SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1052401 9qy3:g (2.9) BS01 rna N/A N/A N/A 41326719
    1052402 9qy3:h (2.9) BS01 rna N/A N/A N/A 41326719
    1052403 9qy3:i (2.9) BS01 rna N/A N/A N/A 41326719
    1052404 9qy3:j (2.9) BS01 rna N/A N/A N/A 41326719
    1052405 9qy3:k (2.9) BS01 rna N/A N/A N/A 41326719
    1052406 9qy3:l (2.9) BS01 rna N/A N/A N/A 41326719
    1052407 9qy3:m (2.9) BS01 rna N/A N/A N/A 41326719
    1052408 9qy3:n (2.9) BS01 rna N/A N/A N/A 41326719
    1052409 9qy3:o (2.9) BS01 rna N/A N/A N/A 41326719
    1052410 9qy3:p (2.9) BS01 rna N/A N/A N/A 41326719
    1052411 9qy3:q (2.9) BS01 rna N/A N/A N/A 41326719
    1052412 9qy3:r (2.9) BS01 rna N/A N/A N/A 41326719
    1052413 9qy3:s (2.9) BS01 rna N/A N/A N/A 41326719
    1052414 9qy7:A (1.39) BS01 A1JB4 N/A GO:0004672 ... P68400 41085029
    1052415 9qye:A (1.44) BS01 AR6 N/A N/A Q8IXQ6 N/A
    1052416 9qyf:A (1.3) BS01 APR N/A N/A Q8IXQ6 N/A
    1052417 9qyf:A (1.3) BS02 AR6 N/A N/A Q8IXQ6 N/A
    1052418 9qyh:A (2.5) BS01 NAD N/A N/A Q8IXQ6 N/A
    1052419 9qyh:B (2.5) BS01 NAD N/A N/A Q8IXQ6 N/A
    1052420 9qyv:A (1.9) BS01 IHS N/A GO:0016020 ... Q89YI8 N/A
    1052421 9qyv:B (1.9) BS01 IHS N/A GO:0016020 ... Q89YI8 N/A
    1052422 9qyv:B (1.9) BS02 IHS N/A GO:0016020 ... Q89YI8 N/A
    1052423 9qyw:A (1.76) BS01 IHS N/A GO:0016020 ... Q89YI8 N/A
    1052424 9qyw:A (1.76) BS02 IHS N/A GO:0016020 ... Q89YI8 N/A
    1052425 9qyw:A (1.76) BS03 IHS N/A GO:0016020 ... Q89YI8 N/A
    1052426 9qyw:B (1.76) BS01 IHS N/A GO:0016020 ... Q89YI8 N/A
    1052427 9qyw:B (1.76) BS02 IHS N/A GO:0016020 ... Q89YI8 N/A
    1052428 9qyx:A (1.54) BS01 IHS N/A GO:0016020 ... Q89YI8 N/A
    1052429 9qyx:A (1.54) BS02 IHS N/A GO:0016020 ... Q89YI8 N/A
    1052430 9qyx:B (1.54) BS01 IHS N/A GO:0016020 ... Q89YI8 N/A
    1052431 9qyx:B (1.54) BS02 IHS N/A GO:0016020 ... Q89YI8 N/A
    1052432 9qz0:AA (1.86) BS01 IHP N/A GO:0016020 ... Q89YI8 N/A
    1052433 9qz0:AA (1.86) BS02 IHP N/A GO:0016020 ... Q89YI8 N/A
    1052434 9qz0:BA (1.86) BS01 IHP N/A GO:0016020 ... Q89YI8 N/A
    1052435 9qz0:BA (1.86) BS02 IHP N/A GO:0016020 ... Q89YI8 N/A
    1052436 9qz1:A (2.45) BS01 ZNZ N/A GO:0016020 ... Q89YI8 N/A
    1052437 9qz1:A (2.45) BS02 ZNZ N/A GO:0016020 ... Q89YI8 N/A
    1052438 9qz1:B (2.45) BS01 ZNZ N/A GO:0016020 ... Q89YI8 N/A
    1052439 9qz1:B (2.45) BS02 ZNZ N/A GO:0016020 ... Q89YI8 N/A
    1052440 9qz3:A (1.8) BS01 IHS N/A GO:0016020 ... Q89YI8 N/A
    1052441 9qz3:B (1.8) BS01 IHS N/A GO:0016020 ... Q89YI8 N/A
    1052442 9qz4:A (1.63) BS01 TPW N/A GO:0000287 ... P0DUV9 41606311
    1052443 9qz4:A (1.63) BS02 3KK N/A GO:0000287 ... P0DUV9 41606311
    1052444 9qz4:A (1.63) BS03 MG N/A GO:0000287 ... P0DUV9 41606311
    1052445 9qz4:A (1.63) BS04 MG N/A GO:0000287 ... P0DUV9 41606311
    1052446 9qz4:A (1.63) BS05 TPW N/A GO:0000287 ... P0DUV9 41606311
    1052447 9qz4:B (1.63) BS01 TPW N/A GO:0000287 ... P0DUV9 41606311
    1052448 9qz4:B (1.63) BS02 3KK N/A GO:0000287 ... P0DUV9 41606311
    1052449 9qz4:B (1.63) BS03 TPW N/A GO:0000287 ... P0DUV9 41606311
    1052450 9qz4:B (1.63) BS04 3KK N/A GO:0000287 ... P0DUV9 41606311
    1052451 9qz4:B (1.63) BS05 MG N/A GO:0000287 ... P0DUV9 41606311
    1052452 9qz5:A (1.572) BS01 TPW N/A GO:0000287 ... P0DUV9 41606311
    1052453 9qz5:A (1.572) BS02 3KK N/A GO:0000287 ... P0DUV9 41606311
    1052454 9qz5:A (1.572) BS03 MG N/A GO:0000287 ... P0DUV9 41606311
    1052455 9qz5:A (1.572) BS04 TPW N/A GO:0000287 ... P0DUV9 41606311
    1052456 9qz5:B (1.572) BS01 TPW N/A GO:0000287 ... P0DUV9 41606311
    1052457 9qz5:B (1.572) BS02 3KK N/A GO:0000287 ... P0DUV9 41606311
    1052458 9qz5:B (1.572) BS03 TPW N/A GO:0000287 ... P0DUV9 41606311
    1052459 9qz5:B (1.572) BS04 MG N/A GO:0000287 ... P0DUV9 41606311
    1052460 9qz6:A (1.551) BS01 TPW N/A GO:0000287 ... P0DUV9 41606311
    1052461 9qz6:A (1.551) BS02 MG N/A GO:0000287 ... P0DUV9 41606311
    1052462 9qz6:A (1.551) BS03 A1JCA N/A GO:0000287 ... P0DUV9 41606311
    1052463 9qz6:A (1.551) BS04 TPW N/A GO:0000287 ... P0DUV9 41606311
    1052464 9qz6:A (1.551) BS05 A1JCA N/A GO:0000287 ... P0DUV9 41606311
    1052465 9qz6:B (1.551) BS01 TPW N/A GO:0000287 ... P0DUV9 41606311
    1052466 9qz6:B (1.551) BS02 A1JCA N/A GO:0000287 ... P0DUV9 41606311
    1052467 9qz6:B (1.551) BS03 TPW N/A GO:0000287 ... P0DUV9 41606311
    1052468 9qz6:B (1.551) BS04 MG N/A GO:0000287 ... P0DUV9 41606311
    1052469 9qz6:B (1.551) BS05 A1JCA N/A GO:0000287 ... P0DUV9 41606311
    1052470 9qz7:A (1.72) BS01 TPW N/A GO:0000287 ... P0DUV9 41606311
    1052471 9qz7:A (1.72) BS02 MG N/A GO:0000287 ... P0DUV9 41606311
    1052472 9qz7:A (1.72) BS03 A1JCA N/A GO:0000287 ... P0DUV9 41606311
    1052473 9qz7:A (1.72) BS04 TPW N/A GO:0000287 ... P0DUV9 41606311
    1052474 9qz7:B (1.72) BS01 TPW N/A GO:0000287 ... P0DUV9 41606311
    1052475 9qz7:B (1.72) BS02 A1JCA N/A GO:0000287 ... P0DUV9 41606311
    1052476 9qz7:B (1.72) BS03 TPW N/A GO:0000287 ... P0DUV9 41606311
    1052477 9qz7:B (1.72) BS04 MG N/A GO:0000287 ... P0DUV9 41606311
    1052478 9qz7:B (1.72) BS05 A1JCA N/A GO:0000287 ... P0DUV9 41606311
    1052479 9qze:A (2.01) BS01 NAD N/A GO:0001758 ... P47895 40829477
    1052480 9qze:B (2.01) BS01 NAD N/A GO:0001758 ... P47895 40829477
    1052481 9qzl:A (2.9) BS01 A1JB9 N/A N/A Q15233 N/A
    1052482 9qzl:B (2.9) BS01 A1JB9 N/A N/A Q15233 N/A
    1052483 9qzo:A (2.9) BS01 Y01 N/A GO:0005319 ... Q00910 N/A
    1052484 9qzq:A (3.11) BS01 NA N/A GO:0005515 ... Q14973 41138719
    1052485 9qzq:A (3.11) BS02 NA N/A GO:0005515 ... Q14973 41138719
    1052486 9r04:A (4.2) BS01 dna N/A GO:0000786 ... P68431 N/A
    1052487 9r04:A (4.2) BS02 dna N/A GO:0000786 ... P68431 N/A
    1052488 9r04:B (4.2) BS01 dna N/A GO:0000781 ... P62805 N/A
    1052489 9r04:B (4.2) BS02 dna N/A GO:0000781 ... P62805 N/A
    1052490 9r04:C (4.2) BS01 dna N/A GO:0000786 ... P04908 N/A
    1052491 9r04:C (4.2) BS02 dna N/A GO:0000786 ... P04908 N/A
    1052492 9r04:D (4.2) BS01 dna N/A GO:0000786 ... P06899 N/A
    1052493 9r04:E (4.2) BS01 dna N/A GO:0000786 ... P68431 N/A
    1052494 9r04:E (4.2) BS02 dna N/A GO:0000786 ... P68431 N/A
    1052495 9r04:F (4.2) BS01 dna N/A GO:0000781 ... P62805 N/A
    1052496 9r04:G (4.2) BS01 dna N/A GO:0000786 ... P04908 N/A
    1052497 9r04:G (4.2) BS02 dna N/A GO:0000786 ... P04908 N/A
    1052498 9r04:H (4.2) BS01 dna N/A GO:0000786 ... P06899 N/A
    1052499 9r04:K (4.2) BS01 dna N/A GO:0000122 ... P04637 N/A
    1052500 9r04:L (4.2) BS01 dna N/A GO:0000122 ... P04637 N/A
    1052501 9r04:L (4.2) BS02 dna N/A GO:0000122 ... P04637 N/A
    1052502 9r04:M (4.2) BS01 dna N/A GO:0000122 ... P04637 N/A
    1052503 9r04:M (4.2) BS02 dna N/A GO:0000122 ... P04637 N/A
    1052504 9r04:N (4.2) BS01 dna N/A GO:0000122 ... P04637 N/A
    1052505 9r07:A (3.2) BS01 ZLK N/A GO:0005319 ... Q00910 N/A
    1052506 9r07:A (3.2) BS02 Y01 N/A GO:0005319 ... Q00910 N/A
    1052507 9r08:A (2.4) BS01 IPE N/A GO:0004659 ... Q86SQ9 41315348
    1052508 9r08:A (2.4) BS02 FPS N/A GO:0004659 ... Q86SQ9 41315348
    1052509 9r08:B (2.4) BS01 IPE N/A GO:0016765 ... Q96E22 41315348
    1052510 9r0a:A (3.1) BS01 A1JBL N/A GO:0005319 ... Q00910 N/A
    1052511 9r0a:A (3.1) BS02 AV0 N/A GO:0005319 ... Q00910 N/A
    1052512 9r0d:A (2.4) BS01 ZN N/A GO:0000166 ... P21589 41139398
    1052513 9r0d:A (2.4) BS02 ZN N/A GO:0000166 ... P21589 41139398
    1052514 9r0d:A (2.4) BS03 CA N/A GO:0000166 ... P21589 41139398
    1052515 9r0d:A (2.4) BS04 A1JCF N/A GO:0000166 ... P21589 41139398
    1052516 9r0d:B (2.4) BS01 ZN N/A GO:0000166 ... P21589 41139398
    1052517 9r0d:B (2.4) BS02 ZN N/A GO:0000166 ... P21589 41139398
    1052518 9r0d:B (2.4) BS03 CA N/A GO:0000166 ... P21589 41139398
    1052519 9r0d:B (2.4) BS04 A1JCF N/A GO:0000166 ... P21589 41139398
    1052520 9r0e:A (2.82) BS01 IPE N/A GO:0004659 ... Q86SQ9 41315348
    1052521 9r0e:A (2.82) BS02 FPS N/A GO:0004659 ... Q86SQ9 41315348
    1052522 9r0e:B (2.82) BS01 IPE N/A GO:0016765 ... Q96E22 41315348
    1052523 9r0g:A (2.43) BS01 ZN N/A GO:0000166 ... P21589 41139398
    1052524 9r0g:A (2.43) BS02 ZN N/A GO:0000166 ... P21589 41139398
    1052525 9r0g:A (2.43) BS03 CA N/A GO:0000166 ... P21589 41139398
    1052526 9r0g:A (2.43) BS04 A1JCG N/A GO:0000166 ... P21589 41139398
    1052527 9r0g:B (2.43) BS01 ZN N/A GO:0000166 ... P21589 41139398
    1052528 9r0g:B (2.43) BS02 ZN N/A GO:0000166 ... P21589 41139398
    1052529 9r0g:B (2.43) BS03 CA N/A GO:0000166 ... P21589 41139398
    1052530 9r0g:B (2.43) BS04 A1JCG N/A GO:0000166 ... P21589 41139398
    1052531 9r0g:B (2.43) BS05 PO4 N/A GO:0000166 ... P21589 41139398
    1052532 9r0h:A (2.28) BS01 ZN N/A GO:0000166 ... P21589 41139398
    1052533 9r0h:A (2.28) BS02 ZN N/A GO:0000166 ... P21589 41139398
    1052534 9r0h:A (2.28) BS03 CA N/A GO:0000166 ... P21589 41139398
    1052535 9r0h:A (2.28) BS04 A1JCH N/A GO:0000166 ... P21589 41139398
    1052536 9r0h:A (2.28) BS05 PO4 N/A GO:0000166 ... P21589 41139398
    1052537 9r0h:B (2.28) BS01 ZN N/A GO:0000166 ... P21589 41139398
    1052538 9r0h:B (2.28) BS02 ZN N/A GO:0000166 ... P21589 41139398
    1052539 9r0h:B (2.28) BS03 CA N/A GO:0000166 ... P21589 41139398
    1052540 9r0h:B (2.28) BS04 A1JCH N/A GO:0000166 ... P21589 41139398
    1052541 9r0h:B (2.28) BS05 PO4 N/A GO:0000166 ... P21589 41139398
    1052542 9r0i:A (3.1) BS01 LSN N/A GO:0005319 ... Q00910 N/A
    1052543 9r0l:A (1.45) BS01 ZN N/A GO:0004089 ... O43570 40833423
    1052544 9r0l:A (1.45) BS02 A1H9A N/A GO:0004089 ... O43570 40833423
    1052545 9r0l:B (1.45) BS01 ZN N/A GO:0004089 ... O43570 40833423
    1052546 9r0l:B (1.45) BS02 A1H9A N/A GO:0004089 ... O43570 40833423
    1052547 9r0l:C (1.45) BS01 ZN N/A GO:0004089 ... O43570 40833423
    1052548 9r0l:C (1.45) BS02 A1H9A N/A GO:0004089 ... O43570 40833423
    1052549 9r0l:D (1.45) BS01 ZN N/A GO:0004089 ... O43570 40833423
    1052550 9r0l:D (1.45) BS02 A1H9A N/A GO:0004089 ... O43570 40833423
    1052551 9r0m:A (3.2) BS01 P2E N/A GO:0005319 ... Q00910 N/A
    1052552 9r0m:A (3.2) BS02 Y01 N/A GO:0005319 ... Q00910 N/A
    1052553 9r0n:A (3.4) BS01 UGU N/A GO:0005319 ... Q00910 N/A
    1052554 9r0n:A (3.4) BS02 Y01 N/A GO:0005319 ... Q00910 N/A
    1052555 9r0o:A (3.1) BS01 TCW N/A GO:0005319 ... Q00910 N/A
    1052556 9r0q:A (2.35) BS01 TB N/A GO:0004063 ... P27170 40735812
    1052557 9r0q:A (2.35) BS02 TB N/A GO:0004063 ... P27170 40735812
    1052558 9r0q:A (2.35) BS03 CA N/A GO:0004063 ... P27170 40735812
    1052559 9r0q:A (2.35) BS04 CA N/A GO:0004063 ... P27170 40735812
    1052560 9r0q:A (2.35) BS05 OCH N/A GO:0004063 ... P27170 40735812
    1052561 9r0r:A (1.8) BS01 1S6 N/A N/A Q7BGE9 41326695
    1052562 9r0t:A (1.9) BS01 ZN N/A N/A N/A 41074781
    1052563 9r0t:A (1.9) BS02 ZN N/A N/A N/A 41074781
    1052564 9r0t:B (1.9) BS01 ZN N/A N/A N/A 41074781
    1052565 9r0u:A (1.19) BS01 ZN N/A GO:0004089 ... O43570 40833423
    1052566 9r0u:A (1.19) BS02 A1H92 N/A GO:0004089 ... O43570 40833423
    1052567 9r0u:B (1.19) BS01 ZN N/A GO:0004089 ... O43570 40833423
    1052568 9r0u:B (1.19) BS02 A1H92 N/A GO:0004089 ... O43570 40833423
    1052569 9r0u:C (1.19) BS01 ZN N/A GO:0004089 ... O43570 40833423
    1052570 9r0u:C (1.19) BS02 A1H92 N/A GO:0004089 ... O43570 40833423
    1052571 9r0u:D (1.19) BS01 ZN N/A GO:0004089 ... O43570 40833423
    1052572 9r0u:D (1.19) BS02 A1H92 N/A GO:0004089 ... O43570 40833423
    1052573 9r0v:A (1.341) BS01 A1JCI N/A GO:0005829 ... Q30W70 41614677
    1052574 9r0v:B (1.341) BS01 A1JCI N/A GO:0005829 ... Q30W70 41614677
    1052575 9r0v:C (1.341) BS01 A1JCI N/A GO:0005829 ... Q30W70 41614677
    1052576 9r0v:D (1.341) BS01 A1JCI N/A GO:0005829 ... Q30W70 41614677
    1052577 9r0w:A (2.71) BS01 FMN N/A GO:0005737 ... P73835 41527426
    1052578 9r0w:B (2.71) BS01 FMN N/A GO:0005737 ... P73835 41527426
    1052579 9r0w:C (2.71) BS01 FMN N/A GO:0005737 ... P73835 41527426
    1052580 9r0w:D (2.71) BS01 FMN N/A GO:0005737 ... P73835 41527426
    1052581 9r0w:E (2.71) BS01 FMN N/A GO:0005737 ... P73835 41527426
    1052582 9r0x:A (1.13) BS01 ZN N/A GO:0008270 ... C7C422 N/A
    1052583 9r0x:A (1.13) BS02 ZN N/A GO:0008270 ... C7C422 N/A
    1052584 9r0x:A (1.13) BS03 A1JCJ N/A GO:0008270 ... C7C422 N/A
    1052585 9r0x:B (1.13) BS01 ZN N/A GO:0008270 ... C7C422 N/A
    1052586 9r0x:B (1.13) BS02 ZN N/A GO:0008270 ... C7C422 N/A
    1052587 9r0x:B (1.13) BS03 A1JCJ N/A GO:0008270 ... C7C422 N/A
    1052588 9r0y:A (1.27) BS01 ZN N/A GO:0008270 ... C7C422 N/A
    1052589 9r0y:A (1.27) BS02 ZN N/A GO:0008270 ... C7C422 N/A
    1052590 9r0y:A (1.27) BS03 A1JCK N/A GO:0008270 ... C7C422 N/A
    1052591 9r0y:B (1.27) BS01 ZN N/A GO:0008270 ... C7C422 N/A
    1052592 9r0y:B (1.27) BS02 A1JCK N/A GO:0008270 ... C7C422 N/A
    1052593 9r0y:B (1.27) BS03 ZN N/A GO:0008270 ... C7C422 N/A
    1052594 9r10:A (3.3) BS01 CLR N/A GO:0005515 ... Q96FL8 41145429
    1052595 9r10:A (3.3) BS02 CLR N/A GO:0005515 ... Q96FL8 41145429
    1052596 9r10:A (3.3) BS03 CLR N/A GO:0005515 ... Q96FL8 41145429
    1052597 9r10:A (3.3) BS04 CLR N/A GO:0005515 ... Q96FL8 41145429
    1052598 9r10:A (3.3) BS05 SD9 N/A GO:0005515 ... Q96FL8 41145429
    1052599 9r10:A (3.3) BS06 CLR N/A GO:0005515 ... Q96FL8 41145429
    1052600 9r1c:A (1.69) BS01 A1JB1 N/A N/A Q14145 41242018

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).