SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1053401 9r7r:Aw (2.39) BS01 rna N/A N/A Q85197 41530503
    1053402 9r7r:Ay (2.39) BS01 rna N/A N/A Q85197 41530503
    1053403 9r7r:Ba (2.39) BS01 rna N/A N/A Q85197 41530503
    1053404 9r7r:Bc (2.39) BS01 rna N/A N/A Q85197 41530503
    1053405 9r7r:Be (2.39) BS01 rna N/A N/A Q85197 41530503
    1053406 9r7r:Bg (2.39) BS01 rna N/A N/A Q85197 41530503
    1053407 9r7r:Bg (2.39) BS02 rna N/A N/A Q85197 41530503
    1053408 9r7r:Bi (2.39) BS01 rna N/A N/A Q85197 41530503
    1053409 9r7r:Bi (2.39) BS02 rna N/A N/A Q85197 41530503
    1053410 9r7r:Bk (2.39) BS01 rna N/A N/A Q85197 41530503
    1053411 9r7r:Bk (2.39) BS02 rna N/A N/A Q85197 41530503
    1053412 9r7r:Bm (2.39) BS01 rna N/A N/A Q85197 41530503
    1053413 9r7r:Bo (2.39) BS01 rna N/A N/A Q85197 41530503
    1053414 9r7r:Bq (2.39) BS01 rna N/A N/A Q85197 41530503
    1053415 9r7r:Bs (2.39) BS01 rna N/A N/A Q85197 41530503
    1053416 9r7r:Bu (2.39) BS01 rna N/A N/A Q85197 41530503
    1053417 9r7r:Bw (2.39) BS01 rna N/A N/A Q85197 41530503
    1053418 9r7r:By (2.39) BS01 rna N/A N/A Q85197 41530503
    1053419 9r7r:By (2.39) BS02 rna N/A N/A Q85197 41530503
    1053420 9r7r:Ca (2.39) BS01 rna N/A N/A Q85197 41530503
    1053421 9r7r:Cc (2.39) BS01 rna N/A N/A Q85197 41530503
    1053422 9r7r:Ce (2.39) BS01 rna N/A N/A Q85197 41530503
    1053423 9r7r:Cg (2.39) BS01 rna N/A N/A Q85197 41530503
    1053424 9r7r:Ci (2.39) BS01 rna N/A N/A Q85197 41530503
    1053425 9r7r:Ck (2.39) BS01 rna N/A N/A Q85197 41530503
    1053426 9r7r:Cm (2.39) BS01 rna N/A N/A Q85197 41530503
    1053427 9r7r:Co (2.39) BS01 rna N/A N/A Q85197 41530503
    1053428 9r7r:Co (2.39) BS02 rna N/A N/A Q85197 41530503
    1053429 9r7r:Cq (2.39) BS01 rna N/A N/A Q85197 41530503
    1053430 9r7r:Cq (2.39) BS02 rna N/A N/A Q85197 41530503
    1053431 9r7r:Cs (2.39) BS01 rna N/A N/A Q85197 41530503
    1053432 9r7r:Cs (2.39) BS02 rna N/A N/A Q85197 41530503
    1053433 9r7s:Aa (2.54) BS01 rna N/A N/A Q85197 41530503
    1053434 9r7s:Ac (2.54) BS01 rna N/A N/A Q85197 41530503
    1053435 9r7s:Ac (2.54) BS02 rna N/A N/A Q85197 41530503
    1053436 9r7s:Ae (2.54) BS01 rna N/A N/A Q85197 41530503
    1053437 9r7s:Ag (2.54) BS01 rna N/A N/A Q85197 41530503
    1053438 9r7s:Ag (2.54) BS02 rna N/A N/A Q85197 41530503
    1053439 9r7s:Ai (2.54) BS01 rna N/A N/A Q85197 41530503
    1053440 9r7s:Ai (2.54) BS02 rna N/A N/A Q85197 41530503
    1053441 9r7s:Ak (2.54) BS01 rna N/A N/A Q85197 41530503
    1053442 9r7s:Am (2.54) BS01 rna N/A N/A Q85197 41530503
    1053443 9r7s:Ao (2.54) BS01 rna N/A N/A Q85197 41530503
    1053444 9r7s:Aq (2.54) BS01 rna N/A N/A Q85197 41530503
    1053445 9r7s:As (2.54) BS01 rna N/A N/A Q85197 41530503
    1053446 9r7s:Au (2.54) BS01 rna N/A N/A Q85197 41530503
    1053447 9r7s:Aw (2.54) BS01 rna N/A N/A Q85197 41530503
    1053448 9r7s:Ay (2.54) BS01 rna N/A N/A Q85197 41530503
    1053449 9r7s:Ba (2.54) BS01 rna N/A N/A Q85197 41530503
    1053450 9r7s:Bc (2.54) BS01 rna N/A N/A Q85197 41530503
    1053451 9r7s:Be (2.54) BS01 rna N/A N/A Q85197 41530503
    1053452 9r7s:Bg (2.54) BS01 rna N/A N/A Q85197 41530503
    1053453 9r7s:Bi (2.54) BS01 rna N/A N/A Q85197 41530503
    1053454 9r7s:Bk (2.54) BS01 rna N/A N/A Q85197 41530503
    1053455 9r7s:Bm (2.54) BS01 rna N/A N/A Q85197 41530503
    1053456 9r7s:Bo (2.54) BS01 rna N/A N/A Q85197 41530503
    1053457 9r7s:Bq (2.54) BS01 rna N/A N/A Q85197 41530503
    1053458 9r7s:Bs (2.54) BS01 rna N/A N/A Q85197 41530503
    1053459 9r7s:Bs (2.54) BS02 rna N/A N/A Q85197 41530503
    1053460 9r7s:Bu (2.54) BS01 rna N/A N/A Q85197 41530503
    1053461 9r7s:Bw (2.54) BS01 rna N/A N/A Q85197 41530503
    1053462 9r7s:By (2.54) BS01 rna N/A N/A Q85197 41530503
    1053463 9r7s:Ca (2.54) BS01 rna N/A N/A Q85197 41530503
    1053464 9r7s:Cc (2.54) BS01 rna N/A N/A Q85197 41530503
    1053465 9r7s:Ce (2.54) BS01 rna N/A N/A Q85197 41530503
    1053466 9r7s:Cg (2.54) BS01 rna N/A N/A Q85197 41530503
    1053467 9r7s:Ci (2.54) BS01 rna N/A N/A Q85197 41530503
    1053468 9r7s:Ck (2.54) BS01 rna N/A N/A Q85197 41530503
    1053469 9r7s:Cm (2.54) BS01 rna N/A N/A Q85197 41530503
    1053470 9r7s:Co (2.54) BS01 rna N/A N/A Q85197 41530503
    1053471 9r7s:Cq (2.54) BS01 rna N/A N/A Q85197 41530503
    1053472 9r7s:Cq (2.54) BS02 rna N/A N/A Q85197 41530503
    1053473 9r7s:Cs (2.54) BS01 rna N/A N/A Q85197 41530503
    1053474 9r7t:Aa (2.54) BS01 rna N/A N/A Q85197 41530503
    1053475 9r7t:Ac (2.54) BS01 rna N/A N/A Q85197 41530503
    1053476 9r7t:Ae (2.54) BS01 rna N/A N/A Q85197 41530503
    1053477 9r7t:Ag (2.54) BS01 rna N/A N/A Q85197 41530503
    1053478 9r7t:Ai (2.54) BS01 rna N/A N/A Q85197 41530503
    1053479 9r7t:Ak (2.54) BS01 rna N/A N/A Q85197 41530503
    1053480 9r7t:Am (2.54) BS01 rna N/A N/A Q85197 41530503
    1053481 9r7t:Ao (2.54) BS01 rna N/A N/A Q85197 41530503
    1053482 9r7t:Ao (2.54) BS02 rna N/A N/A Q85197 41530503
    1053483 9r7t:Aq (2.54) BS01 rna N/A N/A Q85197 41530503
    1053484 9r7t:Aq (2.54) BS02 rna N/A N/A Q85197 41530503
    1053485 9r7t:As (2.54) BS01 rna N/A N/A Q85197 41530503
    1053486 9r7t:Au (2.54) BS01 rna N/A N/A Q85197 41530503
    1053487 9r7t:Aw (2.54) BS01 rna N/A N/A Q85197 41530503
    1053488 9r7t:Ay (2.54) BS01 rna N/A N/A Q85197 41530503
    1053489 9r7t:Ay (2.54) BS02 rna N/A N/A Q85197 41530503
    1053490 9r7t:Ba (2.54) BS01 rna N/A N/A Q85197 41530503
    1053491 9r7t:Bc (2.54) BS01 rna N/A N/A Q85197 41530503
    1053492 9r7t:Be (2.54) BS01 rna N/A N/A Q85197 41530503
    1053493 9r7t:Bg (2.54) BS01 rna N/A N/A Q85197 41530503
    1053494 9r7t:Bi (2.54) BS01 rna N/A N/A Q85197 41530503
    1053495 9r7t:Bk (2.54) BS01 rna N/A N/A Q85197 41530503
    1053496 9r7t:Bm (2.54) BS01 rna N/A N/A Q85197 41530503
    1053497 9r7t:Bo (2.54) BS01 rna N/A N/A Q85197 41530503
    1053498 9r7t:Bq (2.54) BS01 rna N/A N/A Q85197 41530503
    1053499 9r7t:Bs (2.54) BS01 rna N/A N/A Q85197 41530503
    1053500 9r7t:Bu (2.54) BS01 rna N/A N/A Q85197 41530503
    1053501 9r7t:Bw (2.54) BS01 rna N/A N/A Q85197 41530503
    1053502 9r7t:Bw (2.54) BS02 rna N/A N/A Q85197 41530503
    1053503 9r7t:By (2.54) BS01 rna N/A N/A Q85197 41530503
    1053504 9r7t:Ca (2.54) BS01 rna N/A N/A Q85197 41530503
    1053505 9r7t:Cc (2.54) BS01 rna N/A N/A Q85197 41530503
    1053506 9r7t:Ce (2.54) BS01 rna N/A N/A Q85197 41530503
    1053507 9r7t:Cg (2.54) BS01 rna N/A N/A Q85197 41530503
    1053508 9r7t:Cg (2.54) BS02 rna N/A N/A Q85197 41530503
    1053509 9r7t:Ci (2.54) BS01 rna N/A N/A Q85197 41530503
    1053510 9r7t:Ck (2.54) BS01 rna N/A N/A Q85197 41530503
    1053511 9r7t:Ck (2.54) BS02 rna N/A N/A Q85197 41530503
    1053512 9r7t:Cm (2.54) BS01 rna N/A N/A Q85197 41530503
    1053513 9r7t:Co (2.54) BS01 rna N/A N/A Q85197 41530503
    1053514 9r7t:Cq (2.54) BS01 rna N/A N/A Q85197 41530503
    1053515 9r7t:Cs (2.54) BS01 rna N/A N/A Q85197 41530503
    1053516 9r7v:Aa (3.06) BS01 rna N/A GO:0019028 ... O11986 41530503
    1053517 9r7v:Aa (3.06) BS02 rna N/A GO:0019028 ... O11986 41530503
    1053518 9r7v:Ac (3.06) BS01 rna N/A GO:0019028 ... O11986 41530503
    1053519 9r7v:Ae (3.06) BS01 rna N/A GO:0019028 ... O11986 41530503
    1053520 9r7v:Ag (3.06) BS01 rna N/A GO:0019028 ... O11986 41530503
    1053521 9r7v:Ai (3.06) BS01 rna N/A GO:0019028 ... O11986 41530503
    1053522 9r7v:Ak (3.06) BS01 rna N/A GO:0019028 ... O11986 41530503
    1053523 9r7v:Am (3.06) BS01 rna N/A GO:0019028 ... O11986 41530503
    1053524 9r7v:Ao (3.06) BS01 rna N/A GO:0019028 ... O11986 41530503
    1053525 9r7v:Aq (3.06) BS01 rna N/A GO:0019028 ... O11986 41530503
    1053526 9r7v:As (3.06) BS01 rna N/A GO:0019028 ... O11986 41530503
    1053527 9r7v:As (3.06) BS02 rna N/A GO:0019028 ... O11986 41530503
    1053528 9r7v:Au (3.06) BS01 rna N/A GO:0019028 ... O11986 41530503
    1053529 9r7v:Aw (3.06) BS01 rna N/A GO:0019028 ... O11986 41530503
    1053530 9r7v:Ay (3.06) BS01 rna N/A GO:0019028 ... O11986 41530503
    1053531 9r7v:Ay (3.06) BS02 rna N/A GO:0019028 ... O11986 41530503
    1053532 9r7v:Ba (3.06) BS01 rna N/A GO:0019028 ... O11986 41530503
    1053533 9r7v:Bc (3.06) BS01 rna N/A GO:0019028 ... O11986 41530503
    1053534 9r7v:Be (3.06) BS01 rna N/A GO:0019028 ... O11986 41530503
    1053535 9r7v:Bg (3.06) BS01 rna N/A GO:0019028 ... O11986 41530503
    1053536 9r7v:Bg (3.06) BS02 rna N/A GO:0019028 ... O11986 41530503
    1053537 9r7v:Bi (3.06) BS01 rna N/A GO:0019028 ... O11986 41530503
    1053538 9r7v:Bi (3.06) BS02 rna N/A GO:0019028 ... O11986 41530503
    1053539 9r7v:Bk (3.06) BS01 rna N/A GO:0019028 ... O11986 41530503
    1053540 9r7v:Bm (3.06) BS01 rna N/A GO:0019028 ... O11986 41530503
    1053541 9r7v:Bo (3.06) BS01 rna N/A GO:0019028 ... O11986 41530503
    1053542 9r7v:Bq (3.06) BS01 rna N/A GO:0019028 ... O11986 41530503
    1053543 9r7v:Bs (3.06) BS01 rna N/A GO:0019028 ... O11986 41530503
    1053544 9r7v:Bu (3.06) BS01 rna N/A GO:0019028 ... O11986 41530503
    1053545 9r7v:Bw (3.06) BS01 rna N/A GO:0019028 ... O11986 41530503
    1053546 9r7v:By (3.06) BS01 rna N/A GO:0019028 ... O11986 41530503
    1053547 9r7v:Ca (3.06) BS01 rna N/A GO:0019028 ... O11986 41530503
    1053548 9r7v:Cc (3.06) BS01 rna N/A GO:0019028 ... O11986 41530503
    1053549 9r7v:Ce (3.06) BS01 rna N/A GO:0019028 ... O11986 41530503
    1053550 9r7v:Cg (3.06) BS01 rna N/A GO:0019028 ... O11986 41530503
    1053551 9r7v:Ci (3.06) BS01 rna N/A GO:0019028 ... O11986 41530503
    1053552 9r7v:Ci (3.06) BS02 rna N/A GO:0019028 ... O11986 41530503
    1053553 9r7v:Ck (3.06) BS01 rna N/A GO:0019028 ... O11986 41530503
    1053554 9r7v:Cm (3.06) BS01 rna N/A GO:0019028 ... O11986 41530503
    1053555 9r7v:Co (3.06) BS01 rna N/A GO:0019028 ... O11986 41530503
    1053556 9r7v:Cq (3.06) BS01 rna N/A GO:0019028 ... O11986 41530503
    1053557 9r7v:Cs (3.06) BS01 rna N/A GO:0019028 ... O11986 41530503
    1053558 9r81:Aa (2.33) BS01 rna N/A GO:0019028 ... O11986 41530503
    1053559 9r81:Ac (2.33) BS01 rna N/A GO:0019028 ... O11986 41530503
    1053560 9r81:Ae (2.33) BS01 rna N/A GO:0019028 ... O11986 41530503
    1053561 9r81:Ag (2.33) BS01 rna N/A GO:0019028 ... O11986 41530503
    1053562 9r81:Ai (2.33) BS01 rna N/A GO:0019028 ... O11986 41530503
    1053563 9r81:Ai (2.33) BS02 rna N/A GO:0019028 ... O11986 41530503
    1053564 9r81:Ak (2.33) BS01 rna N/A GO:0019028 ... O11986 41530503
    1053565 9r81:Ak (2.33) BS02 rna N/A GO:0019028 ... O11986 41530503
    1053566 9r81:Am (2.33) BS01 rna N/A GO:0019028 ... O11986 41530503
    1053567 9r81:Ao (2.33) BS01 rna N/A GO:0019028 ... O11986 41530503
    1053568 9r81:Ao (2.33) BS02 rna N/A GO:0019028 ... O11986 41530503
    1053569 9r81:Aq (2.33) BS01 rna N/A GO:0019028 ... O11986 41530503
    1053570 9r81:As (2.33) BS01 rna N/A GO:0019028 ... O11986 41530503
    1053571 9r81:As (2.33) BS02 rna N/A GO:0019028 ... O11986 41530503
    1053572 9r81:Au (2.33) BS01 rna N/A GO:0019028 ... O11986 41530503
    1053573 9r81:Au (2.33) BS02 rna N/A GO:0019028 ... O11986 41530503
    1053574 9r81:Aw (2.33) BS01 rna N/A GO:0019028 ... O11986 41530503
    1053575 9r81:Aw (2.33) BS02 rna N/A GO:0019028 ... O11986 41530503
    1053576 9r81:Ay (2.33) BS01 rna N/A GO:0019028 ... O11986 41530503
    1053577 9r81:Ba (2.33) BS01 rna N/A GO:0019028 ... O11986 41530503
    1053578 9r81:Bc (2.33) BS01 rna N/A GO:0019028 ... O11986 41530503
    1053579 9r81:Be (2.33) BS01 rna N/A GO:0019028 ... O11986 41530503
    1053580 9r81:Bg (2.33) BS01 rna N/A GO:0019028 ... O11986 41530503
    1053581 9r81:Bi (2.33) BS01 rna N/A GO:0019028 ... O11986 41530503
    1053582 9r81:Bk (2.33) BS01 rna N/A GO:0019028 ... O11986 41530503
    1053583 9r81:Bk (2.33) BS02 rna N/A GO:0019028 ... O11986 41530503
    1053584 9r81:Bm (2.33) BS01 rna N/A GO:0019028 ... O11986 41530503
    1053585 9r81:Bo (2.33) BS01 rna N/A GO:0019028 ... O11986 41530503
    1053586 9r81:Bo (2.33) BS02 rna N/A GO:0019028 ... O11986 41530503
    1053587 9r81:Bq (2.33) BS01 rna N/A GO:0019028 ... O11986 41530503
    1053588 9r81:Bq (2.33) BS02 rna N/A GO:0019028 ... O11986 41530503
    1053589 9r81:Bs (2.33) BS01 rna N/A GO:0019028 ... O11986 41530503
    1053590 9r81:Bs (2.33) BS02 rna N/A GO:0019028 ... O11986 41530503
    1053591 9r81:Bu (2.33) BS01 rna N/A GO:0019028 ... O11986 41530503
    1053592 9r81:Bw (2.33) BS01 rna N/A GO:0019028 ... O11986 41530503
    1053593 9r81:By (2.33) BS01 rna N/A GO:0019028 ... O11986 41530503
    1053594 9r81:Ca (2.33) BS01 rna N/A GO:0019028 ... O11986 41530503
    1053595 9r81:Cc (2.33) BS01 rna N/A GO:0019028 ... O11986 41530503
    1053596 9r81:Ce (2.33) BS01 rna N/A GO:0019028 ... O11986 41530503
    1053597 9r81:Cg (2.33) BS01 rna N/A GO:0019028 ... O11986 41530503
    1053598 9r81:Ci (2.33) BS01 rna N/A GO:0019028 ... O11986 41530503
    1053599 9r81:Ci (2.33) BS02 rna N/A GO:0019028 ... O11986 41530503
    1053600 9r81:Ck (2.33) BS01 rna N/A GO:0019028 ... O11986 41530503

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).