SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1048201 9q58:B (2.03) BS04 H4B N/A GO:0004517 ... P29474 41630196
    1048202 9q58:B (2.03) BS05 A1CN9 N/A GO:0004517 ... P29474 41630196
    1048203 9q58:C (2.03) BS01 HEM N/A GO:0004517 ... P29474 41630196
    1048204 9q58:C (2.03) BS02 H4B N/A GO:0004517 ... P29474 41630196
    1048205 9q58:C (2.03) BS03 A1CN9 N/A GO:0004517 ... P29474 41630196
    1048206 9q58:C (2.03) BS04 ZN N/A GO:0004517 ... P29474 41630196
    1048207 9q58:C (2.03) BS05 H4B N/A GO:0004517 ... P29474 41630196
    1048208 9q58:D (2.03) BS01 H4B N/A GO:0004517 ... P29474 41630196
    1048209 9q58:D (2.03) BS02 ZN N/A GO:0004517 ... P29474 41630196
    1048210 9q58:D (2.03) BS03 HEM N/A GO:0004517 ... P29474 41630196
    1048211 9q58:D (2.03) BS04 H4B N/A GO:0004517 ... P29474 41630196
    1048212 9q58:D (2.03) BS05 A1CN9 N/A GO:0004517 ... P29474 41630196
    1048213 9q5b:A (2.05) BS01 GG5 N/A GO:0000165 ... Q16539 N/A
    1048214 9q5b:A (2.05) BS02 A1CRZ N/A GO:0000165 ... Q16539 N/A
    1048215 9q5d:A (1.94) BS01 A1COE N/A N/A P12497 41448052
    1048216 9q5d:B (1.94) BS01 A1COE N/A N/A P12497 41448052
    1048217 9q5e:A (1.29) BS01 MBG N/A N/A A8AWU7 N/A
    1048218 9q5e:A (1.29) BS02 SIA N/A N/A A8AWU7 N/A
    1048219 9q5e:A (1.29) BS03 CA N/A N/A A8AWU7 N/A
    1048220 9q5u:A (2.5) BS01 CA N/A N/A A4SJA3 N/A
    1048221 9q5u:A (2.5) BS02 CA N/A N/A A4SJA3 N/A
    1048222 9q5u:A (2.5) BS03 CA N/A N/A A4SJA3 N/A
    1048223 9q5u:A (2.5) BS04 CA N/A N/A A4SJA3 N/A
    1048224 9q5u:A (2.5) BS05 CA N/A N/A A4SJA3 N/A
    1048225 9q5x:A (1.41) BS01 A1CQT N/A GO:0002003 ... P48147 41512187
    1048226 9q5x:B (1.41) BS01 A1CQT N/A GO:0002003 ... P48147 41512187
    1048227 9q5x:C (1.41) BS01 A1CQT N/A GO:0002003 ... P48147 41512187
    1048228 9q5y:A (1.49) BS01 A1CQR N/A GO:0002003 ... P48147 41512187
    1048229 9q5y:B (1.49) BS01 A1CQR N/A GO:0002003 ... P48147 41512187
    1048230 9q5y:C (1.49) BS01 A1CQR N/A GO:0002003 ... P48147 41512187
    1048231 9q5z:A (1.41) BS01 A1CQS N/A GO:0002003 ... P48147 41512187
    1048232 9q5z:B (1.41) BS01 A1CQS N/A GO:0002003 ... P48147 41512187
    1048233 9q5z:C (1.41) BS01 A1CQS N/A GO:0002003 ... P48147 41512187
    1048234 9q61:A (2.13) BS01 HEM N/A GO:0004517 ... P29476 41630196
    1048235 9q61:A (2.13) BS02 H4B N/A GO:0004517 ... P29476 41630196
    1048236 9q61:A (2.13) BS03 A1CN4 N/A GO:0004517 ... P29476 41630196
    1048237 9q61:A (2.13) BS04 ZN N/A GO:0004517 ... P29476 41630196
    1048238 9q62:A (1.83) BS01 A1CQQ N/A GO:0002003 ... P48147 41512187
    1048239 9q62:B (1.83) BS01 A1CQQ N/A GO:0002003 ... P48147 41512187
    1048240 9q62:C (1.83) BS01 A1CQQ N/A GO:0002003 ... P48147 41512187
    1048241 9q64:A (1.94) BS01 A1CQV N/A GO:0002003 ... P48147 41512187
    1048242 9q64:B (1.94) BS01 A1CQV N/A GO:0002003 ... P48147 41512187
    1048243 9q64:C (1.94) BS01 A1CQV N/A GO:0002003 ... P48147 41512187
    1048244 9q65:B (1.89) BS01 A1CQU N/A GO:0002003 ... P48147 41512187
    1048245 9q65:D (1.89) BS01 A1CQU N/A GO:0002003 ... P48147 41512187
    1048246 9q65:F (1.89) BS01 A1CQU N/A GO:0002003 ... P48147 41512187
    1048247 9q66:A (2.01) BS01 A1CQP N/A GO:0002003 ... P48147 41512187
    1048248 9q66:B (2.01) BS01 A1CQP N/A GO:0002003 ... P48147 41512187
    1048249 9q66:C (2.01) BS01 A1CQP N/A GO:0002003 ... P48147 41512187
    1048250 9q6j:A (1.75) BS01 A1CQ0 N/A GO:0002003 ... P48147 41512187
    1048251 9q6j:B (1.75) BS01 A1CQ0 N/A GO:0002003 ... P48147 41512187
    1048252 9q6j:C (1.75) BS01 A1CQ0 N/A GO:0002003 ... P48147 41512187
    1048253 9q6k:A (1.85) BS01 A1CQZ N/A GO:0002003 ... P48147 41512187
    1048254 9q6k:B (1.85) BS01 A1CQZ N/A GO:0002003 ... P48147 41512187
    1048255 9q6k:C (1.85) BS01 A1CQZ N/A GO:0002003 ... P48147 41512187
    1048256 9q6l:A (1.66) BS01 A1CQY N/A GO:0002003 ... P48147 41512187
    1048257 9q6l:B (1.66) BS01 A1CQY N/A GO:0002003 ... P48147 41512187
    1048258 9q6l:C (1.66) BS01 A1CQY N/A GO:0002003 ... P48147 41512187
    1048259 9q6x:A (1.66) BS01 A1CQ1 N/A GO:0002003 ... P48147 41512187
    1048260 9q6x:B (1.66) BS01 A1CQ1 N/A GO:0002003 ... P48147 41512187
    1048261 9q6x:C (1.66) BS01 A1CQ1 N/A GO:0002003 ... P48147 41512187
    1048262 9q72:A (1.25) BS01 LRM N/A GO:0000340 ... Q38B99 41265746
    1048263 9q73:A (1.66) BS01 PDO N/A GO:0000340 ... Q38B99 41265746
    1048264 9q74:A (1.57) BS01 LRM N/A GO:0000340 ... Q38B99 41265746
    1048265 9q75:A (1.77) BS01 LRM N/A GO:0000340 ... A0A2V2XI07 41265746
    1048266 9q75:C (1.77) BS01 LRM N/A GO:0000340 ... A0A2V2XI07 41265746
    1048267 9q75:C (1.77) BS02 LRM N/A GO:0000340 ... A0A2V2XI07 41265746
    1048268 9q75:D (1.77) BS01 LRM N/A N/A A0A2V2UXK5 41265746
    1048269 9q75:E (1.77) BS01 LRM N/A GO:0000340 ... A0A2V2XI07 41265746
    1048270 9q79:A (2.3) BS01 LRM N/A N/A A0A2V2VTW2 41265746
    1048271 9q79:C (2.3) BS01 LRM N/A N/A A0A2V2VTW2 41265746
    1048272 9q79:E (2.3) BS01 LRM N/A N/A A0A2V2VTW2 41265746
    1048273 9q79:F (2.3) BS01 LRM N/A N/A A0A2V2VHI6 41265746
    1048274 9q7k:A (3.13) BS01 ADP N/A GO:0000287 ... P68135 N/A
    1048275 9q7k:B (3.13) BS01 ADP N/A GO:0000287 ... P68135 N/A
    1048276 9q7k:C (3.13) BS01 ADP N/A GO:0000287 ... P68135 N/A
    1048277 9q7k:D (3.13) BS01 ADP N/A GO:0000287 ... P68135 N/A
    1048278 9q7k:E (3.13) BS01 ADP N/A GO:0000287 ... P68135 N/A
    1048279 9q7l:A (3.68) BS01 ADP N/A GO:0000287 ... P68135 N/A
    1048280 9q7l:B (3.68) BS01 ADP N/A GO:0000287 ... P68135 N/A
    1048281 9q7l:C (3.68) BS01 ADP N/A GO:0000287 ... P68135 N/A
    1048282 9q7l:D (3.68) BS01 ADP N/A GO:0000287 ... P68135 N/A
    1048283 9q7l:E (3.68) BS01 ADP N/A GO:0000287 ... P68135 N/A
    1048284 9q7m:A (3.5) BS01 ADP N/A GO:0000287 ... P68135 N/A
    1048285 9q7m:B (3.5) BS01 ADP N/A GO:0000287 ... P68135 N/A
    1048286 9q7m:C (3.5) BS01 ADP N/A GO:0000287 ... P68135 N/A
    1048287 9q7m:D (3.5) BS01 ADP N/A GO:0000287 ... P68135 N/A
    1048288 9q7m:E (3.5) BS01 ADP N/A GO:0000287 ... P68135 N/A
    1048289 9q7n:A (3.48) BS01 ADP N/A GO:0000287 ... P68135 N/A
    1048290 9q7n:B (3.48) BS01 ADP N/A GO:0000287 ... P68135 N/A
    1048291 9q7n:C (3.48) BS01 ADP N/A GO:0000287 ... P68135 N/A
    1048292 9q7n:D (3.48) BS01 ADP N/A GO:0000287 ... P68135 N/A
    1048293 9q7n:E (3.48) BS01 ADP N/A GO:0000287 ... P68135 N/A
    1048294 9q7o:A (3.02) BS01 ADP N/A GO:0000287 ... P68135 N/A
    1048295 9q7o:B (3.02) BS01 ADP N/A GO:0000287 ... P68135 N/A
    1048296 9q7o:C (3.02) BS01 ADP N/A GO:0000287 ... P68135 N/A
    1048297 9q7o:D (3.02) BS01 ADP N/A GO:0000287 ... P68135 N/A
    1048298 9q7o:E (3.02) BS01 ADP N/A GO:0000287 ... P68135 N/A
    1048299 9q7q:0 (2.86) BS01 rna N/A GO:0003735 ... G1SK22 N/A
    1048300 9q7q:1 (2.86) BS01 rna N/A N/A N/A N/A
    1048301 9q7q:6 (2.86) BS01 rna N/A GO:0001891 ... G1SJB4 N/A
    1048302 9q7q:9 (2.86) BS01 rna N/A GO:0002181 ... G1U7M4 N/A
    1048303 9q7q:A (2.86) BS01 rna N/A GO:0002181 ... G1TT27 N/A
    1048304 9q7q:A (2.86) BS02 rna N/A GO:0002181 ... G1TT27 N/A
    1048305 9q7q:A (2.86) BS03 MG N/A GO:0002181 ... G1TT27 N/A
    1048306 9q7q:AA (2.86) BS01 rna N/A GO:0005634 ... G1T8A2 N/A
    1048307 9q7q:AB (2.86) BS01 rna N/A GO:0005737 ... G1SG72 N/A
    1048308 9q7q:B (2.86) BS01 rna N/A GO:0003723 ... G1TL06 N/A
    1048309 9q7q:BB (2.86) BS01 rna N/A GO:0003735 ... G1SVB0 N/A
    1048310 9q7q:C (2.86) BS01 rna N/A GO:0005737 ... G1SVW5 N/A
    1048311 9q7q:C (2.86) BS02 rna N/A GO:0005737 ... G1SVW5 N/A
    1048312 9q7q:CC (2.86) BS01 rna N/A N/A G1TJW1 N/A
    1048313 9q7q:CC (2.86) BS02 rna N/A N/A G1TJW1 N/A
    1048314 9q7q:D (2.86) BS01 rna N/A GO:0000027 ... P19949 N/A
    1048315 9q7q:D (2.86) BS02 rna N/A GO:0000027 ... P19949 N/A
    1048316 9q7q:DD (2.86) BS01 rna N/A GO:0003735 ... B7NZS8 N/A
    1048317 9q7q:E (2.86) BS01 rna N/A GO:0000027 ... G1SKF7 N/A
    1048318 9q7q:EE (2.86) BS01 rna N/A GO:0003735 ... G1TRM4 N/A
    1048319 9q7q:F (2.86) BS01 rna N/A GO:0000463 ... A0AAG1W3S3 N/A
    1048320 9q7q:F (2.86) BS02 rna N/A GO:0000463 ... A0AAG1W3S3 N/A
    1048321 9q7q:FF (2.86) BS01 rna N/A GO:0000028 ... G1TIB4 N/A
    1048322 9q7q:G (2.86) BS01 rna N/A GO:0005737 ... G1STW0 N/A
    1048323 9q7q:G (2.86) BS02 rna N/A GO:0005737 ... G1STW0 N/A
    1048324 9q7q:GG (2.86) BS01 rna N/A GO:0003735 ... G1SIZ2 N/A
    1048325 9q7q:H (2.86) BS01 rna N/A GO:0002181 ... G1SWI6 N/A
    1048326 9q7q:I (2.86) BS01 rna N/A GO:0005737 ... B7NZQ2 N/A
    1048327 9q7q:I (2.86) BS02 rna N/A GO:0005737 ... B7NZQ2 N/A
    1048328 9q7q:I (2.86) BS03 rna N/A GO:0005737 ... B7NZQ2 N/A
    1048329 9q7q:II (2.86) BS01 rna N/A GO:0003735 ... G1TPG3 N/A
    1048330 9q7q:J (2.86) BS01 rna N/A GO:0005730 ... G1TUB8 N/A
    1048331 9q7q:J (2.86) BS02 rna N/A GO:0005730 ... G1TUB8 N/A
    1048332 9q7q:JJ (2.86) BS01 rna N/A GO:0003735 ... G1TZ76 N/A
    1048333 9q7q:KK (2.86) BS01 rna N/A GO:0003735 ... G1TU13 N/A
    1048334 9q7q:L (2.86) BS01 rna N/A N/A G1TKB3 N/A
    1048335 9q7q:L (2.86) BS02 rna N/A N/A G1TKB3 N/A
    1048336 9q7q:LL (2.86) BS01 rna N/A N/A G1TFE8 N/A
    1048337 9q7q:LL (2.86) BS02 ZN N/A N/A G1TFE8 N/A
    1048338 9q7q:M (2.86) BS01 rna N/A N/A G1SZ12 N/A
    1048339 9q7q:MM (2.86) BS01 rna N/A GO:0003735 ... G1T1F0 N/A
    1048340 9q7q:N (2.86) BS01 rna N/A GO:0002181 ... G1T0C1 N/A
    1048341 9q7q:N (2.86) BS02 rna N/A GO:0002181 ... G1T0C1 N/A
    1048342 9q7q:NN (2.86) BS01 rna N/A GO:0005730 ... A0A5F9D2E6 N/A
    1048343 9q7q:O (2.86) BS01 rna N/A GO:0003729 ... G1TVS8 N/A
    1048344 9q7q:OO (2.86) BS01 rna N/A GO:0003735 ... G1TDB3 N/A
    1048345 9q7q:P (2.86) BS01 rna N/A N/A G1SCJ6 N/A
    1048346 9q7q:P (2.86) BS02 rna N/A N/A G1SCJ6 N/A
    1048347 9q7q:PP (2.86) BS01 rna N/A GO:0000028 ... G1TN62 N/A
    1048348 9q7q:PP (2.86) BS02 MG N/A GO:0000028 ... G1TN62 N/A
    1048349 9q7q:Q (2.86) BS01 rna N/A N/A G1TFE0 N/A
    1048350 9q7q:QQ (2.86) BS01 rna N/A GO:0003735 ... G1SP51 N/A
    1048351 9q7q:QQ (2.86) BS02 rna N/A GO:0003735 ... G1SP51 N/A
    1048352 9q7q:R (2.86) BS01 rna N/A N/A G1TYL6 N/A
    1048353 9q7q:R (2.86) BS02 rna N/A N/A G1TYL6 N/A
    1048354 9q7q:RF (2.86) BS01 rna N/A GO:0003747 ... P62497 N/A
    1048355 9q7q:RF (2.86) BS02 rna N/A GO:0003747 ... P62497 N/A
    1048356 9q7q:RF (2.86) BS03 rna N/A GO:0003747 ... P62497 N/A
    1048357 9q7q:RF (2.86) BS04 rna N/A GO:0003747 ... P62497 N/A
    1048358 9q7q:RR (2.86) BS01 rna N/A GO:0003735 ... G1SFR8 N/A
    1048359 9q7q:S (2.86) BS01 rna N/A GO:0005737 ... G1TTY7 N/A
    1048360 9q7q:S (2.86) BS02 rna N/A GO:0005737 ... G1TTY7 N/A
    1048361 9q7q:SS (2.86) BS01 rna N/A GO:0003723 ... G1TPV3 N/A
    1048362 9q7q:T (2.86) BS01 rna N/A GO:0005737 ... G1SHQ2 N/A
    1048363 9q7q:T (2.86) BS02 rna N/A GO:0005737 ... G1SHQ2 N/A
    1048364 9q7q:TT (2.86) BS01 rna N/A GO:0003735 ... G1TG89 N/A
    1048365 9q7q:U (2.86) BS01 rna N/A N/A G1TSG1 N/A
    1048366 9q7q:UU (2.86) BS01 rna N/A GO:0000462 ... G1SGX4 N/A
    1048367 9q7q:V (2.86) BS01 rna N/A GO:0000122 ... G1T6D1 N/A
    1048368 9q7q:VV (2.86) BS01 rna N/A GO:0003735 ... G1SZ47 N/A
    1048369 9q7q:W (2.86) BS01 rna N/A GO:0002181 ... G1SE28 N/A
    1048370 9q7q:WW (2.86) BS01 rna N/A GO:0000028 ... G1U0Q2 N/A
    1048371 9q7q:X (2.86) BS01 rna N/A GO:0005634 ... G1SE76 N/A
    1048372 9q7q:X (2.86) BS02 rna N/A GO:0005634 ... G1SE76 N/A
    1048373 9q7q:Y (2.86) BS01 rna N/A GO:0003735 ... G1SQH0 N/A
    1048374 9q7q:Y (2.86) BS02 rna N/A GO:0003735 ... G1SQH0 N/A
    1048375 9q7q:Z (2.86) BS01 rna N/A GO:0002181 ... G1TXF6 N/A
    1048376 9q7q:a (2.86) BS01 rna N/A GO:0003735 ... G1SNY0 N/A
    1048377 9q7q:b (2.86) BS01 rna N/A GO:0002181 ... G1SGR6 N/A
    1048378 9q7q:c (2.86) BS01 rna N/A GO:0005737 ... G1TDL2 N/A
    1048379 9q7q:d (2.86) BS01 rna N/A GO:0002181 ... G1SHG0 N/A
    1048380 9q7q:e (2.86) BS01 rna N/A N/A A0AAG1WVT3 N/A
    1048381 9q7q:f (2.86) BS01 rna N/A GO:0005737 ... G1SF08 N/A
    1048382 9q7q:g (2.86) BS01 rna N/A GO:0005737 ... G1TXG5 N/A
    1048383 9q7q:g (2.86) BS02 ZN N/A GO:0005737 ... G1TXG5 N/A
    1048384 9q7q:g (2.86) BS03 MG N/A GO:0005737 ... G1TXG5 N/A
    1048385 9q7q:h (2.86) BS01 rna N/A GO:0000463 ... G1SIT5 N/A
    1048386 9q7q:h (2.86) BS02 rna N/A GO:0000463 ... G1SIT5 N/A
    1048387 9q7q:i (2.86) BS01 rna N/A GO:0005737 ... G1TTQ5 N/A
    1048388 9q7q:j (2.86) BS01 rna N/A GO:0002181 ... U3KPD5 N/A
    1048389 9q7q:j (2.86) BS02 rna N/A GO:0002181 ... U3KPD5 N/A
    1048390 9q7q:j (2.86) BS03 ZN N/A GO:0002181 ... U3KPD5 N/A
    1048391 9q7q:k (2.86) BS01 rna N/A N/A G1U001 N/A
    1048392 9q7q:l (2.86) BS01 rna N/A GO:0022625 ... G1TTN1 N/A
    1048393 9q7q:l (2.86) BS02 rna N/A GO:0022625 ... G1TTN1 N/A
    1048394 9q7q:m (2.86) BS01 rna N/A GO:0005634 ... P0DXC2 N/A
    1048395 9q7q:m (2.86) BS02 ZN N/A GO:0005634 ... P0DXC2 N/A
    1048396 9q7q:o (2.86) BS01 rna N/A N/A A0AAA9WX15 N/A
    1048397 9q7q:o (2.86) BS02 ZN N/A N/A A0AAA9WX15 N/A
    1048398 9q7q:p (2.86) BS01 rna N/A GO:0005737 ... G1SY53 N/A
    1048399 9q7q:p (2.86) BS02 ZN N/A GO:0005737 ... G1SY53 N/A
    1048400 9q7q:q (2.86) BS01 rna N/A N/A G1TLT8 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).