SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1049001 9qaz:A (3.6) BS01 rna N/A GO:0000049 ... O14746 40638752
    1049002 9qaz:A (3.6) BS02 dna N/A GO:0000049 ... O14746 40638752
    1049003 9qaz:L (3.6) BS01 rna N/A GO:0000786 ... B2R5B3 40638752
    1049004 9qaz:M (3.6) BS01 rna N/A GO:0000786 ... B4DR52 40638752
    1049005 9qb0:A (1.01) BS01 U8X N/A GO:0000785 ... P19784 N/A
    1049006 9qb1:G (2.8) BS01 MG N/A GO:0003674 ... P21243 41033310
    1049007 9qb1:H (2.8) BS01 peptide N/A GO:0004298 ... P25043 41033310
    1049008 9qb1:I (2.8) BS01 peptide N/A GO:0005515 ... P25451 41033310
    1049009 9qb1:K (2.8) BS01 peptide N/A GO:0004298 ... P30656 41033310
    1049010 9qb1:K (2.8) BS02 MG N/A GO:0004298 ... P30656 41033310
    1049011 9qb1:N (2.8) BS01 peptide N/A GO:0004175 ... P38624 41033310
    1049012 9qb1:N (2.8) BS02 MG N/A GO:0004175 ... P38624 41033310
    1049013 9qb1:V (2.8) BS01 peptide N/A GO:0004298 ... P25043 41033310
    1049014 9qb1:V (2.8) BS02 MG N/A GO:0004298 ... P25043 41033310
    1049015 9qb1:Y (2.8) BS01 peptide N/A GO:0004298 ... P30656 41033310
    1049016 9qb1:Y (2.8) BS02 MG N/A GO:0004298 ... P30656 41033310
    1049017 9qb1:Z (2.8) BS01 MG N/A GO:0003674 ... P23724 41033310
    1049018 9qb1:b (2.8) BS01 peptide N/A GO:0004175 ... P38624 41033310
    1049019 9qb2:C (3.0) BS01 rna N/A GO:0000455 ... O60832 40638752
    1049020 9qb2:C (3.0) BS02 rna N/A GO:0000455 ... O60832 40638752
    1049021 9qb2:E (3.0) BS01 rna N/A GO:0000454 ... Q9NX24 40638752
    1049022 9qb2:G (3.0) BS01 rna N/A GO:0000455 ... O60832 40638752
    1049023 9qb2:I (3.0) BS01 rna N/A GO:0000454 ... Q9NX24 40638752
    1049024 9qb2:J (3.0) BS01 rna N/A GO:0000454 ... Q9NPE3 40638752
    1049025 9qb2:K (3.0) BS01 rna N/A GO:0000781 ... Q9BUR4 40638752
    1049026 9qb3:C (3.9) BS01 rna N/A GO:0000455 ... O60832 40638752
    1049027 9qb3:C (3.9) BS02 rna N/A GO:0000455 ... O60832 40638752
    1049028 9qb3:E (3.9) BS01 rna N/A GO:0000454 ... Q9NX24 40638752
    1049029 9qb3:G (3.9) BS01 rna N/A GO:0000455 ... O60832 40638752
    1049030 9qb3:I (3.9) BS01 rna N/A GO:0000454 ... Q9NX24 40638752
    1049031 9qb3:J (3.9) BS01 rna N/A GO:0000454 ... Q9NPE3 40638752
    1049032 9qb3:K (3.9) BS01 rna N/A GO:0000781 ... Q9BUR4 40638752
    1049033 9qb3:c (3.9) BS01 rna N/A GO:0000455 ... O60832 40638752
    1049034 9qb3:c (3.9) BS02 rna N/A GO:0000455 ... O60832 40638752
    1049035 9qb3:e (3.9) BS01 rna N/A GO:0000454 ... Q9NX24 40638752
    1049036 9qb3:g (3.9) BS01 rna N/A GO:0000455 ... O60832 40638752
    1049037 9qb3:i (3.9) BS01 rna N/A GO:0000454 ... Q9NX24 40638752
    1049038 9qb3:j (3.9) BS01 rna N/A GO:0000454 ... Q9NPE3 40638752
    1049039 9qb3:k (3.9) BS01 rna N/A GO:0000781 ... Q9BUR4 40638752
    1049040 9qb4:G (2.7) BS01 MG N/A GO:0003674 ... P21243 41033310
    1049041 9qb4:H (2.7) BS01 peptide N/A GO:0004298 ... P25043 41033310
    1049042 9qb4:H (2.7) BS02 peptide N/A GO:0004298 ... P25043 41033310
    1049043 9qb4:K (2.7) BS01 peptide N/A GO:0004298 ... P30656 41033310
    1049044 9qb4:K (2.7) BS02 MG N/A GO:0004298 ... P30656 41033310
    1049045 9qb4:L (2.7) BS01 peptide N/A GO:0003674 ... P23724 41033310
    1049046 9qb4:N (2.7) BS01 peptide N/A GO:0004175 ... P38624 41033310
    1049047 9qb4:N (2.7) BS02 MG N/A GO:0004175 ... P38624 41033310
    1049048 9qb4:V (2.7) BS01 peptide N/A GO:0004298 ... P25043 41033310
    1049049 9qb4:V (2.7) BS02 peptide N/A GO:0004298 ... P25043 41033310
    1049050 9qb4:V (2.7) BS03 MG N/A GO:0004298 ... P25043 41033310
    1049051 9qb4:Y (2.7) BS01 peptide N/A GO:0004298 ... P30656 41033310
    1049052 9qb4:Y (2.7) BS02 MG N/A GO:0004298 ... P30656 41033310
    1049053 9qb4:Z (2.7) BS01 peptide N/A GO:0003674 ... P23724 41033310
    1049054 9qb4:Z (2.7) BS02 MG N/A GO:0003674 ... P23724 41033310
    1049055 9qb4:b (2.7) BS01 peptide N/A GO:0004175 ... P38624 41033310
    1049056 9qb5:A (2.0) BS01 F7I N/A GO:0004672 ... Q2M2I8 40882436
    1049057 9qb5:B (2.0) BS01 F7I N/A GO:0004672 ... Q2M2I8 40882436
    1049058 9qb6:A (1.05) BS01 RDV N/A GO:0000785 ... P19784 N/A
    1049059 9qb6:A (1.05) BS02 3NG N/A GO:0000785 ... P19784 N/A
    1049060 9qb8:A (3.4) BS01 MN N/A GO:0004197 ... Q9RM48 40562750
    1049061 9qb9:A (1.19) BS01 SGN N/A GO:0000785 ... P19784 N/A
    1049062 9qb9:A (1.19) BS02 IDS N/A GO:0000785 ... P19784 N/A
    1049063 9qb9:A (1.19) BS03 A1I5N N/A GO:0000785 ... P19784 N/A
    1049064 9qba:A (1.45) BS01 A1I41 N/A N/A P19474 40514378
    1049065 9qbe:G (2.8) BS01 MG N/A GO:0003674 ... P21243 41033310
    1049066 9qbe:H (2.8) BS01 peptide N/A GO:0004298 ... P25043 41033310
    1049067 9qbe:K (2.8) BS01 peptide N/A GO:0004298 ... P30656 41033310
    1049068 9qbe:K (2.8) BS02 MG N/A GO:0004298 ... P30656 41033310
    1049069 9qbe:N (2.8) BS01 peptide N/A GO:0004175 ... P38624 41033310
    1049070 9qbe:N (2.8) BS02 MG N/A GO:0004175 ... P38624 41033310
    1049071 9qbe:V (2.8) BS01 peptide N/A GO:0004298 ... P25043 41033310
    1049072 9qbe:V (2.8) BS02 MG N/A GO:0004298 ... P25043 41033310
    1049073 9qbe:Y (2.8) BS01 peptide N/A GO:0004298 ... P30656 41033310
    1049074 9qbe:Y (2.8) BS02 MG N/A GO:0004298 ... P30656 41033310
    1049075 9qbe:Z (2.8) BS01 MG N/A GO:0003674 ... P23724 41033310
    1049076 9qbe:b (2.8) BS01 peptide N/A GO:0004175 ... P38624 41033310
    1049077 9qbi:G (2.6) BS01 MG N/A GO:0003674 ... P21243 41033310
    1049078 9qbi:W (2.6) BS01 MG N/A GO:0005515 ... P25451 41033310
    1049079 9qbj:I (3.2) BS01 BGC N/A GO:0005618 ... P02976
    P19909
    N/A
    1049080 9qbj:I (3.2) BS02 GLC N/A GO:0005618 ... P02976
    P19909
    N/A
    1049081 9qbj:J (3.2) BS01 BGC N/A GO:0005618 ... P02976
    P19909
    N/A
    1049082 9qbj:J (3.2) BS02 GLC N/A GO:0005618 ... P02976
    P19909
    N/A
    1049083 9qbm:A (2.95) BS01 A1I47 N/A N/A Q8KRS7 N/A
    1049084 9qbm:A (2.95) BS02 A1I47 N/A N/A Q8KRS7 N/A
    1049085 9qbm:B (2.95) BS01 A1I47 N/A N/A Q8KRS7 N/A
    1049086 9qbm:B (2.95) BS02 A1I47 N/A N/A Q8KRS7 N/A
    1049087 9qbm:C (2.95) BS01 A1I47 N/A N/A Q8KRS7 N/A
    1049088 9qbm:C (2.95) BS02 A1I46 N/A N/A Q8KRS7 N/A
    1049089 9qbo:G (2.8) BS01 MG N/A GO:0003674 ... P21243 41033310
    1049090 9qbo:H (2.8) BS01 peptide N/A GO:0004298 ... P25043 41033310
    1049091 9qbo:K (2.8) BS01 peptide N/A GO:0004298 ... P30656 41033310
    1049092 9qbo:N (2.8) BS01 peptide N/A GO:0004175 ... P38624 41033310
    1049093 9qbo:N (2.8) BS02 MG N/A GO:0004175 ... P38624 41033310
    1049094 9qbo:V (2.8) BS01 peptide N/A GO:0004298 ... P25043 41033310
    1049095 9qbo:Y (2.8) BS01 peptide N/A GO:0004298 ... P30656 41033310
    1049096 9qbo:b (2.8) BS01 peptide N/A GO:0004175 ... P38624 41033310
    1049097 9qbr:A (2.4) BS01 LYS N/A GO:0000049 ... P9WFU9 40749104
    1049098 9qbr:A (2.4) BS02 A1I5H N/A GO:0000049 ... P9WFU9 40749104
    1049099 9qbs:A (1.95) BS01 peptide N/A N/A Q14145 N/A
    1049100 9qbs:B (1.95) BS01 peptide N/A N/A Q14145 N/A
    1049101 9qbt:A (2.334) BS01 peptide N/A N/A Q14145 N/A
    1049102 9qbu:A (2.1) BS01 A1I5L N/A N/A Q14191 N/A
    1049103 9qbu:A (2.1) BS02 ZN N/A N/A Q14191 N/A
    1049104 9qbu:B (2.1) BS01 A1I5L N/A N/A Q14191 N/A
    1049105 9qbu:B (2.1) BS02 ZN N/A N/A Q14191 N/A
    1049106 9qbv:A (2.15) BS01 A1I5F N/A N/A Q14191 N/A
    1049107 9qbv:A (2.15) BS02 ZN N/A N/A Q14191 N/A
    1049108 9qbw:G (2.9) BS01 MG N/A GO:0003674 ... P21243 41033310
    1049109 9qbw:H (2.9) BS01 peptide N/A GO:0004298 ... P25043 41033310
    1049110 9qbw:H (2.9) BS02 peptide N/A GO:0004298 ... P25043 41033310
    1049111 9qbw:I (2.9) BS01 peptide N/A GO:0005515 ... P25451 41033310
    1049112 9qbw:K (2.9) BS01 peptide N/A GO:0004298 ... P30656 41033310
    1049113 9qbw:L (2.9) BS01 peptide N/A GO:0003674 ... P23724 41033310
    1049114 9qbw:N (2.9) BS01 peptide N/A GO:0004175 ... P38624 41033310
    1049115 9qbw:V (2.9) BS01 peptide N/A GO:0004298 ... P25043 41033310
    1049116 9qbw:V (2.9) BS02 peptide N/A GO:0004298 ... P25043 41033310
    1049117 9qbw:W (2.9) BS01 MG N/A GO:0005515 ... P25451 41033310
    1049118 9qbw:Y (2.9) BS01 peptide N/A GO:0004298 ... P30656 41033310
    1049119 9qbw:Z (2.9) BS01 peptide N/A GO:0003674 ... P23724 41033310
    1049120 9qbw:b (2.9) BS01 peptide N/A GO:0004175 ... P38624 41033310
    1049121 9qby:G (2.9) BS01 MG N/A GO:0003674 ... P21243 41033310
    1049122 9qby:H (2.9) BS01 peptide N/A GO:0004298 ... P25043 41033310
    1049123 9qby:K (2.9) BS01 peptide N/A GO:0004298 ... P30656 41033310
    1049124 9qby:N (2.9) BS01 peptide N/A GO:0004175 ... P38624 41033310
    1049125 9qby:N (2.9) BS02 MG N/A GO:0004175 ... P38624 41033310
    1049126 9qby:V (2.9) BS01 peptide N/A GO:0004298 ... P25043 41033310
    1049127 9qby:Y (2.9) BS01 peptide N/A GO:0004298 ... P30656 41033310
    1049128 9qby:b (2.9) BS01 peptide N/A GO:0004175 ... P38624 41033310
    1049129 9qc1:A (3.124) BS01 A1I5G N/A N/A P20789 N/A
    1049130 9qc1:A (3.124) BS02 A1I5G N/A N/A P20789 N/A
    1049131 9qc2:A (1.24) BS01 MG N/A N/A N/A 40796981
    1049132 9qc2:A (1.24) BS02 MG N/A N/A N/A 40796981
    1049133 9qc2:A (1.24) BS03 MG N/A N/A N/A 40796981
    1049134 9qc2:A (1.24) BS04 MG N/A N/A N/A 40796981
    1049135 9qc2:A (1.24) BS05 MG N/A N/A N/A 40796981
    1049136 9qc2:B (1.24) BS01 MG N/A N/A N/A 40796981
    1049137 9qc2:B (1.24) BS02 MG N/A N/A N/A 40796981
    1049138 9qc2:B (1.24) BS03 MG N/A N/A N/A 40796981
    1049139 9qc2:B (1.24) BS04 MG N/A N/A N/A 40796981
    1049140 9qc2:B (1.24) BS05 MG N/A N/A N/A 40796981
    1049141 9qc2:B (1.24) BS06 MG N/A N/A N/A 40796981
    1049142 9qc2:B (1.24) BS07 MG N/A N/A N/A 40796981
    1049143 9qc2:C (1.24) BS01 MG N/A N/A N/A 40796981
    1049144 9qc2:C (1.24) BS02 MG N/A N/A N/A 40796981
    1049145 9qc2:C (1.24) BS03 MG N/A N/A N/A 40796981
    1049146 9qc2:C (1.24) BS04 MG N/A N/A N/A 40796981
    1049147 9qc2:C (1.24) BS05 MG N/A N/A N/A 40796981
    1049148 9qc2:C (1.24) BS06 MG N/A N/A N/A 40796981
    1049149 9qc2:C (1.24) BS07 MG N/A N/A N/A 40796981
    1049150 9qc2:D (1.24) BS01 MG N/A N/A N/A 40796981
    1049151 9qc2:D (1.24) BS02 MG N/A N/A N/A 40796981
    1049152 9qc2:D (1.24) BS03 MG N/A N/A N/A 40796981
    1049153 9qc2:D (1.24) BS04 MG N/A N/A N/A 40796981
    1049154 9qc3:A (2.28) BS01 LYS N/A GO:0000049 ... P9WFU9 40749104
    1049155 9qc3:A (2.28) BS02 A1I50 N/A GO:0000049 ... P9WFU9 40749104
    1049156 9qc4:A (2.601) BS01 LYS N/A GO:0000049 ... P9WFU9 40749104
    1049157 9qc4:A (2.601) BS02 A1I5Z N/A GO:0000049 ... P9WFU9 40749104
    1049158 9qc9:G (2.6) BS01 MG N/A GO:0003674 ... P21243 41033310
    1049159 9qc9:N (2.6) BS01 MG N/A GO:0004175 ... P38624 41033310
    1049160 9qc9:V (2.6) BS01 MG N/A GO:0004298 ... P25043 41033310
    1049161 9qc9:W (2.6) BS01 MG N/A GO:0005515 ... P25451 41033310
    1049162 9qc9:Z (2.6) BS01 MG N/A GO:0003674 ... P23724 41033310
    1049163 9qca:A (1.73) BS01 A1IZ2 N/A N/A Q3UKX1 N/A
    1049164 9qcc:A (3.0) BS01 dna N/A N/A A7ICE8 41298897
    1049165 9qcc:A (3.0) BS02 rna N/A N/A A7ICE8 41298897
    1049166 9qcc:A (3.0) BS03 dna N/A N/A A7ICE8 41298897
    1049167 9qcc:A (3.0) BS04 dna N/A N/A A7ICE8 41298897
    1049168 9qcc:A (3.0) BS05 CA N/A N/A A7ICE8 41298897
    1049169 9qcc:A (3.0) BS06 CA N/A N/A A7ICE8 41298897
    1049170 9qcc:B (3.0) BS01 dna N/A N/A A7ICE9 41298897
    1049171 9qcc:B (3.0) BS02 rna N/A N/A A7ICE9 41298897
    1049172 9qcc:B (3.0) BS03 CA N/A N/A A7ICE9 41298897
    1049173 9qcc:E (3.0) BS01 dna N/A N/A A7ICE8 41298897
    1049174 9qcc:E (3.0) BS02 rna N/A N/A A7ICE8 41298897
    1049175 9qcc:F (3.0) BS01 dna N/A N/A A7ICE9 41298897
    1049176 9qcc:F (3.0) BS02 rna N/A N/A A7ICE9 41298897
    1049177 9qcc:F (3.0) BS03 CA N/A N/A A7ICE9 41298897
    1049178 9qcc:I (3.0) BS01 dna N/A N/A A7ICE8 41298897
    1049179 9qcc:I (3.0) BS02 rna N/A N/A A7ICE8 41298897
    1049180 9qcc:J (3.0) BS01 dna N/A N/A A7ICE9 41298897
    1049181 9qcc:J (3.0) BS02 rna N/A N/A A7ICE9 41298897
    1049182 9qcc:J (3.0) BS03 CA N/A N/A A7ICE9 41298897
    1049183 9qcc:M (3.0) BS01 dna N/A N/A A7ICE8 41298897
    1049184 9qcc:M (3.0) BS02 rna N/A N/A A7ICE8 41298897
    1049185 9qcc:N (3.0) BS01 dna N/A N/A A7ICE9 41298897
    1049186 9qcc:N (3.0) BS02 rna N/A N/A A7ICE9 41298897
    1049187 9qcc:N (3.0) BS03 CA N/A N/A A7ICE9 41298897
    1049188 9qcc:Q (3.0) BS01 dna N/A N/A A7ICE8 41298897
    1049189 9qcc:Q (3.0) BS02 rna N/A N/A A7ICE8 41298897
    1049190 9qcc:Q (3.0) BS03 dna N/A N/A A7ICE8 41298897
    1049191 9qcc:Q (3.0) BS04 dna N/A N/A A7ICE8 41298897
    1049192 9qcc:Q (3.0) BS05 CA N/A N/A A7ICE8 41298897
    1049193 9qcc:Q (3.0) BS06 CA N/A N/A A7ICE8 41298897
    1049194 9qcc:R (3.0) BS01 dna N/A N/A A7ICE9 41298897
    1049195 9qcc:R (3.0) BS02 rna N/A N/A A7ICE9 41298897
    1049196 9qcc:R (3.0) BS03 CA N/A N/A A7ICE9 41298897
    1049197 9qcc:U (3.0) BS01 dna N/A N/A A7ICE8 41298897
    1049198 9qcc:U (3.0) BS02 rna N/A N/A A7ICE8 41298897
    1049199 9qcc:V (3.0) BS01 dna N/A N/A A7ICE9 41298897
    1049200 9qcc:V (3.0) BS02 rna N/A N/A A7ICE9 41298897

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).