 N/A
    1047685 9q25:R (3.24) BS02 ADP N/A GO:0000400 ... O43542 N/A
    1047686 9q25:X (3.24) BS01 ATP N/A GO:0000278 ... O43543 N/A
    1047687 9q28:C (2.84) BS01 dna N/A GO:0000400 ... O43502 N/A
    1047688 9q28:C (2.84) BS02 ADP N/A GO:0000400 ... O43502 N/A
    1047689 9q28:C (2.84) BS03 ATP N/A GO:0000400 ... O43502 N/A
    1047690 9q28:D (2.84) BS01 dna N/A GO:0000400 ... O75771 N/A
    1047691 9q28:D (2.84) BS02 ATP N/A GO:0000400 ... O75771 N/A
    1047692 9q28:D (2.84) BS03 ATP N/A GO:0000400 ... O75771 N/A
    1047693 9q28:G (2.84) BS01 dna N/A GO:0000150 ... Q06609 N/A
    1047694 9q28:G (2.84) BS02 ADP N/A GO:0000150 ... Q06609 N/A
    1047695 9q28:G (2.84) BS03 ADP N/A GO:0000150 ... Q06609 N/A
    1047696 9q28:I (2.84) BS01 ADP N/A GO:0000150 ... Q06609 N/A
    1047697 9q28:R (2.84) BS01 dna N/A GO:0000400 ... O43542 N/A
    1047698 9q28:R (2.84) BS02 ADP N/A GO:0000400 ... O43542 N/A
    1047699 9q28:R (2.84) BS03 ADP N/A GO:0000400 ... O43542 N/A
    1047700 9q28:R (2.84) BS04 MG N/A GO:0000400 ... O43542 N/A
    1047701 9q28:X (2.84) BS01 dna N/A GO:0000278 ... O43543 N/A
    1047702 9q28:X (2.84) BS02 ATP N/A GO:0000278 ... O43543 N/A
    1047703 9q29:C (2.61) BS01 dna N/A GO:0000400 ... O43502 N/A
    1047704 9q29:C (2.61) BS02 ADP N/A GO:0000400 ... O43502 N/A
    1047705 9q29:C (2.61) BS03 ATP N/A GO:0000400 ... O43502 N/A
    1047706 9q29:D (2.61) BS01 dna N/A GO:0000400 ... O75771 N/A
    1047707 9q29:D (2.61) BS02 ATP N/A GO:0000400 ... O75771 N/A
    1047708 9q29:D (2.61) BS03 ATP N/A GO:0000400 ... O75771 N/A
    1047709 9q29:D (2.61) BS04 CA N/A GO:0000400 ... O75771 N/A
    1047710 9q29:G (2.61) BS01 dna N/A GO:0000150 ... Q06609 N/A
    1047711 9q29:G (2.61) BS02 ATP N/A GO:0000150 ... Q06609 N/A
    1047712 9q29:G (2.61) BS03 CA N/A GO:0000150 ... Q06609 N/A
    1047713 9q29:G (2.61) BS04 ATP N/A GO:0000150 ... Q06609 N/A
    1047714 9q29:I (2.61) BS01 dna N/A GO:0000150 ... Q06609 N/A
    1047715 9q29:I (2.61) BS02 ATP N/A GO:0000150 ... Q06609 N/A
    1047716 9q29:I (2.61) BS03 CA N/A GO:0000150 ... Q06609 N/A
    1047717 9q29:I (2.61) BS04 CA N/A GO:0000150 ... Q06609 N/A
    1047718 9q29:I (2.61) BS05 ATP N/A GO:0000150 ... Q06609 N/A
    1047719 9q29:J (2.61) BS01 dna N/A GO:0000150 ... Q06609 N/A
    1047720 9q29:J (2.61) BS02 ATP N/A GO:0000150 ... Q06609 N/A
    1047721 9q29:J (2.61) BS03 CA N/A GO:0000150 ... Q06609 N/A
    1047722 9q29:J (2.61) BS04 ATP N/A GO:0000150 ... Q06609 N/A
    1047723 9q29:K (2.61) BS01 dna N/A GO:0000150 ... Q06609 N/A
    1047724 9q29:K (2.61) BS02 ATP N/A GO:0000150 ... Q06609 N/A
    1047725 9q29:K (2.61) BS03 ATP N/A GO:0000150 ... Q06609 N/A
    1047726 9q29:K (2.61) BS04 CA N/A GO:0000150 ... Q06609 N/A
    1047727 9q29:L (2.61) BS01 dna N/A GO:0000150 ... Q06609 N/A
    1047728 9q29:L (2.61) BS02 ATP N/A GO:0000150 ... Q06609 N/A
    1047729 9q29:L (2.61) BS03 CA N/A GO:0000150 ... Q06609 N/A
    1047730 9q29:R (2.61) BS01 dna N/A GO:0000400 ... O43542 N/A
    1047731 9q29:R (2.61) BS02 ADP N/A GO:0000400 ... O43542 N/A
    1047732 9q29:R (2.61) BS03 ATP N/A GO:0000400 ... O43542 N/A
    1047733 9q29:X (2.61) BS01 dna N/A GO:0000278 ... O43543 N/A
    1047734 9q29:X (2.61) BS02 ATP N/A GO:0000278 ... O43543 N/A
    1047735 9q2a:A (2.67) BS01 dna N/A GO:0000400 ... O43502 N/A
    1047736 9q2a:A (2.67) BS02 ADP N/A GO:0000400 ... O43502 N/A
    1047737 9q2a:A (2.67) BS03 ATP N/A GO:0000400 ... O43502 N/A
    1047738 9q2a:B (2.67) BS01 dna N/A GO:0000400 ... O15315 N/A
    1047739 9q2a:B (2.67) BS02 ATP N/A GO:0000400 ... O15315 N/A
    1047740 9q2a:B (2.67) BS03 ATP N/A GO:0000400 ... O15315 N/A
    1047741 9q2a:C (2.67) BS01 dna N/A GO:0000400 ... O43502 N/A
    1047742 9q2a:C (2.67) BS02 ATP N/A GO:0000400 ... O43502 N/A
    1047743 9q2a:C (2.67) BS03 ATP N/A GO:0000400 ... O43502 N/A
    1047744 9q2a:D (2.67) BS01 dna N/A GO:0000400 ... O75771 N/A
    1047745 9q2a:D (2.67) BS02 ATP N/A GO:0000400 ... O75771 N/A
    1047746 9q2a:D (2.67) BS03 ATP N/A GO:0000400 ... O75771 N/A
    1047747 9q2a:G (2.67) BS01 dna N/A GO:0000150 ... Q06609 N/A
    1047748 9q2a:G (2.67) BS02 ATP N/A GO:0000150 ... Q06609 N/A
    1047749 9q2a:R (2.67) BS01 dna N/A GO:0000400 ... O43542 N/A
    1047750 9q2a:R (2.67) BS02 ADP N/A GO:0000400 ... O43542 N/A
    1047751 9q2a:R (2.67) BS03 ATP N/A GO:0000400 ... O43542 N/A
    1047752 9q2a:X (2.67) BS01 dna N/A GO:0000278 ... O43543 N/A
    1047753 9q2a:X (2.67) BS02 ATP N/A GO:0000278 ... O43543 N/A
    1047754 9q2d:B (2.94) BS01 peptide N/A GO:0005515 ... Q96SW2 40994183
    1047755 9q2d:B (2.94) BS02 ZN N/A GO:0005515 ... Q96SW2 40994183
    1047756 9q2d:B (2.94) BS03 85C N/A GO:0005515 ... Q96SW2 40994183
    1047757 9q2r:C (4.2) BS01 ADP N/A N/A Q2FWW9 41249510
    1047758 9q2r:D (4.2) BS01 ADP N/A N/A Q2FWW9 41249510
    1047759 9q2r:D (4.2) BS02 ADP N/A N/A Q2FWW9 41249510
    1047760 9q31:A (2.05) BS01 A1CNU N/A GO:0004672 ... Q13546 41165210
    1047761 9q31:B (2.05) BS01 TME N/A GO:0004672 ... Q13546 41165210
    1047762 9q31:B (2.05) BS02 A1CNU N/A GO:0004672 ... Q13546 41165210
    1047763 9q32:A (2.49) BS01 A1CNV N/A GO:0004672 ... Q13546 41165210
    1047764 9q32:B (2.49) BS01 A1CNV N/A GO:0004672 ... Q13546 41165210
    1047765 9q32:C (2.49) BS01 A1CNV N/A GO:0004672 ... Q13546 41165210
    1047766 9q32:D (2.49) BS01 A1CNV N/A GO:0004672 ... Q13546 41165210
    1047767 9q33:A (3.2) BS01 A1CN1 N/A N/A O75626 41284831
    1047768 9q33:B (3.2) BS01 ZN N/A GO:0005515 ... Q96SW2 41284831
    1047769 9q33:B (3.2) BS02 A1CN1 N/A GO:0005515 ... Q96SW2 41284831
    1047770 9q36:A (2.1) BS01 FES N/A GO:0005829 ... P33007 41400399
    1047771 9q36:B (2.1) BS01 FES N/A GO:0005829 ... P33007 41400399
    1047772 9q39:A (3.24) BS01 HEC N/A N/A B3LRE1
    P00044
    N/A
    1047773 9q39:A (3.24) BS02 HEM N/A N/A B3LRE1
    P00044
    N/A
    1047774 9q3a:A (2.77) BS01 ZN N/A GO:0000166 ... Q8JMN0 41495888
    1047775 9q3f:A (3.3) BS01 rna N/A GO:0000932 ... Q9UL18 N/A
    1047776 9q3g:A (3.3) BS01 rna N/A GO:0000932 ... Q9UL18 N/A
    1047777 9q3h:A (1.89) BS01 GAL N/A N/A A8AWU7 N/A
    1047778 9q3h:A (1.89) BS02 SIA N/A N/A A8AWU7 N/A
    1047779 9q3h:A (1.89) BS03 CA N/A N/A A8AWU7 N/A
    1047780 9q3h:B (1.89) BS01 GAL N/A N/A A8AWU7 N/A
    1047781 9q3h:B (1.89) BS02 SIA N/A N/A A8AWU7 N/A
    1047782 9q3h:B (1.89) BS03 VP1 N/A N/A A8AWU7 N/A
    1047783 9q3h:B (1.89) BS04 CA N/A N/A A8AWU7 N/A
    1047784 9q3k:A (2.2) BS01 4EY N/A GO:0050043 ... N/A 40894700
    1047785 9q3k:B (2.2) BS01 4EY N/A GO:0050043 ... N/A 40894700
    1047786 9q3k:C (2.2) BS01 4EY N/A GO:0050043 ... N/A 40894700
    1047787 9q3k:D (2.2) BS01 4EY N/A GO:0050043 ... N/A 40894700
    1047788 9q3k:E (2.2) BS01 4EY N/A GO:0050043 ... N/A 40894700
    1047789 9q3k:F (2.2) BS01 4EY N/A GO:0050043 ... N/A 40894700
    1047790 9q3k:G (2.2) BS01 4EY N/A GO:0050043 ... N/A 40894700
    1047791 9q3k:H (2.2) BS01 4EY N/A GO:0050043 ... N/A 40894700
    1047792 9q3p:A (1.9) BS01 A1CNY N/A N/A P12497 41448052
    1047793 9q3p:B (1.9) BS01 A1CNY N/A N/A P12497 41448052
    1047794 9q3t:A (1.87) BS01 A1CNZ N/A N/A P12497 41448052
    1047795 9q3t:B (1.87) BS01 A1CNZ N/A N/A P12497 41448052
    1047796 9q45:A (1.79) BS01 TFB N/A GO:0004735 ... P32322 41569420
    1047797 9q45:A (1.79) BS02 NAI N/A GO:0004735 ... P32322 41569420
    1047798 9q45:A (1.79) BS03 A1CFK N/A GO:0004735 ... P32322 41569420
    1047799 9q45:B (1.79) BS01 A1CFK N/A GO:0004735 ... P32322 41569420
    1047800 9q45:B (1.79) BS02 NAI N/A GO:0004735 ... P32322 41569420

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).