SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1052601 9r1d:A (3.21) BS01 dna N/A GO:0000781 ... Q387X7 41709455
    1052602 9r1d:A (3.21) BS02 dna N/A GO:0000781 ... Q387X7 41709455
    1052603 9r1d:B (3.21) BS01 dna N/A GO:0005634 ... Q587H6 41709455
    1052604 9r1d:B (3.21) BS02 dna N/A GO:0005634 ... Q587H6 41709455
    1052605 9r1d:C (3.21) BS01 dna N/A GO:0000786 ... Q57YA3 41709455
    1052606 9r1d:C (3.21) BS02 dna N/A GO:0000786 ... Q57YA3 41709455
    1052607 9r1d:D (3.21) BS01 dna N/A GO:0003677 ... Q389T1 41709455
    1052608 9r1d:D (3.21) BS02 dna N/A GO:0003677 ... Q389T1 41709455
    1052609 9r1d:E (3.21) BS01 dna N/A GO:0000781 ... Q387X7 41709455
    1052610 9r1d:E (3.21) BS02 dna N/A GO:0000781 ... Q387X7 41709455
    1052611 9r1d:F (3.21) BS01 dna N/A GO:0005634 ... Q587H6 41709455
    1052612 9r1d:F (3.21) BS02 dna N/A GO:0005634 ... Q587H6 41709455
    1052613 9r1d:G (3.21) BS01 dna N/A GO:0000786 ... Q57YA3 41709455
    1052614 9r1d:G (3.21) BS02 dna N/A GO:0000786 ... Q57YA3 41709455
    1052615 9r1d:H (3.21) BS01 dna N/A GO:0003677 ... Q389T1 41709455
    1052616 9r1d:H (3.21) BS02 dna N/A GO:0003677 ... Q389T1 41709455
    1052617 9r1e:A (3.2) BS01 WRF N/A GO:0005515 ... Q96FL8 41145429
    1052618 9r1e:A (3.2) BS02 CLR N/A GO:0005515 ... Q96FL8 41145429
    1052619 9r1e:A (3.2) BS03 CLR N/A GO:0005515 ... Q96FL8 41145429
    1052620 9r1e:A (3.2) BS04 CLR N/A GO:0005515 ... Q96FL8 41145429
    1052621 9r1e:A (3.2) BS05 CLR N/A GO:0005515 ... Q96FL8 41145429
    1052622 9r1e:A (3.2) BS06 CLR N/A GO:0005515 ... Q96FL8 41145429
    1052623 9r1f:A (2.31) BS01 CLR N/A GO:0005515 ... Q96FL8 41145429
    1052624 9r1f:A (2.31) BS02 CLR N/A GO:0005515 ... Q96FL8 41145429
    1052625 9r1f:A (2.31) BS03 CLR N/A GO:0005515 ... Q96FL8 41145429
    1052626 9r1f:A (2.31) BS04 CLR N/A GO:0005515 ... Q96FL8 41145429
    1052627 9r1f:A (2.31) BS05 MF8 N/A GO:0005515 ... Q96FL8 41145429
    1052628 9r1g:A (2.95) BS01 CLR N/A GO:0005515 ... Q96FL8 41145429
    1052629 9r1g:A (2.95) BS02 CLR N/A GO:0005515 ... Q96FL8 41145429
    1052630 9r1g:A (2.95) BS03 CLR N/A GO:0005515 ... Q96FL8 41145429
    1052631 9r1g:A (2.95) BS04 CLR N/A GO:0005515 ... Q96FL8 41145429
    1052632 9r1h:A (3.02) BS01 GLY N/A N/A N/A 41332641
    1052633 9r1i:A (2.53) BS01 A1JBX N/A N/A Q14145 41242018
    1052634 9r1p:A (2.29) BS01 A1JBJ N/A N/A Q9UNE7 40931108
    1052635 9r1q:A (2.24) BS01 MAN N/A GO:0019031 ... B2BW33 N/A
    1052636 9r1q:A (2.24) BS02 FUC N/A GO:0019031 ... B2BW33 N/A
    1052637 9r1q:A (2.24) BS03 FUC N/A GO:0019031 ... B2BW33 N/A
    1052638 9r1q:B (2.24) BS01 MAN N/A GO:0019031 ... B2BW33 N/A
    1052639 9r1q:B (2.24) BS02 FUC N/A GO:0019031 ... B2BW33 N/A
    1052640 9r1q:B (2.24) BS03 FUC N/A GO:0019031 ... B2BW33 N/A
    1052641 9r1q:C (2.24) BS01 MAN N/A GO:0019031 ... B2BW33 N/A
    1052642 9r1q:C (2.24) BS02 FUC N/A GO:0019031 ... B2BW33 N/A
    1052643 9r1q:C (2.24) BS03 FUC N/A GO:0019031 ... B2BW33 N/A
    1052644 9r1w:AAA (2.2) BS01 A1JCP N/A N/A P53350 41246821
    1052645 9r1w:BBB (2.2) BS01 A1JCP N/A N/A P53350 41246821
    1052646 9r1x:A (2.84) BS01 R78 N/A N/A P53350 41246821
    1052647 9r1x:B (2.84) BS01 R78 N/A N/A P53350 41246821
    1052648 9r1y:AAA (2.602) BS01 A1JCQ N/A N/A P53350 41246821
    1052649 9r1y:BBB (2.602) BS01 A1JCQ N/A N/A P53350 41246821
    1052650 9r1z:A (1.5) BS01 A1JB1 N/A N/A Q14145 41242018
    1052651 9r1z:A (1.5) BS02 A1JB1 N/A N/A Q14145 41242018
    1052652 9r22:A (2.48) BS01 RET N/A GO:0005216 ... A0A0M5L0M3 40651474
    1052653 9r22:B (2.48) BS01 RET N/A GO:0005216 ... A0A0M5L0M3 40651474
    1052654 9r22:C (2.48) BS01 RET N/A GO:0005216 ... A0A0M5L0M3 40651474
    1052655 9r22:D (2.48) BS01 RET N/A GO:0005216 ... A0A0M5L0M3 40651474
    1052656 9r22:E (2.48) BS01 RET N/A GO:0005216 ... A0A0M5L0M3 40651474
    1052657 9r23:A (2.81) BS01 RET N/A GO:0016020 ... N/A 40651474
    1052658 9r23:B (2.81) BS01 RET N/A GO:0016020 ... N/A 40651474
    1052659 9r23:C (2.81) BS01 RET N/A GO:0016020 ... N/A 40651474
    1052660 9r23:D (2.81) BS01 RET N/A GO:0016020 ... N/A 40651474
    1052661 9r23:E (2.81) BS01 RET N/A GO:0016020 ... N/A 40651474
    1052662 9r2e:P (2.54) BS01 MG N/A N/A P01876 N/A
    1052663 9r2g:A (2.8) BS01 HDD N/A N/A N/A 41805574
    1052664 9r2g:A (2.8) BS02 HEB N/A N/A N/A 41805574
    1052665 9r2g:A (2.8) BS03 HEB N/A N/A N/A 41805574
    1052666 9r2g:A (2.8) BS04 MQ9 N/A N/A N/A 41805574
    1052667 9r2g:D (2.8) BS01 HDD N/A N/A N/A 41805574
    1052668 9r2g:D (2.8) BS02 MQ9 N/A N/A N/A 41805574
    1052669 9r2g:D (2.8) BS03 MQ9 N/A N/A N/A 41805574
    1052670 9r2g:D (2.8) BS04 MQ9 N/A N/A N/A 41805574
    1052671 9r2i:C (3.3) BS01 AGS N/A N/A N/A N/A
    1052672 9r2j:AAA (1.8) BS01 FAD N/A GO:0005515 ... P27338 40738081
    1052673 9r2j:AAA (1.8) BS02 C15 N/A GO:0005515 ... P27338 40738081
    1052674 9r2j:AAA (1.8) BS03 A1JCO N/A GO:0005515 ... P27338 40738081
    1052675 9r2j:BBB (1.8) BS01 FAD N/A GO:0005515 ... P27338 40738081
    1052676 9r2j:BBB (1.8) BS02 C15 N/A GO:0005515 ... P27338 40738081
    1052677 9r2j:BBB (1.8) BS03 A1JCO N/A GO:0005515 ... P27338 40738081
    1052678 9r2l:A (2.2) BS01 ETA N/A N/A N/A N/A
    1052679 9r2m:A (3.5) BS01 dna N/A GO:0000786 ... P68431 N/A
    1052680 9r2m:A (3.5) BS02 dna N/A GO:0000786 ... P68431 N/A
    1052681 9r2m:B (3.5) BS01 dna N/A GO:0000781 ... P62805 N/A
    1052682 9r2m:B (3.5) BS02 dna N/A GO:0000781 ... P62805 N/A
    1052683 9r2m:C (3.5) BS01 dna N/A GO:0000786 ... P04908 N/A
    1052684 9r2m:C (3.5) BS02 dna N/A GO:0000786 ... P04908 N/A
    1052685 9r2m:D (3.5) BS01 dna N/A GO:0000786 ... P06899 N/A
    1052686 9r2m:D (3.5) BS02 dna N/A GO:0000786 ... P06899 N/A
    1052687 9r2m:E (3.5) BS01 dna N/A GO:0000786 ... P68431 N/A
    1052688 9r2m:E (3.5) BS02 dna N/A GO:0000786 ... P68431 N/A
    1052689 9r2m:F (3.5) BS01 dna N/A GO:0000781 ... P62805 N/A
    1052690 9r2m:F (3.5) BS02 dna N/A GO:0000781 ... P62805 N/A
    1052691 9r2m:G (3.5) BS01 dna N/A GO:0000786 ... P04908 N/A
    1052692 9r2m:G (3.5) BS02 dna N/A GO:0000786 ... P04908 N/A
    1052693 9r2m:H (3.5) BS01 dna N/A GO:0000786 ... P06899 N/A
    1052694 9r2m:M (3.5) BS01 dna N/A GO:0000122 ... P04637 N/A
    1052695 9r2p:A (4.18) BS01 dna N/A GO:0000786 ... P68431 N/A
    1052696 9r2p:A (4.18) BS02 dna N/A GO:0000786 ... P68431 N/A
    1052697 9r2p:B (4.18) BS01 dna N/A GO:0000781 ... P62805 N/A
    1052698 9r2p:B (4.18) BS02 dna N/A GO:0000781 ... P62805 N/A
    1052699 9r2p:C (4.18) BS01 dna N/A GO:0000786 ... P04908 N/A
    1052700 9r2p:C (4.18) BS02 dna N/A GO:0000786 ... P04908 N/A
    1052701 9r2p:D (4.18) BS01 dna N/A GO:0000786 ... P06899 N/A
    1052702 9r2p:E (4.18) BS01 dna N/A GO:0000786 ... P68431 N/A
    1052703 9r2p:E (4.18) BS02 dna N/A GO:0000786 ... P68431 N/A
    1052704 9r2p:F (4.18) BS01 dna N/A GO:0000781 ... P62805 N/A
    1052705 9r2p:F (4.18) BS02 dna N/A GO:0000781 ... P62805 N/A
    1052706 9r2p:G (4.18) BS01 dna N/A GO:0000786 ... P04908 N/A
    1052707 9r2p:G (4.18) BS02 dna N/A GO:0000786 ... P04908 N/A
    1052708 9r2p:H (4.18) BS01 dna N/A GO:0000786 ... P06899 N/A
    1052709 9r2p:K (4.18) BS01 dna N/A GO:0000122 ... P04637 N/A
    1052710 9r2p:L (4.18) BS01 dna N/A GO:0000122 ... P04637 N/A
    1052711 9r2p:L (4.18) BS02 dna N/A GO:0000122 ... P04637 N/A
    1052712 9r2p:M (4.18) BS01 dna N/A GO:0000122 ... P04637 N/A
    1052713 9r2p:M (4.18) BS02 dna N/A GO:0000122 ... P04637 N/A
    1052714 9r2q:A (3.2) BS01 dna N/A GO:0000786 ... P68431 N/A
    1052715 9r2q:A (3.2) BS02 dna N/A GO:0000786 ... P68431 N/A
    1052716 9r2q:B (3.2) BS01 dna N/A GO:0000781 ... P62805 N/A
    1052717 9r2q:B (3.2) BS02 dna N/A GO:0000781 ... P62805 N/A
    1052718 9r2q:C (3.2) BS01 dna N/A GO:0000786 ... P04908 N/A
    1052719 9r2q:C (3.2) BS02 dna N/A GO:0000786 ... P04908 N/A
    1052720 9r2q:D (3.2) BS01 dna N/A GO:0000786 ... P06899 N/A
    1052721 9r2q:E (3.2) BS01 dna N/A GO:0000786 ... P68431 N/A
    1052722 9r2q:E (3.2) BS02 dna N/A GO:0000786 ... P68431 N/A
    1052723 9r2q:F (3.2) BS01 dna N/A GO:0000781 ... P62805 N/A
    1052724 9r2q:F (3.2) BS02 dna N/A GO:0000781 ... P62805 N/A
    1052725 9r2q:G (3.2) BS01 dna N/A GO:0000786 ... P04908 N/A
    1052726 9r2q:G (3.2) BS02 dna N/A GO:0000786 ... P04908 N/A
    1052727 9r2q:H (3.2) BS01 dna N/A GO:0000786 ... P06899 N/A
    1052728 9r2q:H (3.2) BS02 dna N/A GO:0000786 ... P06899 N/A
    1052729 9r2q:K (3.2) BS01 dna N/A GO:0000122 ... P04637 N/A
    1052730 9r2q:L (3.2) BS01 dna N/A GO:0000122 ... P04637 N/A
    1052731 9r2q:L (3.2) BS02 dna N/A GO:0000122 ... P04637 N/A
    1052732 9r2q:M (3.2) BS01 dna N/A GO:0000122 ... P04637 N/A
    1052733 9r2q:M (3.2) BS02 dna N/A GO:0000122 ... P04637 N/A
    1052734 9r2q:N (3.2) BS01 dna N/A GO:0000122 ... P04637 N/A
    1052735 9r2v:A (2.49) BS01 CA N/A N/A N/A N/A
    1052736 9r2v:E (2.49) BS01 CA N/A N/A N/A N/A
    1052737 9r30:A (2.0) BS01 ZN N/A GO:0004089 ... A0A2R9BYT1 40833423
    1052738 9r30:A (2.0) BS02 A1JC2 N/A GO:0004089 ... A0A2R9BYT1 40833423
    1052739 9r30:B (2.0) BS01 ZN N/A GO:0004089 ... A0A2R9BYT1 40833423
    1052740 9r30:B (2.0) BS02 A1JC2 N/A GO:0004089 ... A0A2R9BYT1 40833423
    1052741 9r30:C (2.0) BS01 ZN N/A GO:0004089 ... A0A2R9BYT1 40833423
    1052742 9r30:C (2.0) BS02 A1JC2 N/A GO:0004089 ... A0A2R9BYT1 40833423
    1052743 9r30:D (2.0) BS01 ZN N/A GO:0004089 ... A0A2R9BYT1 40833423
    1052744 9r30:D (2.0) BS02 A1JC2 N/A GO:0004089 ... A0A2R9BYT1 40833423
    1052745 9r31:A (1.25) BS01 ZN N/A GO:0004089 ... O43570 40833423
    1052746 9r31:A (1.25) BS02 A1H89 N/A GO:0004089 ... O43570 40833423
    1052747 9r31:B (1.25) BS01 ZN N/A GO:0004089 ... O43570 40833423
    1052748 9r31:B (1.25) BS02 A1H89 N/A GO:0004089 ... O43570 40833423
    1052749 9r31:C (1.25) BS01 ZN N/A GO:0004089 ... O43570 40833423
    1052750 9r31:C (1.25) BS02 A1H89 N/A GO:0004089 ... O43570 40833423
    1052751 9r31:D (1.25) BS01 ZN N/A GO:0004089 ... O43570 40833423
    1052752 9r31:D (1.25) BS02 A1H89 N/A GO:0004089 ... O43570 40833423
    1052753 9r34:A (2.9) BS01 AGS N/A GO:0003723 ... Q83883 N/A
    1052754 9r34:B (2.9) BS01 AGS N/A GO:0003723 ... Q83883 N/A
    1052755 9r34:B (2.9) BS02 AGS N/A GO:0003723 ... Q83883 N/A
    1052756 9r34:C (2.9) BS01 AGS N/A GO:0003723 ... Q83883 N/A
    1052757 9r34:C (2.9) BS02 AGS N/A GO:0003723 ... Q83883 N/A
    1052758 9r34:D (2.9) BS01 AGS N/A GO:0003723 ... Q83883 N/A
    1052759 9r34:D (2.9) BS02 AGS N/A GO:0003723 ... Q83883 N/A
    1052760 9r34:E (2.9) BS01 AGS N/A GO:0003723 ... Q83883 N/A
    1052761 9r34:E (2.9) BS02 AGS N/A GO:0003723 ... Q83883 N/A
    1052762 9r34:F (2.9) BS01 AGS N/A GO:0003723 ... Q83883 N/A
    1052763 9r34:F (2.9) BS02 AGS N/A GO:0003723 ... Q83883 N/A
    1052764 9r35:B (2.7) BS01 dna N/A GO:0003677 ... A0A179RFM7 40577318
    1052765 9r35:B (2.7) BS02 dna N/A GO:0003677 ... A0A179RFM7 40577318
    1052766 9r35:C (2.7) BS01 dna N/A GO:0003677 ... A0A179RFM7 40577318
    1052767 9r35:C (2.7) BS02 dna N/A GO:0003677 ... A0A179RFM7 40577318
    1052768 9r35:F (2.7) BS01 dna N/A GO:0003677 ... A0A179RFM7 40577318
    1052769 9r35:H (2.7) BS01 dna N/A GO:0003677 ... A0A179RFM7 40577318
    1052770 9r35:H (2.7) BS02 dna N/A GO:0003677 ... A0A179RFM7 40577318
    1052771 9r35:I (2.7) BS01 dna N/A GO:0003677 ... A0A179RFM7 40577318
    1052772 9r35:I (2.7) BS02 dna N/A GO:0003677 ... A0A179RFM7 40577318
    1052773 9r35:N (2.7) BS01 dna N/A GO:0003677 ... A0A179RFM7 40577318
    1052774 9r35:N (2.7) BS02 dna N/A GO:0003677 ... A0A179RFM7 40577318
    1052775 9r35:O (2.7) BS01 dna N/A GO:0003677 ... A0A179RFM7 40577318
    1052776 9r35:R (2.7) BS01 dna N/A GO:0003677 ... A0A179RFM7 40577318
    1052777 9r35:T (2.7) BS01 dna N/A GO:0003677 ... A0A179RFM7 40577318
    1052778 9r35:T (2.7) BS02 dna N/A GO:0003677 ... A0A179RFM7 40577318
    1052779 9r35:U (2.7) BS01 dna N/A GO:0003677 ... A0A179RFM7 40577318
    1052780 9r3a:0 (2.86) BS01 rna N/A GO:0000027 ... P0A7N9 41558483
    1052781 9r3a:1 (2.86) BS01 rna N/A GO:0002181 ... P0A7P5 41558483
    1052782 9r3a:2 (2.86) BS01 rna N/A GO:0002181 ... P0A7Q1 41558483
    1052783 9r3a:3 (2.86) BS01 rna N/A GO:0002181 ... P0A7Q6 41558483
    1052784 9r3a:3 (2.86) BS02 ZN N/A GO:0002181 ... P0A7Q6 41558483
    1052785 9r3a:4 (2.86) BS01 rna N/A GO:0002181 ... P0A7M9 41558483
    1052786 9r3a:4 (2.86) BS02 ZN N/A GO:0002181 ... P0A7M9 41558483
    1052787 9r3a:6 (2.86) BS01 rna N/A N/A N/A 41558483
    1052788 9r3a:C (2.86) BS01 rna N/A GO:0000028 ... P0A7V3 41558483
    1052789 9r3a:D (2.86) BS01 rna N/A GO:0000028 ... P0A7V8 41558483
    1052790 9r3a:E (2.86) BS01 rna N/A GO:0000028 ... P0A7W1 41558483
    1052791 9r3a:F (2.86) BS01 rna N/A GO:0002181 ... P02358 41558483
    1052792 9r3a:G (2.86) BS01 rna N/A GO:0000028 ... P02359 41558483
    1052793 9r3a:H (2.86) BS01 rna N/A GO:0000028 ... P0A7W7 41558483
    1052794 9r3a:I (2.86) BS01 rna N/A GO:0002181 ... P0A7X3 41558483
    1052795 9r3a:J (2.86) BS01 rna N/A GO:0000049 ... P0A7R5 41558483
    1052796 9r3a:K (2.86) BS01 rna N/A GO:0002181 ... P0A7R9 41558483
    1052797 9r3a:L (2.86) BS01 rna N/A GO:0000049 ... P0A7S3 41558483
    1052798 9r3a:M (2.86) BS01 rna N/A GO:0000049 ... P0A7S9 41558483
    1052799 9r3a:M (2.86) BS02 rna N/A GO:0000049 ... P0A7S9 41558483
    1052800 9r3a:N (2.86) BS01 rna N/A GO:0000028 ... P0AG59 41558483

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).