SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1051601 9qqb:Bp (3.43) BS02 ZN N/A GO:0003735 ... G1SY53 40639378
    1051602 9qqb:Br (3.43) BS01 rna N/A GO:0003735 ... A0A8C0DF35 40639378
    1051603 9qqb:Bs (3.43) BS01 rna N/A GO:0000027 ... G1SPK4 40639378
    1051604 9qqb:Bt (3.43) BS01 rna N/A GO:0003735 ... G1SMR7 40639378
    1051605 9qqb:Bv (3.43) BS01 rna N/A GO:0003723 ... G1SKZ8 40639378
    1051606 9qqb:Nu (3.43) BS01 rna N/A N/A P20290 40639378
    1051607 9qqb:XA (3.43) BS01 rna N/A GO:0003723 ... Q9BXJ9 40639378
    1051608 9qqj:A (1.69) BS01 A1I8B N/A GO:0000165 ... P63086 41345223
    1051609 9qqk:A (3.14) BS01 BGC N/A N/A G2SWT3 N/A
    1051610 9qqk:A (3.14) BS02 BGC N/A N/A G2SWT3 N/A
    1051611 9qqk:B (3.14) BS01 BGC N/A N/A G2SWT3 N/A
    1051612 9qqk:B (3.14) BS02 BGC N/A N/A G2SWT3 N/A
    1051613 9qqq:0 (2.26) BS01 rna N/A GO:0000027 ... P0A7N9 41282059
    1051614 9qqq:1 (2.26) BS01 rna N/A GO:0002181 ... P0A7P5 41282059
    1051615 9qqq:2 (2.26) BS01 rna N/A GO:0002181 ... P0A7Q1 41282059
    1051616 9qqq:3 (2.26) BS01 rna N/A GO:0002181 ... P0A7Q6 41282059
    1051617 9qqq:3 (2.26) BS02 ZN N/A GO:0002181 ... P0A7Q6 41282059
    1051618 9qqq:4 (2.26) BS01 rna N/A GO:0002181 ... P0A7M9 41282059
    1051619 9qqq:4 (2.26) BS02 ZN N/A GO:0002181 ... P0A7M9 41282059
    1051620 9qqq:B (2.26) BS01 rna N/A GO:0000028 ... P0A7V0 41282059
    1051621 9qqq:C (2.26) BS01 rna N/A GO:0000028 ... P0A7V3 41282059
    1051622 9qqq:D (2.26) BS01 rna N/A GO:0000028 ... P0A7V8 41282059
    1051623 9qqq:E (2.26) BS01 rna N/A GO:0000028 ... P0A7W1 41282059
    1051624 9qqq:F (2.26) BS01 rna N/A GO:0002181 ... P02358 41282059
    1051625 9qqq:G (2.26) BS01 rna N/A GO:0000028 ... P02359 41282059
    1051626 9qqq:H (2.26) BS01 rna N/A GO:0000028 ... P0A7W7 41282059
    1051627 9qqq:I (2.26) BS01 rna N/A GO:0002181 ... P0A7X3 41282059
    1051628 9qqq:I (2.26) BS02 rna N/A GO:0002181 ... P0A7X3 41282059
    1051629 9qqq:J (2.26) BS01 rna N/A GO:0000049 ... P0A7R5 41282059
    1051630 9qqq:K (2.26) BS01 rna N/A GO:0002181 ... P0A7R9 41282059
    1051631 9qqq:L (2.26) BS01 rna N/A GO:0000049 ... P0A7S3 41282059
    1051632 9qqq:M (2.26) BS01 rna N/A GO:0000049 ... P0A7S9 41282059
    1051633 9qqq:M (2.26) BS02 rna N/A GO:0000049 ... P0A7S9 41282059
    1051634 9qqq:N (2.26) BS01 rna N/A GO:0000028 ... P0AG59 41282059
    1051635 9qqq:O (2.26) BS01 rna N/A GO:0000028 ... P0ADZ4 41282059
    1051636 9qqq:O (2.26) BS02 rna N/A GO:0000028 ... P0ADZ4 41282059
    1051637 9qqq:P (2.26) BS01 rna N/A GO:0000028 ... P0A7T3 41282059
    1051638 9qqq:Q (2.26) BS01 rna N/A GO:0000028 ... P0AG63 41282059
    1051639 9qqq:R (2.26) BS01 rna N/A GO:0002181 ... P0A7T7 41282059
    1051640 9qqq:S (2.26) BS01 rna N/A GO:0002181 ... P0A7U3 41282059
    1051641 9qqq:T (2.26) BS01 rna N/A GO:0000028 ... P0A7U7 41282059
    1051642 9qqq:U (2.26) BS01 rna N/A GO:0000028 ... P68679 41282059
    1051643 9qqq:c (2.26) BS01 rna N/A GO:0000027 ... P60422 41282059
    1051644 9qqq:d (2.26) BS01 rna N/A GO:0000027 ... P60438 41282059
    1051645 9qqq:e (2.26) BS01 rna N/A GO:0001070 ... P60723 41282059
    1051646 9qqq:f (2.26) BS01 rna N/A GO:0000027 ... P62399 41282059
    1051647 9qqq:f (2.26) BS02 rna N/A GO:0000027 ... P62399 41282059
    1051648 9qqq:f (2.26) BS03 rna N/A GO:0000027 ... P62399 41282059
    1051649 9qqq:g (2.26) BS01 rna N/A GO:0000027 ... P0AG55 41282059
    1051650 9qqq:h (2.26) BS01 rna N/A GO:0002181 ... P0A7R1 41282059
    1051651 9qqq:i (2.26) BS01 rna N/A GO:0002181 ... P0AA10 41282059
    1051652 9qqq:j (2.26) BS01 rna N/A GO:0002181 ... P0ADY3 41282059
    1051653 9qqq:k (2.26) BS01 rna N/A GO:0002181 ... P02413 41282059
    1051654 9qqq:l (2.26) BS01 rna N/A GO:0000027 ... P0ADY7 41282059
    1051655 9qqq:l (2.26) BS02 rna N/A GO:0000027 ... P0ADY7 41282059
    1051656 9qqq:m (2.26) BS01 rna N/A GO:0000027 ... P0AG44 41282059
    1051657 9qqq:n (2.26) BS01 rna N/A GO:0002181 ... P0C018 41282059
    1051658 9qqq:n (2.26) BS02 rna N/A GO:0002181 ... P0C018 41282059
    1051659 9qqq:o (2.26) BS01 rna N/A GO:0000027 ... P0A7K6 41282059
    1051660 9qqq:o (2.26) BS02 rna N/A GO:0000027 ... P0A7K6 41282059
    1051661 9qqq:p (2.26) BS01 rna N/A GO:0000027 ... P0A7L3 41282059
    1051662 9qqq:q (2.26) BS01 rna N/A GO:0002181 ... P0AG48 41282059
    1051663 9qqq:r (2.26) BS01 rna N/A GO:0002181 ... P61175 41282059
    1051664 9qqq:s (2.26) BS01 rna N/A GO:0000027 ... P0ADZ0 41282059
    1051665 9qqq:t (2.26) BS01 rna N/A GO:0000027 ... P60624 41282059
    1051666 9qqq:u (2.26) BS01 rna N/A GO:0000027 ... P68919 41282059
    1051667 9qqq:v (2.26) BS01 rna N/A GO:0000027 ... P0A7L8 41282059
    1051668 9qqq:v (2.26) BS02 rna N/A GO:0000027 ... P0A7L8 41282059
    1051669 9qqq:w (2.26) BS01 rna N/A GO:0000027 ... P0A7M2 41282059
    1051670 9qqq:x (2.26) BS01 rna N/A GO:0000027 ... P0A7M6 41282059
    1051671 9qqq:y (2.26) BS01 rna N/A GO:0000027 ... P0AG51 41282059
    1051672 9qqq:y (2.26) BS02 rna N/A GO:0000027 ... P0AG51 41282059
    1051673 9qqq:z (2.26) BS01 rna N/A GO:0000027 ... P0A7N4 41282059
    1051674 9qqr:B (4.7) BS01 ATP N/A GO:0005524 ... Q2G0P5 41023306
    1051675 9qqr:B (4.7) BS02 ADP N/A GO:0005524 ... Q2G0P5 41023306
    1051676 9qqr:C (4.7) BS01 ATP N/A GO:0005524 ... Q2G0P5 41023306
    1051677 9qqr:C (4.7) BS02 ADP N/A GO:0005524 ... Q2G0P5 41023306
    1051678 9qqr:D (4.7) BS01 ATP N/A GO:0005524 ... Q2G0P5 41023306
    1051679 9qqr:D (4.7) BS02 ADP N/A GO:0005524 ... Q2G0P5 41023306
    1051680 9qqr:E (4.7) BS01 ATP N/A GO:0005524 ... Q2G0P5 41023306
    1051681 9qqr:F (4.7) BS01 ATP N/A GO:0005524 ... Q2G0P5 41023306
    1051682 9qqr:G (4.7) BS01 ATP N/A GO:0005524 ... Q2G0P5 41023306
    1051683 9qqr:G (4.7) BS02 ADP N/A GO:0005524 ... Q2G0P5 41023306
    1051684 9qqr:H (4.7) BS01 ATP N/A GO:0005524 ... Q2G0P5 41023306
    1051685 9qqr:H (4.7) BS02 ADP N/A GO:0005524 ... Q2G0P5 41023306
    1051686 9qqr:I (4.7) BS01 ATP N/A GO:0005524 ... Q2G0P5 41023306
    1051687 9qqr:I (4.7) BS02 ADP N/A GO:0005524 ... Q2G0P5 41023306
    1051688 9qqr:J (4.7) BS01 ATP N/A GO:0005524 ... Q2G0P5 41023306
    1051689 9qqt:A (0.98) BS01 F43 N/A GO:0015948 ... N/A 40913044
    1051690 9qqt:A (0.98) BS02 TP7 N/A GO:0015948 ... N/A 40913044
    1051691 9qqt:A (0.98) BS03 COM N/A GO:0015948 ... N/A 40913044
    1051692 9qqt:A (0.98) BS04 SHT N/A GO:0015948 ... N/A 40913044
    1051693 9qqt:A (0.98) BS05 F43 N/A GO:0015948 ... N/A 40913044
    1051694 9qqt:A (0.98) BS06 TP7 N/A GO:0015948 ... N/A 40913044
    1051695 9qqt:A (0.98) BS07 SHT N/A GO:0015948 ... N/A 40913044
    1051696 9qqt:B (0.98) BS01 F43 N/A GO:0015948 ... N/A 40913044
    1051697 9qqt:B (0.98) BS02 TP7 N/A GO:0015948 ... N/A 40913044
    1051698 9qqt:B (0.98) BS03 COM N/A GO:0015948 ... N/A 40913044
    1051699 9qqt:B (0.98) BS04 SHT N/A GO:0015948 ... N/A 40913044
    1051700 9qqt:C (0.98) BS01 F43 N/A GO:0015948 ... N/A 40913044
    1051701 9qqt:D (0.98) BS01 F43 N/A GO:0015948 ... N/A 40913044
    1051702 9qqt:D (0.98) BS02 TP7 N/A GO:0015948 ... N/A 40913044
    1051703 9qqt:D (0.98) BS03 SHT N/A GO:0015948 ... N/A 40913044
    1051704 9qqt:D (0.98) BS04 COM N/A GO:0015948 ... N/A 40913044
    1051705 9qqt:D (0.98) BS05 F43 N/A GO:0015948 ... N/A 40913044
    1051706 9qqt:D (0.98) BS06 TP7 N/A GO:0015948 ... N/A 40913044
    1051707 9qqt:D (0.98) BS07 SHT N/A GO:0015948 ... N/A 40913044
    1051708 9qqt:E (0.98) BS01 COM N/A GO:0015948 ... N/A 40913044
    1051709 9qqt:E (0.98) BS02 F43 N/A GO:0015948 ... N/A 40913044
    1051710 9qqt:E (0.98) BS03 TP7 N/A GO:0015948 ... N/A 40913044
    1051711 9qqt:E (0.98) BS04 SHT N/A GO:0015948 ... N/A 40913044
    1051712 9qqt:F (0.98) BS01 F43 N/A GO:0015948 ... N/A 40913044
    1051713 9qqv:A (3.4) BS01 A1I9D N/A GO:0004630 ... P04021 41397984
    1051714 9qqx:A (1.6) BS01 A1I9L N/A GO:0004672 ... P68400 41085029
    1051715 9qr1:A (0.98) BS01 NO3 N/A GO:0015948 ... N/A 40913044
    1051716 9qr1:A (0.98) BS02 F43 N/A GO:0015948 ... N/A 40913044
    1051717 9qr1:A (0.98) BS03 TP7 N/A GO:0015948 ... N/A 40913044
    1051718 9qr1:A (0.98) BS04 COM N/A GO:0015948 ... N/A 40913044
    1051719 9qr1:A (0.98) BS05 F43 N/A GO:0015948 ... N/A 40913044
    1051720 9qr1:A (0.98) BS06 TP7 N/A GO:0015948 ... N/A 40913044
    1051721 9qr1:B (0.98) BS01 F43 N/A GO:0015948 ... N/A 40913044
    1051722 9qr1:B (0.98) BS02 TP7 N/A GO:0015948 ... N/A 40913044
    1051723 9qr1:B (0.98) BS03 COM N/A GO:0015948 ... N/A 40913044
    1051724 9qr1:C (0.98) BS01 F43 N/A GO:0005737 ... P07964 40913044
    1051725 9qr1:D (0.98) BS01 F43 N/A GO:0015948 ... N/A 40913044
    1051726 9qr1:D (0.98) BS02 TP7 N/A GO:0015948 ... N/A 40913044
    1051727 9qr1:D (0.98) BS03 COM N/A GO:0015948 ... N/A 40913044
    1051728 9qr1:D (0.98) BS04 NO3 N/A GO:0015948 ... N/A 40913044
    1051729 9qr1:D (0.98) BS05 F43 N/A GO:0015948 ... N/A 40913044
    1051730 9qr1:D (0.98) BS06 TP7 N/A GO:0015948 ... N/A 40913044
    1051731 9qr1:E (0.98) BS01 COM N/A GO:0015948 ... N/A 40913044
    1051732 9qr1:E (0.98) BS02 F43 N/A GO:0015948 ... N/A 40913044
    1051733 9qr1:E (0.98) BS03 TP7 N/A GO:0015948 ... N/A 40913044
    1051734 9qr1:F (0.98) BS01 F43 N/A GO:0005737 ... P07964 40913044
    1051735 9qr3:A (1.34) BS01 F43 N/A GO:0015948 ... G7WN24 40913044
    1051736 9qr3:A (1.34) BS02 COM N/A GO:0015948 ... G7WN24 40913044
    1051737 9qr3:A (1.34) BS03 TP7 N/A GO:0015948 ... G7WN24 40913044
    1051738 9qr3:A (1.34) BS04 F43 N/A GO:0015948 ... G7WN24 40913044
    1051739 9qr3:A (1.34) BS05 TP7 N/A GO:0015948 ... G7WN24 40913044
    1051740 9qr3:B (1.34) BS01 F43 N/A GO:0015948 ... G7WN21 40913044
    1051741 9qr3:B (1.34) BS02 COM N/A GO:0015948 ... G7WN21 40913044
    1051742 9qr3:B (1.34) BS03 TP7 N/A GO:0015948 ... G7WN21 40913044
    1051743 9qr3:C (1.34) BS01 F43 N/A GO:0015948 ... N/A 40913044
    1051744 9qr3:D (1.34) BS01 F43 N/A GO:0015948 ... G7WN24 40913044
    1051745 9qr3:D (1.34) BS02 TP7 N/A GO:0015948 ... G7WN24 40913044
    1051746 9qr3:D (1.34) BS03 F43 N/A GO:0015948 ... G7WN24 40913044
    1051747 9qr3:D (1.34) BS04 TP7 N/A GO:0015948 ... G7WN24 40913044
    1051748 9qr3:D (1.34) BS05 COM N/A GO:0015948 ... G7WN24 40913044
    1051749 9qr3:E (1.34) BS01 F43 N/A GO:0015948 ... G7WN21 40913044
    1051750 9qr3:E (1.34) BS02 TP7 N/A GO:0015948 ... G7WN21 40913044
    1051751 9qr3:E (1.34) BS03 COM N/A GO:0015948 ... G7WN21 40913044
    1051752 9qr3:F (1.34) BS01 F43 N/A GO:0015948 ... N/A 40913044
    1051753 9qr3:G (1.34) BS01 F43 N/A GO:0015948 ... G7WN24 40913044
    1051754 9qr3:G (1.34) BS02 COM N/A GO:0015948 ... G7WN24 40913044
    1051755 9qr3:G (1.34) BS03 TP7 N/A GO:0015948 ... G7WN24 40913044
    1051756 9qr3:G (1.34) BS04 F43 N/A GO:0015948 ... G7WN24 40913044
    1051757 9qr3:G (1.34) BS05 TP7 N/A GO:0015948 ... G7WN24 40913044
    1051758 9qr3:H (1.34) BS01 F43 N/A GO:0015948 ... G7WN21 40913044
    1051759 9qr3:H (1.34) BS02 COM N/A GO:0015948 ... G7WN21 40913044
    1051760 9qr3:H (1.34) BS03 TP7 N/A GO:0015948 ... G7WN21 40913044
    1051761 9qr3:I (1.34) BS01 F43 N/A GO:0015948 ... N/A 40913044
    1051762 9qr3:J (1.34) BS01 F43 N/A GO:0015948 ... G7WN24 40913044
    1051763 9qr3:J (1.34) BS02 TP7 N/A GO:0015948 ... G7WN24 40913044
    1051764 9qr3:J (1.34) BS03 F43 N/A GO:0015948 ... G7WN24 40913044
    1051765 9qr3:J (1.34) BS04 TP7 N/A GO:0015948 ... G7WN24 40913044
    1051766 9qr3:J (1.34) BS05 COM N/A GO:0015948 ... G7WN24 40913044
    1051767 9qr3:K (1.34) BS01 F43 N/A GO:0015948 ... G7WN21 40913044
    1051768 9qr3:K (1.34) BS02 TP7 N/A GO:0015948 ... G7WN21 40913044
    1051769 9qr3:K (1.34) BS03 COM N/A GO:0015948 ... G7WN21 40913044
    1051770 9qr3:L (1.34) BS01 F43 N/A GO:0015948 ... N/A 40913044
    1051771 9qr3:M (1.34) BS01 F43 N/A GO:0015948 ... G7WN24 40913044
    1051772 9qr3:M (1.34) BS02 COM N/A GO:0015948 ... G7WN24 40913044
    1051773 9qr3:M (1.34) BS03 TP7 N/A GO:0015948 ... G7WN24 40913044
    1051774 9qr3:M (1.34) BS04 TP7 N/A GO:0015948 ... G7WN24 40913044
    1051775 9qr3:M (1.34) BS05 F43 N/A GO:0015948 ... G7WN24 40913044
    1051776 9qr3:N (1.34) BS01 F43 N/A GO:0015948 ... G7WN21 40913044
    1051777 9qr3:N (1.34) BS02 COM N/A GO:0015948 ... G7WN21 40913044
    1051778 9qr3:N (1.34) BS03 TP7 N/A GO:0015948 ... G7WN21 40913044
    1051779 9qr3:O (1.34) BS01 F43 N/A GO:0015948 ... N/A 40913044
    1051780 9qr3:P (1.34) BS01 F43 N/A GO:0015948 ... G7WN24 40913044
    1051781 9qr3:P (1.34) BS02 TP7 N/A GO:0015948 ... G7WN24 40913044
    1051782 9qr3:P (1.34) BS03 TP7 N/A GO:0015948 ... G7WN24 40913044
    1051783 9qr3:P (1.34) BS04 F43 N/A GO:0015948 ... G7WN24 40913044
    1051784 9qr3:P (1.34) BS05 COM N/A GO:0015948 ... G7WN24 40913044
    1051785 9qr3:Q (1.34) BS01 TP7 N/A GO:0015948 ... G7WN21 40913044
    1051786 9qr3:Q (1.34) BS02 F43 N/A GO:0015948 ... G7WN21 40913044
    1051787 9qr3:Q (1.34) BS03 COM N/A GO:0015948 ... G7WN21 40913044
    1051788 9qr3:R (1.34) BS01 F43 N/A GO:0015948 ... N/A 40913044
    1051789 9qr3:S (1.34) BS01 F43 N/A GO:0015948 ... G7WN24 40913044
    1051790 9qr3:S (1.34) BS02 COM N/A GO:0015948 ... G7WN24 40913044
    1051791 9qr3:S (1.34) BS03 TP7 N/A GO:0015948 ... G7WN24 40913044
    1051792 9qr3:S (1.34) BS04 F43 N/A GO:0015948 ... G7WN24 40913044
    1051793 9qr3:S (1.34) BS05 TP7 N/A GO:0015948 ... G7WN24 40913044
    1051794 9qr3:T (1.34) BS01 F43 N/A GO:0015948 ... G7WN21 40913044
    1051795 9qr3:T (1.34) BS02 COM N/A GO:0015948 ... G7WN21 40913044
    1051796 9qr3:T (1.34) BS03 TP7 N/A GO:0015948 ... G7WN21 40913044
    1051797 9qr3:U (1.34) BS01 F43 N/A GO:0015948 ... N/A 40913044
    1051798 9qr3:V (1.34) BS01 F43 N/A GO:0015948 ... G7WN24 40913044
    1051799 9qr3:V (1.34) BS02 TP7 N/A GO:0015948 ... G7WN24 40913044
    1051800 9qr3:V (1.34) BS03 F43 N/A GO:0015948 ... G7WN24 40913044

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).