SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1050401 9qhw:D (3.3) BS01 ATP N/A N/A N/A 41839883
    1050402 9qhw:D (3.3) BS02 MG N/A N/A N/A 41839883
    1050403 9qhw:D (3.3) BS03 ATP N/A N/A N/A 41839883
    1050404 9qhx:C (3.47) BS01 ATP N/A N/A N/A 41839883
    1050405 9qhx:C (3.47) BS02 ATP N/A N/A N/A 41839883
    1050406 9qhx:D (3.47) BS01 ATP N/A N/A N/A 41839883
    1050407 9qhx:D (3.47) BS02 ATP N/A N/A N/A 41839883
    1050408 9qi3:B (1.3) BS01 ZN N/A GO:0005576 ... P0A5I7 41074856
    1050409 9qi5:B (1.8) BS01 ZN N/A GO:0005576 ... P9WKD3 40484381
    1050410 9qi6:A (1.8) BS01 ZN N/A GO:0005576 ... P9WKD3 40484381
    1050411 9qi6:A (1.8) BS02 ZN N/A GO:0005576 ... P9WKD3 40484381
    1050412 9qi6:A (1.8) BS03 ISS N/A GO:0005576 ... P9WKD3 40484381
    1050413 9qi6:B (1.8) BS01 ZN N/A GO:0005576 ... P9WKD3 40484381
    1050414 9qi6:B (1.8) BS02 ZN N/A GO:0005576 ... P9WKD3 40484381
    1050415 9qi6:B (1.8) BS03 ISS N/A GO:0005576 ... P9WKD3 40484381
    1050416 9qi7:A (2.2) BS01 NXL N/A GO:0005576 ... P9WKD3 40484381
    1050417 9qia:B (4.38) BS01 IHP N/A GO:0004839 ... A0AVT1 41350950
    1050418 9qia:B (4.38) BS02 AMP N/A GO:0004839 ... A0AVT1 41350950
    1050419 9qic:B (3.29) BS01 IHP N/A GO:0004839 ... A0AVT1 41350950
    1050420 9qic:B (3.29) BS02 ATP N/A GO:0004839 ... A0AVT1 41350950
    1050421 9qig:B (3.94) BS01 IHP N/A GO:0004839 ... A0AVT1 41350950
    1050422 9qig:B (3.94) BS02 ATP N/A GO:0004839 ... A0AVT1 41350950
    1050423 9qih:A (2.6) BS01 ADP N/A N/A N/A N/A
    1050424 9qih:B (2.6) BS01 ADP N/A N/A N/A N/A
    1050425 9qii:B (3.99) BS01 IHP N/A GO:0004839 ... A0AVT1 41350950
    1050426 9qii:B (3.99) BS02 ATP N/A GO:0004839 ... A0AVT1 41350950
    1050427 9qik:A (3.03) BS01 dna N/A GO:0000786 ... P06897 41290000
    1050428 9qik:A (3.03) BS02 dna N/A GO:0000786 ... P06897 41290000
    1050429 9qik:B (3.03) BS01 dna N/A GO:0000786 ... P06897 41290000
    1050430 9qik:B (3.03) BS02 dna N/A GO:0000786 ... P06897 41290000
    1050431 9qik:C (3.03) BS01 dna N/A GO:0000786 ... P02281 41290000
    1050432 9qik:C (3.03) BS02 dna N/A GO:0000786 ... P02281 41290000
    1050433 9qik:D (3.03) BS01 dna N/A GO:0000786 ... P02281 41290000
    1050434 9qik:D (3.03) BS02 dna N/A GO:0000786 ... P02281 41290000
    1050435 9qik:E (3.03) BS01 dna N/A GO:0005634 ... A0A8T2P505 41290000
    1050436 9qik:E (3.03) BS02 dna N/A GO:0005634 ... A0A8T2P505 41290000
    1050437 9qik:F (3.03) BS01 dna N/A GO:0005634 ... A0A8T2P505 41290000
    1050438 9qik:F (3.03) BS02 dna N/A GO:0005634 ... A0A8T2P505 41290000
    1050439 9qik:G (3.03) BS01 dna N/A N/A A0A8J1LTD2 41290000
    1050440 9qik:G (3.03) BS02 dna N/A N/A A0A8J1LTD2 41290000
    1050441 9qik:H (3.03) BS01 dna N/A N/A A0A8J1LTD2 41290000
    1050442 9qik:H (3.03) BS02 dna N/A N/A A0A8J1LTD2 41290000
    1050443 9qim:B (3.57) BS01 IHP N/A GO:0004839 ... A0AVT1 41350950
    1050444 9qim:B (3.57) BS02 ATP N/A GO:0004839 ... A0AVT1 41350950
    1050445 9qio:B (4.22) BS01 IHP N/A GO:0004839 ... A0AVT1 41350950
    1050446 9qio:B (4.22) BS02 ATP N/A GO:0004839 ... A0AVT1 41350950
    1050447 9qip:B (4.15) BS01 IHP N/A GO:0004839 ... A0AVT1 41350950
    1050448 9qip:B (4.15) BS02 ATP N/A GO:0004839 ... A0AVT1 41350950
    1050449 9qit:A (3.04) BS01 FAD N/A N/A A0A975LBX7 41231970
    1050450 9qit:A (3.04) BS02 FE N/A N/A A0A975LBX7 41231970
    1050451 9qit:B (3.04) BS01 FAD N/A N/A A0A975LBX7 41231970
    1050452 9qit:C (3.04) BS01 FAD N/A N/A A0A975LBX7 41231970
    1050453 9qit:D (3.04) BS01 FAD N/A N/A A0A975LBX7 41231970
    1050454 9qit:E (3.04) BS01 FAD N/A N/A A0A975LBX7 41231970
    1050455 9qit:E (3.04) BS02 FE N/A N/A A0A975LBX7 41231970
    1050456 9qit:F (3.04) BS01 FAD N/A N/A A0A975LBX7 41231970
    1050457 9qit:F (3.04) BS02 FE N/A N/A A0A975LBX7 41231970
    1050458 9qit:G (3.04) BS01 FAD N/A N/A A0A975LBX7 41231970
    1050459 9qit:G (3.04) BS02 FE N/A N/A A0A975LBX7 41231970
    1050460 9qit:H (3.04) BS01 FAD N/A N/A A0A975LBX7 41231970
    1050461 9qit:H (3.04) BS02 FE N/A N/A A0A975LBX7 41231970
    1050462 9qiu:A (2.46) BS01 A1IR4 N/A GO:0003723 ... Q9Y5A9 40860041
    1050463 9qiu:B (2.46) BS01 A1IR4 N/A GO:0003723 ... Q9Y5A9 40860041
    1050464 9qiv:B (3.44) BS01 IHP N/A GO:0004839 ... A0AVT1 41350950
    1050465 9qiv:B (3.44) BS02 ATP N/A GO:0004839 ... A0AVT1 41350950
    1050466 9qiw:CA (3.04) BS01 rna N/A GO:0000054 ... P56537 40207627
    1050467 9qiw:CB (3.04) BS01 rna N/A GO:0003723 ... Q13823 40207627
    1050468 9qiw:CB (3.04) BS02 GTP N/A GO:0003723 ... Q13823 40207627
    1050469 9qiw:CC (3.04) BS01 rna N/A GO:0003723 ... Q9BVP2 40207627
    1050470 9qiw:CD (3.04) BS01 rna N/A GO:0001649 ... Q9BZE4 40207627
    1050471 9qiw:CD (3.04) BS02 rna N/A GO:0001649 ... Q9BZE4 40207627
    1050472 9qiw:CD (3.04) BS03 GDP N/A GO:0001649 ... Q9BZE4 40207627
    1050473 9qiw:CD (3.04) BS04 MG N/A GO:0001649 ... Q9BZE4 40207627
    1050474 9qiw:CE (3.04) BS01 rna N/A GO:0003723 ... Q9BRT6 40207627
    1050475 9qiw:CF (3.04) BS01 rna N/A GO:0000027 ... Q9UKD2 40207627
    1050476 9qiw:CH (3.04) BS01 rna N/A GO:0000460 ... O95478 40207627
    1050477 9qiw:CI (3.04) BS01 rna N/A GO:0003735 ... Q9UHA3 40207627
    1050478 9qiw:CI (3.04) BS02 ZN N/A GO:0003735 ... Q9UHA3 40207627
    1050479 9qiw:CJ (3.04) BS01 rna N/A GO:0000027 ... Q9H7B2 40207627
    1050480 9qiw:CJ (3.04) BS02 rna N/A GO:0000027 ... Q9H7B2 40207627
    1050481 9qiw:CK (3.04) BS01 rna N/A GO:0000027 ... Q15050 40207627
    1050482 9qiw:LA (3.04) BS01 rna N/A GO:0002181 ... P62917 40207627
    1050483 9qiw:LB (3.04) BS01 rna N/A GO:0002181 ... P39023 40207627
    1050484 9qiw:LC (3.04) BS01 rna N/A GO:0002181 ... P36578 40207627
    1050485 9qiw:LC (3.04) BS02 rna N/A GO:0002181 ... P36578 40207627
    1050486 9qiw:LD (3.04) BS01 rna N/A GO:0000027 ... P46777 40207627
    1050487 9qiw:LD (3.04) BS02 rna N/A GO:0000027 ... P46777 40207627
    1050488 9qiw:LE (3.04) BS01 rna N/A GO:0002181 ... Q02878 40207627
    1050489 9qiw:LF (3.04) BS01 rna N/A GO:0000463 ... P18124 40207627
    1050490 9qiw:LG (3.04) BS01 rna N/A GO:0000470 ... P62424 40207627
    1050491 9qiw:LG (3.04) BS02 rna N/A GO:0000470 ... P62424 40207627
    1050492 9qiw:LH (3.04) BS01 rna N/A GO:0002181 ... P32969 40207627
    1050493 9qiw:LJ (3.04) BS01 rna N/A GO:0000027 ... P62913 40207627
    1050494 9qiw:LJ (3.04) BS02 rna N/A GO:0000027 ... P62913 40207627
    1050495 9qiw:LL (3.04) BS01 rna N/A GO:0002181 ... P26373 40207627
    1050496 9qiw:LL (3.04) BS02 rna N/A GO:0002181 ... P26373 40207627
    1050497 9qiw:LM (3.04) BS01 rna N/A GO:0002181 ... P50914 40207627
    1050498 9qiw:LN (3.04) BS01 rna N/A GO:0002181 ... P61313 40207627
    1050499 9qiw:LN (3.04) BS02 rna N/A GO:0002181 ... P61313 40207627
    1050500 9qiw:LO (3.04) BS01 rna N/A GO:0002181 ... P40429 40207627
    1050501 9qiw:LP (3.04) BS01 rna N/A GO:0002181 ... P18621 40207627
    1050502 9qiw:LP (3.04) BS02 rna N/A GO:0002181 ... P18621 40207627
    1050503 9qiw:LQ (3.04) BS01 rna N/A GO:0002181 ... Q07020 40207627
    1050504 9qiw:LR (3.04) BS01 rna N/A GO:0002181 ... P84098 40207627
    1050505 9qiw:LS (3.04) BS01 rna N/A GO:0002181 ... Q02543 40207627
    1050506 9qiw:LT (3.04) BS01 rna N/A GO:0001650 ... P46778 40207627
    1050507 9qiw:LU (3.04) BS01 rna N/A GO:0002181 ... P35268 40207627
    1050508 9qiw:LV (3.04) BS01 rna N/A GO:0000122 ... P62829 40207627
    1050509 9qiw:LX (3.04) BS01 rna N/A GO:0002181 ... P62750 40207627
    1050510 9qiw:LX (3.04) BS02 rna N/A GO:0002181 ... P62750 40207627
    1050511 9qiw:LY (3.04) BS01 rna N/A GO:0002181 ... P61254 40207627
    1050512 9qiw:LY (3.04) BS02 rna N/A GO:0002181 ... P61254 40207627
    1050513 9qiw:LZ (3.04) BS01 rna N/A GO:0002181 ... P61353 40207627
    1050514 9qiw:La (3.04) BS01 rna N/A GO:0002181 ... P46776 40207627
    1050515 9qiw:Lc (3.04) BS01 rna N/A GO:0002181 ... P62888 40207627
    1050516 9qiw:Ld (3.04) BS01 rna N/A GO:0002181 ... P62899 40207627
    1050517 9qiw:Le (3.04) BS01 rna N/A GO:0002181 ... P62910 40207627
    1050518 9qiw:Lf (3.04) BS01 rna N/A GO:0002181 ... P18077 40207627
    1050519 9qiw:Lg (3.04) BS01 rna N/A GO:0002181 ... P49207 40207627
    1050520 9qiw:Lg (3.04) BS02 ZN N/A GO:0002181 ... P49207 40207627
    1050521 9qiw:Lh (3.04) BS01 rna N/A GO:0000463 ... P42766 40207627
    1050522 9qiw:Lh (3.04) BS02 rna N/A GO:0000463 ... P42766 40207627
    1050523 9qiw:Li (3.04) BS01 rna N/A GO:0002181 ... Q9Y3U8 40207627
    1050524 9qiw:Lj (3.04) BS01 rna N/A GO:0000448 ... P61927 40207627
    1050525 9qiw:Lj (3.04) BS02 rna N/A GO:0000448 ... P61927 40207627
    1050526 9qiw:Lj (3.04) BS03 ZN N/A GO:0000448 ... P61927 40207627
    1050527 9qiw:Lk (3.04) BS01 rna N/A GO:0002181 ... P63173 40207627
    1050528 9qiw:Ll (3.04) BS01 rna N/A GO:0002181 ... P62891 40207627
    1050529 9qiw:Ll (3.04) BS02 rna N/A GO:0002181 ... P62891 40207627
    1050530 9qiw:Lp (3.04) BS01 rna N/A GO:0002181 ... P61513 40207627
    1050531 9qiw:Lp (3.04) BS02 ZN N/A GO:0002181 ... P61513 40207627
    1050532 9qiw:Lr (3.04) BS01 rna N/A GO:0002181 ... P46779 40207627
    1050533 9qiw:Lt (3.04) BS01 rna N/A GO:0002181 ... P30050 40207627
    1050534 9qj3:A (2.63) BS01 HEM N/A GO:0004601 ... P05164 41043752
    1050535 9qj3:B (2.63) BS01 MAN N/A GO:0004601 ... P05164 41043752
    1050536 9qj3:B (2.63) BS02 CA N/A GO:0004601 ... P05164 41043752
    1050537 9qj3:B (2.63) BS03 HEM N/A GO:0004601 ... P05164 41043752
    1050538 9qj3:C (2.63) BS01 HEM N/A GO:0004601 ... P05164 41043752
    1050539 9qj3:D (2.63) BS01 MAN N/A GO:0004601 ... P05164 41043752
    1050540 9qj3:D (2.63) BS02 HEM N/A GO:0004601 ... P05164 41043752
    1050541 9qj3:D (2.63) BS03 CA N/A GO:0004601 ... P05164 41043752
    1050542 9qj4:D (3.9) BS01 MG N/A N/A P06681 41413058
    1050543 9qj5:D (3.5) BS01 MG N/A N/A P06681 41413058
    1050544 9qj9:A (3.5) BS01 dna N/A N/A P19793 41036627
    1050545 9qj9:A (3.5) BS02 dna N/A N/A P19793 41036627
    1050546 9qj9:A (3.5) BS03 ZN N/A N/A P19793 41036627
    1050547 9qj9:B (3.5) BS01 dna N/A N/A P19793 41036627
    1050548 9qj9:B (3.5) BS02 dna N/A N/A P19793 41036627
    1050549 9qj9:B (3.5) BS03 ZN N/A N/A P19793 41036627
    1050550 9qj9:B (3.5) BS04 ZN N/A N/A P19793 41036627
    1050551 9qjc:5 (3.2) BS01 rna N/A GO:0000027 ... Q12176 41569156
    1050552 9qjc:5 (3.2) BS02 rna N/A GO:0000027 ... Q12176 41569156
    1050553 9qjc:6 (3.2) BS01 rna N/A GO:0003729 ... P39744 41569156
    1050554 9qjc:6 (3.2) BS02 rna N/A GO:0003729 ... P39744 41569156
    1050555 9qjc:C (3.2) BS01 rna N/A GO:0002181 ... P10664 41569156
    1050556 9qjc:D (3.2) BS01 rna N/A GO:0000460 ... P10962 41569156
    1050557 9qjc:E (3.2) BS01 rna N/A GO:0000027 ... Q02326 41569156
    1050558 9qjc:F (3.2) BS01 rna N/A GO:0000463 ... P05737 41569156
    1050559 9qjc:M (3.2) BS01 rna N/A GO:0000027 ... P36105 41569156
    1050560 9qjc:O (3.2) BS01 rna N/A GO:0000470 ... P26784 41569156
    1050561 9qjc:Q (3.2) BS01 rna N/A GO:0002181 ... P0CX49 41569156
    1050562 9qjc:S (3.2) BS01 rna N/A GO:0002181 ... P0CX23 41569156
    1050563 9qjc:e (3.2) BS01 rna N/A GO:0002181 ... P38061 41569156
    1050564 9qjc:f (3.2) BS01 rna N/A GO:0000027 ... P05744 41569156
    1050565 9qje:A (2.26) BS01 A1I71 N/A GO:0004843 ... Q93009 40785232
    1050566 9qje:B (2.26) BS01 A1I71 N/A GO:0004843 ... Q93009 40785232
    1050567 9qjj:B (2.5) BS01 NK3 N/A N/A P24941 N/A
    1050568 9qjn:J (2.4) BS01 NK3 N/A N/A P50613 N/A
    1050569 9qjo:A (2.18) BS01 HEM N/A GO:0004601 ... P05164 41043752
    1050570 9qjo:B (2.18) BS01 FUC N/A GO:0004601 ... P05164 41043752
    1050571 9qjo:B (2.18) BS02 MAN N/A GO:0004601 ... P05164 41043752
    1050572 9qjo:B (2.18) BS03 CA N/A GO:0004601 ... P05164 41043752
    1050573 9qjo:B (2.18) BS04 HEM N/A GO:0004601 ... P05164 41043752
    1050574 9qjo:C (2.18) BS01 HEM N/A GO:0004601 ... P05164 41043752
    1050575 9qjo:D (2.18) BS01 MAN N/A GO:0004601 ... P05164 41043752
    1050576 9qjo:D (2.18) BS02 FUC N/A GO:0004601 ... P05164 41043752
    1050577 9qjo:D (2.18) BS03 HEM N/A GO:0004601 ... P05164 41043752
    1050578 9qjo:D (2.18) BS04 CA N/A GO:0004601 ... P05164 41043752
    1050579 9qjz:A (2.31) BS01 peptide N/A N/A Q9H2K2 41103766
    1050580 9qjz:B (2.31) BS01 peptide N/A N/A Q9H2K2 41103766
    1050581 9qk2:E (3.5) BS01 MG N/A N/A P06681 41413058
    1050582 9qk4:A (2.0) BS01 FER N/A GO:0004864 ... A0A3Q7HTY9 40527184
    1050583 9qk5:A (1.45) BS01 DHC N/A GO:0004864 ... A0A3Q7HTY9 40527184
    1050584 9qk6:A (1.75) BS01 A1I70 N/A GO:0004864 ... A0A3Q7HTY9 40527184
    1050585 9qkt:B (2.4) BS01 NK3 N/A N/A N/A N/A
    1050586 9qkv:D (2.74) BS01 PSF N/A GO:0001778 ... Q9NZM1 40437073
    1050587 9qkv:D (2.74) BS02 CA N/A GO:0001778 ... Q9NZM1 40437073
    1050588 9qkv:D (2.74) BS03 CA N/A GO:0001778 ... Q9NZM1 40437073
    1050589 9qkv:D (2.74) BS04 CA N/A GO:0001778 ... Q9NZM1 40437073
    1050590 9qkv:D (2.74) BS05 CA N/A GO:0001778 ... Q9NZM1 40437073
    1050591 9qkv:D (2.74) BS06 CA N/A GO:0001778 ... Q9NZM1 40437073
    1050592 9qkv:D (2.74) BS07 CA N/A GO:0001778 ... Q9NZM1 40437073
    1050593 9qkv:D (2.74) BS08 CA N/A GO:0001778 ... Q9NZM1 40437073
    1050594 9qkv:D (2.74) BS09 CA N/A GO:0001778 ... Q9NZM1 40437073
    1050595 9qkv:D (2.74) BS10 PSF N/A GO:0001778 ... Q9NZM1 40437073
    1050596 9qkv:D (2.74) BS11 CA N/A GO:0001778 ... Q9NZM1 40437073
    1050597 9qkv:D (2.74) BS12 CA N/A GO:0001778 ... Q9NZM1 40437073
    1050598 9qky:A (3.86) BS01 dna N/A GO:0003700 ... P70257 41261119
    1050599 9qky:A (3.86) BS02 dna N/A GO:0003700 ... P70257 41261119
    1050600 9qky:A (3.86) BS03 ZN N/A GO:0003700 ... P70257 41261119

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).