SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1050001 9qf6:BV (2.67) BS01 rna N/A GO:0003735 ... Q8U158 41130207
    1050002 9qf6:BV (2.67) BS02 rna N/A GO:0003735 ... Q8U158 41130207
    1050003 9qf6:BV (2.67) BS03 ZN N/A GO:0003735 ... Q8U158 41130207
    1050004 9qf6:BW (2.67) BS01 rna N/A GO:0003735 ... Q8U005 41130207
    1050005 9qf6:BX (2.67) BS01 rna N/A GO:0000463 ... Q9HH78 41130207
    1050006 9qf6:BX (2.67) BS02 rna N/A GO:0000463 ... Q9HH78 41130207
    1050007 9qf6:BY (2.67) BS01 rna N/A GO:0003723 ... Q8U0M6 41130207
    1050008 9qf6:BZ (2.67) BS01 rna N/A GO:0002181 ... Q8U3S7 41130207
    1050009 9qf6:Ba (2.67) BS01 rna N/A GO:0003735 ... Q9HH82 41130207
    1050010 9qf6:Bb (2.67) BS01 rna N/A GO:0003735 ... Q8U2L3 41130207
    1050011 9qf6:Bb (2.67) BS02 ZN N/A GO:0003735 ... Q8U2L3 41130207
    1050012 9qf6:Bc (2.67) BS01 rna N/A GO:0003735 ... Q8TZV6 41130207
    1050013 9qf6:Bd (2.67) BS01 rna N/A GO:0003723 ... Q8U0P5 41130207
    1050014 9qf6:Bd (2.67) BS02 ZN N/A GO:0003723 ... Q8U0P5 41130207
    1050015 9qf6:Be (2.67) BS01 rna N/A GO:0003735 ... Q8TZI4 41130207
    1050016 9qf6:Be (2.67) BS02 ZN N/A GO:0003735 ... Q8TZI4 41130207
    1050017 9qf6:Bf (2.67) BS01 rna N/A GO:0003735 ... Q8U3S6 41130207
    1050018 9qf6:Bg (2.67) BS01 rna N/A GO:0003735 ... Q8U0V6 41130207
    1050019 9qf6:Bg (2.67) BS02 ZN N/A GO:0003735 ... Q8U0V6 41130207
    1050020 9qf6:Bh (2.67) BS01 rna N/A N/A Q8U232 41130207
    1050021 9qf6:Bi (2.67) BS01 rna N/A GO:0003735 ... Q8U475 41130207
    1050022 9qf6:Bi (2.67) BS02 ZN N/A GO:0003735 ... Q8U475 41130207
    1050023 9qf6:Bj (2.67) BS01 rna N/A GO:0003735 ... Q8U3S9 41130207
    1050024 9qf6:Bk (2.67) BS01 rna N/A N/A Q8U2K5 41130207
    1050025 9qf6:Bk (2.67) BS02 ZN N/A N/A Q8U2K5 41130207
    1050026 9qf6:Bl (2.67) BS01 rna N/A GO:0003735 ... Q8U442 41130207
    1050027 9qf7:A (2.27) BS01 A1IZI N/A N/A Q3UKX1 N/A
    1050028 9qfb:A (2.74) BS01 ADP N/A GO:0000776 ... P60709 41075793
    1050029 9qfb:B (2.74) BS01 ADP N/A GO:0000776 ... P60709 41075793
    1050030 9qfb:C (2.74) BS01 ADP N/A GO:0000776 ... P60709 41075793
    1050031 9qfb:D (2.74) BS01 ADP N/A GO:0000776 ... P60709 41075793
    1050032 9qfb:E (2.74) BS01 ADP N/A GO:0000776 ... P60709 41075793
    1050033 9qfb:F (2.74) BS01 ADP N/A GO:0000776 ... P60709 41075793
    1050034 9qfb:G (2.74) BS01 ADP N/A GO:0000776 ... P60709 41075793
    1050035 9qfc:A (2.55) BS01 A1I5S N/A N/A Q9H2K2 N/A
    1050036 9qfc:A (2.55) BS02 A1I6W N/A N/A Q9H2K2 N/A
    1050037 9qfc:B (2.55) BS01 A1I5S N/A N/A Q9H2K2 N/A
    1050038 9qfc:B (2.55) BS02 A1I6W N/A N/A Q9H2K2 N/A
    1050039 9qfd:A (2.61) BS01 ADP N/A GO:0000776 ... P60709 41075793
    1050040 9qfd:B (2.61) BS01 ADP N/A GO:0000776 ... P60709 41075793
    1050041 9qfd:C (2.61) BS01 ADP N/A GO:0000776 ... P60709 41075793
    1050042 9qfd:D (2.61) BS01 ADP N/A GO:0000776 ... P60709 41075793
    1050043 9qfd:E (2.61) BS01 ADP N/A GO:0000776 ... P60709 41075793
    1050044 9qfd:F (2.61) BS01 ADP N/A GO:0000776 ... P60709 41075793
    1050045 9qfd:G (2.61) BS01 ADP N/A GO:0000776 ... P60709 41075793
    1050046 9qfe:A (3.12) BS01 ADP N/A GO:0000776 ... P60709 41075793
    1050047 9qfe:B (3.12) BS01 ADP N/A GO:0000776 ... P60709 41075793
    1050048 9qfe:C (3.12) BS01 ADP N/A GO:0000776 ... P60709 41075793
    1050049 9qfe:D (3.12) BS01 ADP N/A GO:0000776 ... P60709 41075793
    1050050 9qfe:E (3.12) BS01 ADP N/A GO:0000776 ... P60709 41075793
    1050051 9qfe:F (3.12) BS01 ADP N/A GO:0000776 ... P60709 41075793
    1050052 9qfe:G (3.12) BS01 ADP N/A GO:0000776 ... P60709 41075793
    1050053 9qff:A (1.879) BS01 A1I6H N/A GO:0005085 ... Q07889 41089494
    1050054 9qfg:A (3.49) BS01 ADP N/A GO:0000776 ... P60709 41075793
    1050055 9qfg:B (3.49) BS01 ADP N/A GO:0000776 ... P60709 41075793
    1050056 9qfg:C (3.49) BS01 ADP N/A GO:0000776 ... P60709 41075793
    1050057 9qfg:D (3.49) BS01 ADP N/A GO:0000776 ... P60709 41075793
    1050058 9qfg:E (3.49) BS01 ADP N/A GO:0000776 ... P60709 41075793
    1050059 9qfg:F (3.49) BS01 ADP N/A GO:0000776 ... P60709 41075793
    1050060 9qfg:G (3.49) BS01 ADP N/A GO:0000776 ... P60709 41075793
    1050061 9qfi:A (1.91) BS01 A1I5V N/A N/A Q9Y5A9 40860041
    1050062 9qfj:A (2.31) BS01 ADP N/A GO:0000776 ... P60709 41075793
    1050063 9qfj:B (2.31) BS01 ADP N/A GO:0000776 ... P60709 41075793
    1050064 9qfj:C (2.31) BS01 ADP N/A GO:0000776 ... P60709 41075793
    1050065 9qfj:D (2.31) BS01 ADP N/A GO:0000776 ... P60709 41075793
    1050066 9qfj:E (2.31) BS01 ADP N/A GO:0000776 ... P60709 41075793
    1050067 9qfk:A (3.99) BS01 ADP N/A GO:0000776 ... P60709 41075793
    1050068 9qfk:B (3.99) BS01 ADP N/A GO:0000776 ... P60709 41075793
    1050069 9qfk:C (3.99) BS01 ADP N/A GO:0000776 ... P60709 41075793
    1050070 9qfk:D (3.99) BS01 ADP N/A GO:0000776 ... P60709 41075793
    1050071 9qfk:E (3.99) BS01 ADP N/A GO:0000776 ... P60709 41075793
    1050072 9qfk:F (3.99) BS01 ADP N/A GO:0000776 ... P60709 41075793
    1050073 9qfk:G (3.99) BS01 ADP N/A GO:0000776 ... P60709 41075793
    1050074 9qfl:A (1.7) BS01 A1I5U N/A GO:0003723 ... Q9Y5A9 40860041
    1050075 9qfn:A (2.25) BS01 GTP N/A N/A P81947 N/A
    1050076 9qfn:A (2.25) BS02 CA N/A N/A P81947 N/A
    1050077 9qfn:A (2.25) BS03 A1I6L N/A N/A P81947 N/A
    1050078 9qfn:B (2.25) BS01 GDP N/A N/A Q6B856 N/A
    1050079 9qfn:B (2.25) BS02 A1I6L N/A N/A Q6B856 N/A
    1050080 9qfn:C (2.25) BS01 GTP N/A N/A P81947 N/A
    1050081 9qfn:C (2.25) BS02 CA N/A N/A P81947 N/A
    1050082 9qfn:D (2.25) BS01 GDP N/A N/A Q6B856 N/A
    1050083 9qfn:F (2.25) BS01 ACP N/A N/A A0A8V0Z8P0 N/A
    1050084 9qfo:A (2.96) BS01 ADP N/A GO:0000776 ... P60709 41075793
    1050085 9qfo:B (2.96) BS01 ADP N/A GO:0000776 ... P60709 41075793
    1050086 9qfo:C (2.96) BS01 ADP N/A GO:0000776 ... P60709 41075793
    1050087 9qfo:D (2.96) BS01 ADP N/A GO:0000776 ... P60709 41075793
    1050088 9qfo:E (2.96) BS01 ADP N/A GO:0000776 ... P60709 41075793
    1050089 9qfo:F (2.96) BS01 ADP N/A GO:0000776 ... P60709 41075793
    1050090 9qfq:A (2.76) BS01 ADP N/A GO:0000776 ... P60709 41075793
    1050091 9qfq:B (2.76) BS01 ADP N/A GO:0000776 ... P60709 41075793
    1050092 9qfq:C (2.76) BS01 ADP N/A GO:0000776 ... P60709 41075793
    1050093 9qfq:D (2.76) BS01 ADP N/A GO:0000776 ... P60709 41075793
    1050094 9qfq:E (2.76) BS01 ADP N/A GO:0000776 ... P60709 41075793
    1050095 9qfr:A (1.52) BS01 BB2 N/A GO:0006412 ... Q9KVU3 41316864
    1050096 9qfr:B (1.52) BS01 BB2 N/A GO:0006412 ... Q9KVU3 41316864
    1050097 9qfs:A (1.329) BS01 A1I6J N/A N/A Q9UNE7 40832528
    1050098 9qft:D (1.82) BS01 BB2 N/A GO:0006412 ... Q9KN16 41316864
    1050099 9qft:G (1.82) BS01 BB2 N/A GO:0006412 ... Q9KN16 41316864
    1050100 9qfu:A (1.983) BS01 A1I52 N/A GO:0004252 ... P20231 40142113
    1050101 9qfu:B (1.983) BS01 A1I52 N/A GO:0004252 ... P20231 40142113
    1050102 9qfu:C (1.983) BS01 A1I52 N/A GO:0004252 ... P20231 40142113
    1050103 9qfu:D (1.983) BS01 A1I52 N/A GO:0004252 ... P20231 40142113
    1050104 9qfw:A (3.16) BS01 ADP N/A GO:0000776 ... P60709 41075793
    1050105 9qfw:B (3.16) BS01 ADP N/A GO:0000776 ... P60709 41075793
    1050106 9qfw:C (3.16) BS01 ADP N/A GO:0000776 ... P60709 41075793
    1050107 9qfw:D (3.16) BS01 ADP N/A GO:0000776 ... P60709 41075793
    1050108 9qfw:E (3.16) BS01 ADP N/A GO:0000776 ... P60709 41075793
    1050109 9qfx:A (3.45) BS01 AV0 N/A N/A N/A 41839883
    1050110 9qfx:A (3.45) BS02 AV0 N/A N/A N/A 41839883
    1050111 9qfx:B (3.45) BS01 AV0 N/A N/A N/A 41839883
    1050112 9qfx:B (3.45) BS02 AV0 N/A N/A N/A 41839883
    1050113 9qfy:A (1.064) BS01 A1I6I N/A N/A Q9UNE7 40832528
    1050114 9qfz:A (2.1) BS01 A1I6M N/A N/A P37231 N/A
    1050115 9qfz:B (2.1) BS01 A1I6M N/A N/A P37231 N/A
    1050116 9qg0:A (2.1) BS01 A1I6U N/A N/A P37231 N/A
    1050117 9qg0:B (2.1) BS01 A1I6U N/A N/A P37231 N/A
    1050118 9qg1:A (3.3) BS01 FE N/A GO:0005506 ... E7FHI1 N/A
    1050119 9qg1:A (3.3) BS02 FE N/A GO:0005506 ... E7FHI1 N/A
    1050120 9qg1:A (3.3) BS03 FE N/A GO:0005506 ... E7FHI1 N/A
    1050121 9qg1:A (3.3) BS04 FE N/A GO:0005506 ... E7FHI1 N/A
    1050122 9qg1:B (3.3) BS01 FE N/A GO:0005506 ... E7FHI1 N/A
    1050123 9qg1:B (3.3) BS02 FE N/A GO:0005506 ... E7FHI1 N/A
    1050124 9qg1:B (3.3) BS03 FE N/A GO:0005506 ... E7FHI1 N/A
    1050125 9qg1:C (3.3) BS01 FE N/A GO:0005506 ... E7FHI1 N/A
    1050126 9qg1:C (3.3) BS02 FE N/A GO:0005506 ... E7FHI1 N/A
    1050127 9qg1:C (3.3) BS03 FE N/A GO:0005506 ... E7FHI1 N/A
    1050128 9qg1:D (3.3) BS01 FE N/A GO:0005506 ... E7FHI1 N/A
    1050129 9qg1:D (3.3) BS02 FE N/A GO:0005506 ... E7FHI1 N/A
    1050130 9qg1:D (3.3) BS03 FE N/A GO:0005506 ... E7FHI1 N/A
    1050131 9qg1:D (3.3) BS04 FE N/A GO:0005506 ... E7FHI1 N/A
    1050132 9qg1:E (3.3) BS01 FE N/A GO:0005506 ... E7FHI1 N/A
    1050133 9qg1:E (3.3) BS02 FE N/A GO:0005506 ... E7FHI1 N/A
    1050134 9qg1:E (3.3) BS03 FE N/A GO:0005506 ... E7FHI1 N/A
    1050135 9qg1:E (3.3) BS04 FE N/A GO:0005506 ... E7FHI1 N/A
    1050136 9qg1:F (3.3) BS01 FE N/A GO:0005506 ... E7FHI1 N/A
    1050137 9qg1:F (3.3) BS02 FE N/A GO:0005506 ... E7FHI1 N/A
    1050138 9qg1:F (3.3) BS03 FE N/A GO:0005506 ... E7FHI1 N/A
    1050139 9qg1:G (3.3) BS01 FE N/A GO:0005506 ... E7FHI1 N/A
    1050140 9qg1:G (3.3) BS02 FE N/A GO:0005506 ... E7FHI1 N/A
    1050141 9qg1:G (3.3) BS03 FE N/A GO:0005506 ... E7FHI1 N/A
    1050142 9qg1:G (3.3) BS04 FE N/A GO:0005506 ... E7FHI1 N/A
    1050143 9qg1:H (3.3) BS01 FE N/A GO:0005506 ... E7FHI1 N/A
    1050144 9qg1:H (3.3) BS02 FE N/A GO:0005506 ... E7FHI1 N/A
    1050145 9qg1:H (3.3) BS03 FE N/A GO:0005506 ... E7FHI1 N/A
    1050146 9qg1:H (3.3) BS04 FE N/A GO:0005506 ... E7FHI1 N/A
    1050147 9qg1:I (3.3) BS01 FE N/A GO:0005506 ... E7FHI1 N/A
    1050148 9qg1:I (3.3) BS02 FE N/A GO:0005506 ... E7FHI1 N/A
    1050149 9qg1:J (3.3) BS01 FE N/A GO:0005506 ... E7FHI1 N/A
    1050150 9qg1:J (3.3) BS02 FE N/A GO:0005506 ... E7FHI1 N/A
    1050151 9qg1:J (3.3) BS03 FE N/A GO:0005506 ... E7FHI1 N/A
    1050152 9qg1:J (3.3) BS04 FE N/A GO:0005506 ... E7FHI1 N/A
    1050153 9qg1:K (3.3) BS01 FE N/A GO:0005506 ... E7FHI1 N/A
    1050154 9qg1:K (3.3) BS02 FE N/A GO:0005506 ... E7FHI1 N/A
    1050155 9qg1:K (3.3) BS03 FE N/A GO:0005506 ... E7FHI1 N/A
    1050156 9qg1:K (3.3) BS04 FE N/A GO:0005506 ... E7FHI1 N/A
    1050157 9qg1:L (3.3) BS01 FE N/A GO:0005506 ... E7FHI1 N/A
    1050158 9qg1:L (3.3) BS02 FE N/A GO:0005506 ... E7FHI1 N/A
    1050159 9qg1:L (3.3) BS03 FE N/A GO:0005506 ... E7FHI1 N/A
    1050160 9qg1:M (3.3) BS01 FE N/A GO:0005506 ... E7FHI1 N/A
    1050161 9qg1:M (3.3) BS02 FE N/A GO:0005506 ... E7FHI1 N/A
    1050162 9qg1:M (3.3) BS03 FE N/A GO:0005506 ... E7FHI1 N/A
    1050163 9qg1:M (3.3) BS04 FE N/A GO:0005506 ... E7FHI1 N/A
    1050164 9qg1:N (3.3) BS01 FE N/A GO:0005506 ... E7FHI1 N/A
    1050165 9qg1:N (3.3) BS02 FE N/A GO:0005506 ... E7FHI1 N/A
    1050166 9qg1:N (3.3) BS03 FE N/A GO:0005506 ... E7FHI1 N/A
    1050167 9qg1:N (3.3) BS04 FE N/A GO:0005506 ... E7FHI1 N/A
    1050168 9qg1:O (3.3) BS01 FE N/A GO:0005506 ... E7FHI1 N/A
    1050169 9qg1:O (3.3) BS02 FE N/A GO:0005506 ... E7FHI1 N/A
    1050170 9qg1:O (3.3) BS03 FE N/A GO:0005506 ... E7FHI1 N/A
    1050171 9qg1:P (3.3) BS01 FE N/A GO:0005506 ... E7FHI1 N/A
    1050172 9qg1:P (3.3) BS02 FE N/A GO:0005506 ... E7FHI1 N/A
    1050173 9qg1:P (3.3) BS03 FE N/A GO:0005506 ... E7FHI1 N/A
    1050174 9qg1:P (3.3) BS04 FE N/A GO:0005506 ... E7FHI1 N/A
    1050175 9qg1:P (3.3) BS05 FE N/A GO:0005506 ... E7FHI1 N/A
    1050176 9qg2:A (2.0) BS01 A1I6S N/A N/A P37231 N/A
    1050177 9qg2:B (2.0) BS01 A1I6S N/A N/A P37231 N/A
    1050178 9qg3:B (2.3) BS01 A1I6T N/A N/A P37231 N/A
    1050179 9qg4:A (1.9) BS01 A1I6O N/A N/A P37231 N/A
    1050180 9qg4:B (1.9) BS01 A1I6O N/A N/A P37231 N/A
    1050181 9qg5:B (2.3) BS01 A1I6P N/A N/A P37231 N/A
    1050182 9qg6:B (2.7) BS01 A1I6N N/A N/A P37231 N/A
    1050183 9qg8:A (2.15) BS01 peptide N/A N/A O98187 40643222
    1050184 9qga:A (2.21) BS01 HEM N/A GO:0004601 ... P05164 41043752
    1050185 9qga:B (2.21) BS01 MAN N/A GO:0004601 ... P05164 41043752
    1050186 9qga:B (2.21) BS02 HEM N/A GO:0004601 ... P05164 41043752
    1050187 9qga:B (2.21) BS03 CA N/A GO:0004601 ... P05164 41043752
    1050188 9qga:C (2.21) BS01 HEM N/A GO:0004601 ... P05164 41043752
    1050189 9qga:D (2.21) BS01 MAN N/A GO:0004601 ... P05164 41043752
    1050190 9qga:D (2.21) BS02 HEM N/A GO:0004601 ... P05164 41043752
    1050191 9qga:D (2.21) BS03 CA N/A GO:0004601 ... P05164 41043752
    1050192 9qgb:A (1.27) BS01 FMN N/A GO:0005829 ... A0ACD6B956 40305164
    1050193 9qgb:B (1.27) BS01 FMN N/A GO:0005829 ... A0ACD6B956 40305164
    1050194 9qgc:D (1.239) BS01 FMN N/A GO:0005829 ... A0ACD6B956 40305164
    1050195 9qgd:D (1.239) BS01 FMN N/A GO:0005829 ... A0ACD6B956 40305164
    1050196 9qge:A (1.433) BS01 FMN N/A GO:0005829 ... A0ACD6B956 40305164
    1050197 9qge:B (1.433) BS01 FMN N/A GO:0005829 ... A0ACD6B956 40305164
    1050198 9qgf:A (1.444) BS01 FMN N/A GO:0005829 ... A0ACD6B956 40305164
    1050199 9qgf:A (1.444) BS02 A1I6V N/A GO:0005829 ... A0ACD6B956 40305164
    1050200 9qgf:B (1.444) BS01 FMN N/A GO:0005829 ... A0ACD6B956 40305164

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).