SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1048401 9q7q:r (2.86) BS01 rna N/A GO:0005737 ... G1U7L1 N/A
    1048402 9q7q:s (2.86) BS01 rna N/A GO:0000027 ... G1SPK4 N/A
    1048403 9q7q:t (2.86) BS01 rna N/A GO:0003735 ... G1SMR7 N/A
    1048404 9q7q:u (2.86) BS01 rna N/A GO:0003735 ... G1SS70 N/A
    1048405 9q7q:v (2.86) BS01 rna N/A N/A G1SWM1 N/A
    1048406 9q7q:w (2.86) BS01 rna N/A GO:0003735 ... G1TNM3 N/A
    1048407 9q7q:x (2.86) BS01 rna N/A N/A G1TK17 N/A
    1048408 9q7q:y (2.86) BS01 rna N/A GO:0003735 ... G1TFM5 N/A
    1048409 9q7q:y (2.86) BS02 MG N/A GO:0003735 ... G1TFM5 N/A
    1048410 9q7q:z (2.86) BS01 rna N/A GO:0003735 ... G1TM55 N/A
    1048411 9q7s:A (2.7) BS01 A1CR4 N/A N/A P0DTD1 41614164
    1048412 9q7u:A (3.4) BS01 dna N/A GO:0000786 ... A0A310TTQ1 N/A
    1048413 9q7u:A (3.4) BS02 dna N/A GO:0000786 ... A0A310TTQ1 N/A
    1048414 9q7u:B (3.4) BS01 dna N/A GO:0000786 ... P62799 N/A
    1048415 9q7u:B (3.4) BS02 dna N/A GO:0000786 ... P62799 N/A
    1048416 9q7u:C (3.4) BS01 dna N/A GO:0000786 ... P06897 N/A
    1048417 9q7u:C (3.4) BS02 dna N/A GO:0000786 ... P06897 N/A
    1048418 9q7u:D (3.4) BS01 dna N/A GO:0000786 ... P02281 N/A
    1048419 9q7u:D (3.4) BS02 dna N/A GO:0000786 ... P02281 N/A
    1048420 9q7u:E (3.4) BS01 dna N/A GO:0000786 ... A0A310TTQ1 N/A
    1048421 9q7u:E (3.4) BS02 dna N/A GO:0000786 ... A0A310TTQ1 N/A
    1048422 9q7u:F (3.4) BS01 dna N/A GO:0000786 ... P62799 N/A
    1048423 9q7u:F (3.4) BS02 dna N/A GO:0000786 ... P62799 N/A
    1048424 9q7u:G (3.4) BS01 dna N/A GO:0000786 ... P06897 N/A
    1048425 9q7u:G (3.4) BS02 dna N/A GO:0000786 ... P06897 N/A
    1048426 9q7u:H (3.4) BS01 dna N/A GO:0000786 ... P02281 N/A
    1048427 9q7u:H (3.4) BS02 dna N/A GO:0000786 ... P02281 N/A
    1048428 9q7u:K (3.4) BS01 dna N/A N/A Q9Y6K1 N/A
    1048429 9q7u:K (3.4) BS02 dna N/A N/A Q9Y6K1 N/A
    1048430 9q7u:K (3.4) BS03 ZN N/A N/A Q9Y6K1 N/A
    1048431 9q7u:K (3.4) BS04 ZN N/A N/A Q9Y6K1 N/A
    1048432 9q7u:K (3.4) BS05 ZN N/A N/A Q9Y6K1 N/A
    1048433 9q7u:K (3.4) BS06 SAO N/A N/A Q9Y6K1 N/A
    1048434 9q7u:L (3.4) BS01 dna N/A N/A Q9Y6K1 N/A
    1048435 9q7u:L (3.4) BS02 dna N/A N/A Q9Y6K1 N/A
    1048436 9q7u:L (3.4) BS03 ZN N/A N/A Q9Y6K1 N/A
    1048437 9q7u:L (3.4) BS04 ZN N/A N/A Q9Y6K1 N/A
    1048438 9q7u:L (3.4) BS05 ZN N/A N/A Q9Y6K1 N/A
    1048439 9q7u:L (3.4) BS06 SAO N/A N/A Q9Y6K1 N/A
    1048440 9q7u:V (3.4) BS01 ZN N/A N/A Q9UBC3 N/A
    1048441 9q7u:V (3.4) BS02 ZN N/A N/A Q9UBC3 N/A
    1048442 9q7v:A (2.356) BS01 dna N/A GO:0004519 ... N/A N/A
    1048443 9q7v:A (2.356) BS02 dna N/A GO:0004519 ... N/A N/A
    1048444 9q7v:A (2.356) BS03 CA N/A GO:0004519 ... N/A N/A
    1048445 9q7v:A (2.356) BS04 CA N/A GO:0004519 ... N/A N/A
    1048446 9q7w:A (2.537) BS01 dna N/A GO:0004519 ... Q4VWW5 N/A
    1048447 9q7w:A (2.537) BS02 dna N/A GO:0004519 ... Q4VWW5 N/A
    1048448 9q7w:A (2.537) BS03 CA N/A GO:0004519 ... Q4VWW5 N/A
    1048449 9q7w:A (2.537) BS04 CA N/A GO:0004519 ... Q4VWW5 N/A
    1048450 9q7x:A (2.95) BS01 CJA N/A GO:0006470 ... Q9Y6W6 N/A
    1048451 9q7x:B (2.95) BS01 CJA N/A GO:0006470 ... Q9Y6W6 N/A
    1048452 9q7x:C (2.95) BS01 CJA N/A GO:0006470 ... Q9Y6W6 N/A
    1048453 9q7x:D (2.95) BS01 CJA N/A GO:0006470 ... Q9Y6W6 N/A
    1048454 9q7x:E (2.95) BS01 CJA N/A GO:0006470 ... Q9Y6W6 N/A
    1048455 9q7x:E (2.95) BS02 CJA N/A GO:0006470 ... Q9Y6W6 N/A
    1048456 9q7x:F (2.95) BS01 CJA N/A GO:0006470 ... Q9Y6W6 N/A
    1048457 9q7z:A (3.319) BS01 dna N/A GO:0004519 ... N/A N/A
    1048458 9q7z:A (3.319) BS02 dna N/A GO:0004519 ... N/A N/A
    1048459 9q7z:A (3.319) BS03 dna N/A GO:0004519 ... N/A N/A
    1048460 9q7z:A (3.319) BS04 CA N/A GO:0004519 ... N/A N/A
    1048461 9q7z:A (3.319) BS05 CA N/A GO:0004519 ... N/A N/A
    1048462 9q7z:D (3.319) BS01 dna N/A GO:0004519 ... N/A N/A
    1048463 9q7z:D (3.319) BS02 dna N/A GO:0004519 ... N/A N/A
    1048464 9q80:A (3.39) BS01 dna N/A GO:0000786 ... P68431 41444611
    1048465 9q80:A (3.39) BS02 dna N/A GO:0000786 ... P68431 41444611
    1048466 9q80:B (3.39) BS01 dna N/A GO:0000781 ... P62805 41444611
    1048467 9q80:B (3.39) BS02 dna N/A GO:0000781 ... P62805 41444611
    1048468 9q80:C (3.39) BS01 dna N/A GO:0000077 ... P16104 41444611
    1048469 9q80:C (3.39) BS02 dna N/A GO:0000077 ... P16104 41444611
    1048470 9q80:D (3.39) BS01 dna N/A GO:0000786 ... P06899 41444611
    1048471 9q80:D (3.39) BS02 dna N/A GO:0000786 ... P06899 41444611
    1048472 9q80:E (3.39) BS01 dna N/A GO:0000786 ... P68431 41444611
    1048473 9q80:E (3.39) BS02 dna N/A GO:0000786 ... P68431 41444611
    1048474 9q80:F (3.39) BS01 dna N/A GO:0000781 ... P62805 41444611
    1048475 9q80:F (3.39) BS02 dna N/A GO:0000781 ... P62805 41444611
    1048476 9q80:G (3.39) BS01 dna N/A GO:0000077 ... P16104 41444611
    1048477 9q80:G (3.39) BS02 dna N/A GO:0000077 ... P16104 41444611
    1048478 9q80:H (3.39) BS01 dna N/A GO:0000786 ... P06899 41444611
    1048479 9q80:H (3.39) BS02 dna N/A GO:0000786 ... P06899 41444611
    1048480 9q80:K (3.39) BS01 dna N/A GO:0000723 ... P12956 41444611
    1048481 9q80:K (3.39) BS02 dna N/A GO:0000723 ... P12956 41444611
    1048482 9q80:L (3.39) BS01 dna N/A GO:0000723 ... P13010 41444611
    1048483 9q80:L (3.39) BS02 dna N/A GO:0000723 ... P13010 41444611
    1048484 9q80:M (3.39) BS01 dna N/A GO:0000723 ... P12956 41444611
    1048485 9q80:M (3.39) BS02 dna N/A GO:0000723 ... P12956 41444611
    1048486 9q80:N (3.39) BS01 dna N/A GO:0000723 ... P13010 41444611
    1048487 9q80:N (3.39) BS02 dna N/A GO:0000723 ... P13010 41444611
    1048488 9q85:A (3.62) BS01 rna N/A GO:0004519 ... G3ECR1 41702403
    1048489 9q85:A (3.62) BS02 rna N/A GO:0004519 ... G3ECR1 41702403
    1048490 9q85:A (3.62) BS03 dna N/A GO:0004519 ... G3ECR1 41702403
    1048491 9q85:A (3.62) BS04 dna N/A GO:0004519 ... G3ECR1 41702403
    1048492 9q85:F (3.62) BS01 peptide N/A GO:0004519 ... G3ECR2 41702403
    1048493 9q86:A (2.0) BS01 HEC N/A N/A G1UBD5 40843530
    1048494 9q86:A (2.0) BS02 NO N/A N/A G1UBD5 40843530
    1048495 9q86:B (2.0) BS01 HEC N/A N/A G1UBD5 40843530
    1048496 9q86:B (2.0) BS02 NO N/A N/A G1UBD5 40843530
    1048497 9q87:0 (1.55) BS01 rna N/A GO:0000027 ... P0A7N9 39791453
    1048498 9q87:1 (1.55) BS01 rna N/A GO:0002181 ... P0A7P5 39791453
    1048499 9q87:2 (1.55) BS01 rna N/A GO:0002181 ... P0A7Q1 39791453
    1048500 9q87:3 (1.55) BS01 rna N/A GO:0002181 ... P0A7Q6 39791453
    1048501 9q87:3 (1.55) BS02 ZN N/A GO:0002181 ... P0A7Q6 39791453
    1048502 9q87:5 (1.55) BS01 rna N/A GO:0000027 ... P0A7J7 39791453
    1048503 9q87:B (1.55) BS01 rna N/A GO:0000028 ... P0A7V0 39791453
    1048504 9q87:B (1.55) BS02 MG N/A GO:0000028 ... P0A7V0 39791453
    1048505 9q87:C (1.55) BS01 rna N/A GO:0000028 ... P0A7V3 39791453
    1048506 9q87:D (1.55) BS01 rna N/A GO:0000028 ... P0A7V8 39791453
    1048507 9q87:E (1.55) BS01 rna N/A GO:0000028 ... P0A7W1 39791453
    1048508 9q87:F (1.55) BS01 rna N/A GO:0002181 ... P02358 39791453
    1048509 9q87:G (1.55) BS01 rna N/A GO:0000028 ... P02359 39791453
    1048510 9q87:H (1.55) BS01 rna N/A GO:0000028 ... P0A7W7 39791453
    1048511 9q87:I (1.55) BS01 rna N/A GO:0002181 ... P0A7X3 39791453
    1048512 9q87:I (1.55) BS02 rna N/A GO:0002181 ... P0A7X3 39791453
    1048513 9q87:J (1.55) BS01 rna N/A GO:0000049 ... P0A7R5 39791453
    1048514 9q87:K (1.55) BS01 rna N/A GO:0002181 ... P0A7R9 39791453
    1048515 9q87:L (1.55) BS01 rna N/A GO:0000049 ... P0A7S3 39791453
    1048516 9q87:M (1.55) BS01 rna N/A GO:0000049 ... P0A7S9 39791453
    1048517 9q87:M (1.55) BS02 rna N/A GO:0000049 ... P0A7S9 39791453
    1048518 9q87:M (1.55) BS03 MG N/A GO:0000049 ... P0A7S9 39791453
    1048519 9q87:N (1.55) BS01 rna N/A GO:0000028 ... P0AG59 39791453
    1048520 9q87:O (1.55) BS01 rna N/A GO:0000028 ... P0ADZ4 39791453
    1048521 9q87:O (1.55) BS02 rna N/A GO:0000028 ... P0ADZ4 39791453
    1048522 9q87:P (1.55) BS01 rna N/A GO:0000028 ... P0A7T3 39791453
    1048523 9q87:Q (1.55) BS01 rna N/A GO:0000028 ... P0AG63 39791453
    1048524 9q87:R (1.55) BS01 rna N/A GO:0002181 ... P0A7T7 39791453
    1048525 9q87:S (1.55) BS01 rna N/A GO:0002181 ... P0A7U3 39791453
    1048526 9q87:T (1.55) BS01 rna N/A GO:0000028 ... P0A7U7 39791453
    1048527 9q87:U (1.55) BS01 rna N/A GO:0000028 ... P68679 39791453
    1048528 9q87:c (1.55) BS01 rna N/A GO:0000027 ... P60422 39791453
    1048529 9q87:d (1.55) BS01 rna N/A GO:0000027 ... P60438 39791453
    1048530 9q87:e (1.55) BS01 rna N/A GO:0001070 ... P60723 39791453
    1048531 9q87:f (1.55) BS01 rna N/A GO:0000027 ... P62399 39791453
    1048532 9q87:f (1.55) BS02 rna N/A GO:0000027 ... P62399 39791453
    1048533 9q87:f (1.55) BS03 rna N/A GO:0000027 ... P62399 39791453
    1048534 9q87:g (1.55) BS01 rna N/A GO:0000027 ... P0AG55 39791453
    1048535 9q87:h (1.55) BS01 rna N/A GO:0002181 ... P0A7R1 39791453
    1048536 9q87:i (1.55) BS01 rna N/A GO:0002181 ... P0AA10 39791453
    1048537 9q87:j (1.55) BS01 rna N/A GO:0002181 ... P0ADY3 39791453
    1048538 9q87:j (1.55) BS02 rna N/A GO:0002181 ... P0ADY3 39791453
    1048539 9q87:k (1.55) BS01 rna N/A GO:0002181 ... P02413 39791453
    1048540 9q87:l (1.55) BS01 rna N/A GO:0000027 ... P0ADY7 39791453
    1048541 9q87:l (1.55) BS02 rna N/A GO:0000027 ... P0ADY7 39791453
    1048542 9q87:m (1.55) BS01 rna N/A GO:0000027 ... P0AG44 39791453
    1048543 9q87:n (1.55) BS01 rna N/A GO:0002181 ... P0C018 39791453
    1048544 9q87:n (1.55) BS02 rna N/A GO:0002181 ... P0C018 39791453
    1048545 9q87:o (1.55) BS01 rna N/A GO:0000027 ... P0A7K6 39791453
    1048546 9q87:o (1.55) BS02 rna N/A GO:0000027 ... P0A7K6 39791453
    1048547 9q87:p (1.55) BS01 rna N/A GO:0000027 ... P0A7L3 39791453
    1048548 9q87:q (1.55) BS01 rna N/A GO:0002181 ... P0AG48 39791453
    1048549 9q87:r (1.55) BS01 rna N/A GO:0002181 ... P61175 39791453
    1048550 9q87:s (1.55) BS01 rna N/A GO:0000027 ... P0ADZ0 39791453
    1048551 9q87:t (1.55) BS01 rna N/A GO:0000027 ... P60624 39791453
    1048552 9q87:u (1.55) BS01 rna N/A GO:0000027 ... P68919 39791453
    1048553 9q87:v (1.55) BS01 rna N/A GO:0000027 ... P0A7L8 39791453
    1048554 9q87:v (1.55) BS02 rna N/A GO:0000027 ... P0A7L8 39791453
    1048555 9q87:w (1.55) BS01 rna N/A GO:0000027 ... P0A7M2 39791453
    1048556 9q87:x (1.55) BS01 rna N/A GO:0000027 ... P0A7M6 39791453
    1048557 9q87:y (1.55) BS01 rna N/A GO:0000027 ... P0AG51 39791453
    1048558 9q87:y (1.55) BS02 rna N/A GO:0000027 ... P0AG51 39791453
    1048559 9q87:z (1.55) BS01 rna N/A GO:0000027 ... P0A7N4 39791453
    1048560 9q88:A (1.2) BS01 ZN N/A N/A Q9H0F5 40763985
    1048561 9q88:A (1.2) BS02 ZN N/A N/A Q9H0F5 40763985
    1048562 9q8c:A (0.9) BS01 T9Y N/A GO:0000785 ... P19784 N/A
    1048563 9q8c:A (0.9) BS02 T9Y N/A GO:0000785 ... P19784 N/A
    1048564 9q8c:A (0.9) BS03 T9Y N/A GO:0000785 ... P19784 N/A
    1048565 9q8d:A (1.54) BS01 A1I4L N/A N/A Q99685 N/A
    1048566 9q8f:A (1.5) BS01 FAD N/A N/A Q9AAF5 40298610
    1048567 9q8f:A (1.5) BS02 DLZ N/A N/A Q9AAF5 40298610
    1048568 9q8f:A (1.5) BS03 SF4 N/A N/A Q9AAF5 40298610
    1048569 9q8h:A (1.802) BS01 SAM N/A GO:0004483 ... P0DTD1 N/A
    1048570 9q8h:A (1.802) BS02 A1I4H N/A GO:0004483 ... P0DTD1 N/A
    1048571 9q8h:B (1.802) BS01 ZN N/A GO:0003723 ... P0DTD1 N/A
    1048572 9q8h:B (1.802) BS02 ZN N/A GO:0003723 ... P0DTD1 N/A
    1048573 9q8i:B (2.35) BS01 SF4 N/A GO:0003954 ... P0AFC7 41265450
    1048574 9q8i:C (2.35) BS01 SF4 N/A GO:0003954 ... P33599 41265450
    1048575 9q8i:E (2.35) BS01 FES N/A GO:0003954 ... P0AFD1 41265450
    1048576 9q8i:F (2.35) BS01 SF4 N/A GO:0003954 ... P31979 41265450
    1048577 9q8i:F (2.35) BS02 FMN N/A GO:0003954 ... P31979 41265450
    1048578 9q8i:G (2.35) BS01 SF4 N/A GO:0003954 ... P33602 41265450
    1048579 9q8i:G (2.35) BS02 SF4 N/A GO:0003954 ... P33602 41265450
    1048580 9q8i:G (2.35) BS03 SF4 N/A GO:0003954 ... P33602 41265450
    1048581 9q8i:G (2.35) BS04 FES N/A GO:0003954 ... P33602 41265450
    1048582 9q8i:G (2.35) BS05 CA N/A GO:0003954 ... P33602 41265450
    1048583 9q8i:I (2.35) BS01 SF4 N/A GO:0003954 ... P0AFD6 41265450
    1048584 9q8i:I (2.35) BS02 SF4 N/A GO:0003954 ... P0AFD6 41265450
    1048585 9q8l:A (1.85) BS01 FUC N/A GO:0016020 ... Q15116 40664449
    1048586 9q8n:A (2.54) BS01 peptide N/A GO:0005515 ... Q83SQ0 41048016
    1048587 9q8n:A (2.54) BS02 Z41 N/A GO:0005515 ... Q83SQ0 41048016
    1048588 9q8n:B (2.54) BS01 Z41 N/A GO:0019867 ... Q83LX4 41048016
    1048589 9q8q:A (0.98) BS01 A1I4N N/A GO:0000785 ... P19784 N/A
    1048590 9q8u:A (1.76) BS01 8XI N/A GO:0005576 ... B3VHM9 41596427
    1048591 9q8x:A (2.94) BS01 dna N/A GO:0000786 ... P68431 41444611
    1048592 9q8x:A (2.94) BS02 dna N/A GO:0000786 ... P68431 41444611
    1048593 9q8x:B (2.94) BS01 dna N/A GO:0000781 ... P62805 41444611
    1048594 9q8x:B (2.94) BS02 dna N/A GO:0000781 ... P62805 41444611
    1048595 9q8x:C (2.94) BS01 dna N/A GO:0000077 ... P16104 41444611
    1048596 9q8x:C (2.94) BS02 dna N/A GO:0000077 ... P16104 41444611
    1048597 9q8x:D (2.94) BS01 dna N/A GO:0000786 ... P06899 41444611
    1048598 9q8x:D (2.94) BS02 dna N/A GO:0000786 ... P06899 41444611
    1048599 9q8x:E (2.94) BS01 dna N/A GO:0000786 ... P68431 41444611
    1048600 9q8x:E (2.94) BS02 dna N/A GO:0000786 ... P68431 41444611

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).