SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
  • Sort results by
    << < 5259 5260 5261 5262 5263 5264 5265 5266 5267 5268 5269 5270 5271 5272 5273 5274 5275 5276 5277 5278 5279 > >>
    Go to page

    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1053601 9r81:Ck (2.33) BS02 rna N/A GO:0019028 ... O11986 41530503
    1053602 9r81:Cm (2.33) BS01 rna N/A GO:0019028 ... O11986 41530503
    1053603 9r81:Cm (2.33) BS02 rna N/A GO:0019028 ... O11986 41530503
    1053604 9r81:Co (2.33) BS01 rna N/A GO:0019028 ... O11986 41530503
    1053605 9r81:Co (2.33) BS02 rna N/A GO:0019028 ... O11986 41530503
    1053606 9r81:Cq (2.33) BS01 rna N/A GO:0019028 ... O11986 41530503
    1053607 9r81:Cs (2.33) BS01 rna N/A GO:0019028 ... O11986 41530503
    1053608 9r85:A (3.04) BS01 AYE N/A GO:0004842 ... Q5T447 41690955
    1053609 9r8b:A (2.2) BS01 A1JCP N/A N/A P53350 41246821
    1053610 9r8b:B (2.2) BS01 A1JCP N/A N/A P53350 41246821
    1053611 9r8b:C (2.2) BS01 A1JCP N/A N/A N/A 41246821
    1053612 9r8b:D (2.2) BS01 A1JCP N/A N/A N/A 41246821
    1053613 9r8c:A (2.243) BS01 R78 N/A N/A P53350 41246821
    1053614 9r8c:B (2.243) BS01 R78 N/A N/A P53350 41246821
    1053615 9r8f:A (1.4) BS01 A1JDI N/A N/A N/A 41221109
    1053616 9r8o:C (3.3) BS01 ATP N/A GO:0003151 ... P11716 N/A
    1053617 9r8o:C (3.3) BS02 CFF N/A GO:0003151 ... P11716 N/A
    1053618 9r8o:C (3.3) BS03 CA N/A GO:0003151 ... P11716 N/A
    1053619 9r8o:C (3.3) BS04 ZN N/A GO:0003151 ... P11716 N/A
    1053620 9r8o:F (3.3) BS01 ATP N/A GO:0003151 ... P11716 N/A
    1053621 9r8o:F (3.3) BS02 CFF N/A GO:0003151 ... P11716 N/A
    1053622 9r8o:F (3.3) BS03 CA N/A GO:0003151 ... P11716 N/A
    1053623 9r8o:F (3.3) BS04 ZN N/A GO:0003151 ... P11716 N/A
    1053624 9r8o:I (3.3) BS01 ATP N/A GO:0003151 ... P11716 N/A
    1053625 9r8o:I (3.3) BS02 CFF N/A GO:0003151 ... P11716 N/A
    1053626 9r8o:I (3.3) BS03 CA N/A GO:0003151 ... P11716 N/A
    1053627 9r8o:I (3.3) BS04 ZN N/A GO:0003151 ... P11716 N/A
    1053628 9r8o:J (3.3) BS01 ATP N/A GO:0003151 ... P11716 N/A
    1053629 9r8o:J (3.3) BS02 CFF N/A GO:0003151 ... P11716 N/A
    1053630 9r8o:J (3.3) BS03 CA N/A GO:0003151 ... P11716 N/A
    1053631 9r8o:J (3.3) BS04 ZN N/A GO:0003151 ... P11716 N/A
    1053632 9r8q:H (1.8) BS01 peptide N/A GO:0004252 ... P00734 40498640
    1053633 9r8q:H (1.8) BS02 peptide N/A GO:0004252 ... P00734 40498640
    1053634 9r8q:H (1.8) BS03 A1JDJ N/A GO:0004252 ... P00734 40498640
    1053635 9r8r:A (2.04) BS01 CA N/A GO:0004252 ... P00742 40498640
    1053636 9r8r:A (2.04) BS02 A1JDJ N/A GO:0004252 ... P00742 40498640
    1053637 9r8u:A (3.3) BS01 MAN N/A GO:0019031 ... P08669 40897176
    1053638 9r8u:B (3.3) BS01 MAN N/A GO:0019031 ... P08669 40897176
    1053639 9r8x:A (2.0) BS01 ZN N/A GO:0004089 ... Q16790 40801814
    1053640 9r8x:A (2.0) BS02 A1IEN N/A GO:0004089 ... Q16790 40801814
    1053641 9r8x:B (2.0) BS01 ZN N/A GO:0004089 ... Q16790 40801814
    1053642 9r8x:B (2.0) BS02 A1IEN N/A GO:0004089 ... Q16790 40801814
    1053643 9r8x:C (2.0) BS01 ZN N/A GO:0004089 ... Q16790 40801814
    1053644 9r8x:C (2.0) BS02 A1IEN N/A GO:0004089 ... Q16790 40801814
    1053645 9r8x:D (2.0) BS01 ZN N/A GO:0004089 ... Q16790 40801814
    1053646 9r8x:D (2.0) BS02 A1IEN N/A GO:0004089 ... Q16790 40801814
    1053647 9r8y:A (1.95) BS01 ZN N/A GO:0004089 ... Q16790 40801814
    1053648 9r8y:A (1.95) BS02 A1JDL N/A GO:0004089 ... Q16790 40801814
    1053649 9r8y:B (1.95) BS01 ZN N/A GO:0004089 ... Q16790 40801814
    1053650 9r8y:B (1.95) BS02 A1JDL N/A GO:0004089 ... Q16790 40801814
    1053651 9r8y:C (1.95) BS01 ZN N/A GO:0004089 ... Q16790 40801814
    1053652 9r8y:C (1.95) BS02 A1JDL N/A GO:0004089 ... Q16790 40801814
    1053653 9r8y:D (1.95) BS01 ZN N/A GO:0004089 ... Q16790 40801814
    1053654 9r8y:D (1.95) BS02 A1JDL N/A GO:0004089 ... Q16790 40801814
    1053655 9r90:A (3.25) BS01 ADP N/A GO:0003878 ... P53396 40739358
    1053656 9r90:A (3.25) BS02 W1K N/A GO:0003878 ... P53396 40739358
    1053657 9r90:B (3.25) BS01 W1K N/A GO:0003878 ... P53396 40739358
    1053658 9r95:A (3.2) BS01 rna N/A GO:0000175 ... O00411 40712586
    1053659 9r95:A (3.2) BS02 dna N/A GO:0000175 ... O00411 40712586
    1053660 9r95:A (3.2) BS03 dna N/A GO:0000175 ... O00411 40712586
    1053661 9r95:B (3.2) BS01 dna N/A GO:0000154 ... Q9H5Q4 40712586
    1053662 9r95:C (3.2) BS01 dna N/A N/A Q00059 40712586
    1053663 9r95:C (3.2) BS02 dna N/A N/A Q00059 40712586
    1053664 9r96:A (3.1) BS01 dna N/A GO:0000175 ... O00411 40712586
    1053665 9r96:A (3.1) BS02 dna N/A GO:0000175 ... O00411 40712586
    1053666 9r96:A (3.1) BS03 rna N/A GO:0000175 ... O00411 40712586
    1053667 9r96:A (3.1) BS04 GTP N/A GO:0000175 ... O00411 40712586
    1053668 9r96:A (3.1) BS05 MG N/A GO:0000175 ... O00411 40712586
    1053669 9r96:B (3.1) BS01 dna N/A GO:0000154 ... Q9H5Q4 40712586
    1053670 9r96:B (3.1) BS02 dna N/A GO:0000154 ... Q9H5Q4 40712586
    1053671 9r96:C (3.1) BS01 dna N/A N/A Q00059 40712586
    1053672 9r96:C (3.1) BS02 dna N/A N/A Q00059 40712586
    1053673 9r97:A (3.3) BS01 MN N/A N/A O51564 41742401
    1053674 9r97:A (3.3) BS02 FE N/A N/A O51564 41742401
    1053675 9r97:A (3.3) BS03 AMP N/A N/A O51564 41742401
    1053676 9r97:B (3.3) BS01 MN N/A N/A O51564 41742401
    1053677 9r97:B (3.3) BS02 FE N/A N/A O51564 41742401
    1053678 9r97:C (3.3) BS01 MN N/A N/A O51564 41742401
    1053679 9r97:C (3.3) BS02 FE N/A N/A O51564 41742401
    1053680 9r97:C (3.3) BS03 AMP N/A N/A O51564 41742401
    1053681 9r97:D (3.3) BS01 MN N/A N/A O51564 41742401
    1053682 9r97:D (3.3) BS02 FE N/A N/A O51564 41742401
    1053683 9r97:E (3.3) BS01 MN N/A N/A O51564 41742401
    1053684 9r97:E (3.3) BS02 FE N/A N/A O51564 41742401
    1053685 9r97:E (3.3) BS03 AMP N/A N/A O51564 41742401
    1053686 9r97:F (3.3) BS01 MN N/A N/A O51564 41742401
    1053687 9r97:F (3.3) BS02 FE N/A N/A O51564 41742401
    1053688 9r97:G (3.3) BS01 MN N/A N/A O51564 41742401
    1053689 9r97:G (3.3) BS02 FE N/A N/A O51564 41742401
    1053690 9r97:G (3.3) BS03 AMP N/A N/A O51564 41742401
    1053691 9r97:H (3.3) BS01 MN N/A N/A O51564 41742401
    1053692 9r97:H (3.3) BS02 FE N/A N/A O51564 41742401
    1053693 9r98:A (3.3) BS01 MN N/A N/A O51564 41742401
    1053694 9r98:A (3.3) BS02 FE N/A N/A O51564 41742401
    1053695 9r98:A (3.3) BS03 AMP N/A N/A O51564 41742401
    1053696 9r98:B (3.3) BS01 MN N/A N/A O51564 41742401
    1053697 9r98:B (3.3) BS02 FE N/A N/A O51564 41742401
    1053698 9r98:C (3.3) BS01 MN N/A N/A O51564 41742401
    1053699 9r98:C (3.3) BS02 FE N/A N/A O51564 41742401
    1053700 9r98:C (3.3) BS03 AMP N/A N/A O51564 41742401
    1053701 9r98:D (3.3) BS01 MN N/A N/A O51564 41742401
    1053702 9r98:D (3.3) BS02 FE N/A N/A O51564 41742401
    1053703 9r98:E (3.3) BS01 MN N/A N/A O51564 41742401
    1053704 9r98:E (3.3) BS02 FE N/A N/A O51564 41742401
    1053705 9r98:E (3.3) BS03 AMP N/A N/A O51564 41742401
    1053706 9r98:F (3.3) BS01 MN N/A N/A O51564 41742401
    1053707 9r98:F (3.3) BS02 FE N/A N/A O51564 41742401
    1053708 9r98:G (3.3) BS01 MN N/A N/A O51564 41742401
    1053709 9r98:G (3.3) BS02 FE N/A N/A O51564 41742401
    1053710 9r98:G (3.3) BS03 AMP N/A N/A O51564 41742401
    1053711 9r98:H (3.3) BS01 MN N/A N/A O51564 41742401
    1053712 9r98:H (3.3) BS02 FE N/A N/A O51564 41742401
    1053713 9r99:A (3.0) BS01 MN N/A N/A O51564 41742401
    1053714 9r99:A (3.0) BS02 FE N/A N/A O51564 41742401
    1053715 9r99:A (3.0) BS03 A1JDM N/A N/A O51564 41742401
    1053716 9r99:B (3.0) BS01 MN N/A N/A O51564 41742401
    1053717 9r99:B (3.0) BS02 FE N/A N/A O51564 41742401
    1053718 9r99:C (3.0) BS01 MN N/A N/A O51564 41742401
    1053719 9r99:C (3.0) BS02 FE N/A N/A O51564 41742401
    1053720 9r99:C (3.0) BS03 A1JDM N/A N/A O51564 41742401
    1053721 9r99:D (3.0) BS01 MN N/A N/A O51564 41742401
    1053722 9r99:D (3.0) BS02 FE N/A N/A O51564 41742401
    1053723 9r99:E (3.0) BS01 MN N/A N/A O51564 41742401
    1053724 9r99:E (3.0) BS02 FE N/A N/A O51564 41742401
    1053725 9r99:E (3.0) BS03 A1JDM N/A N/A O51564 41742401
    1053726 9r99:F (3.0) BS01 MN N/A N/A O51564 41742401
    1053727 9r99:F (3.0) BS02 FE N/A N/A O51564 41742401
    1053728 9r99:G (3.0) BS01 MN N/A N/A O51564 41742401
    1053729 9r99:G (3.0) BS02 FE N/A N/A O51564 41742401
    1053730 9r99:G (3.0) BS03 A1JDM N/A N/A O51564 41742401
    1053731 9r99:H (3.0) BS01 MN N/A N/A O51564 41742401
    1053732 9r99:H (3.0) BS02 FE N/A N/A O51564 41742401
    1053733 9r9d:A (2.16) BS01 FUC N/A GO:0001540 ... P06276 40750068
    1053734 9r9d:A (2.16) BS02 FUC N/A GO:0001540 ... P06276 40750068
    1053735 9r9d:A (2.16) BS03 A1JDP N/A GO:0001540 ... P06276 40750068
    1053736 9r9e:A (2.18) BS01 FUC N/A GO:0001540 ... P06276 40750068
    1053737 9r9e:A (2.18) BS02 FUC N/A GO:0001540 ... P06276 40750068
    1053738 9r9e:A (2.18) BS03 A1JDO N/A GO:0001540 ... P06276 40750068
    1053739 9r9g:A (1.88) BS01 Y9T N/A GO:0000287 ... Q9NWZ3 40972347
    1053740 9r9g:B (1.88) BS01 Y9T N/A GO:0000287 ... Q9NWZ3 40972347
    1053741 9r9g:C (1.88) BS01 Y9T N/A GO:0000287 ... Q9NWZ3 40972347
    1053742 9r9g:D (1.88) BS01 Y9T N/A GO:0000287 ... Q9NWZ3 40972347
    1053743 9r9j:A (2.39) BS01 A1JDR N/A GO:0000287 ... Q9NWZ3 40972347
    1053744 9r9j:B (2.39) BS01 A1JDR N/A GO:0000287 ... Q9NWZ3 40972347
    1053745 9r9j:C (2.39) BS01 A1JDR N/A GO:0000287 ... Q9NWZ3 40972347
    1053746 9r9j:D (2.39) BS01 A1JDR N/A GO:0000287 ... Q9NWZ3 40972347
    1053747 9r9k:A (1.87) BS01 A1JDQ N/A GO:0000287 ... Q9NWZ3 40972347
    1053748 9r9k:B (1.87) BS01 A1JDQ N/A GO:0000287 ... Q9NWZ3 40972347
    1053749 9r9k:C (1.87) BS01 A1JDQ N/A GO:0000287 ... Q9NWZ3 40972347
    1053750 9r9k:D (1.87) BS01 A1JDQ N/A GO:0000287 ... Q9NWZ3 40972347
    1053751 9r9l:A (2.95) BS01 GLC N/A N/A N/A 41536522
    1053752 9r9l:B (2.95) BS01 GLC N/A N/A N/A 41536522
    1053753 9r9l:C (2.95) BS01 GLC N/A N/A N/A 41536522
    1053754 9r9o:LA (2.9) BS01 rna N/A GO:0002181 ... P0CX45 41545346
    1053755 9r9o:LA (2.9) BS02 rna N/A GO:0002181 ... P0CX45 41545346
    1053756 9r9o:LB (2.9) BS01 rna N/A GO:0000027 ... P14126 41545346
    1053757 9r9o:LC (2.9) BS01 peptide N/A GO:0002181 ... P10664 41545346
    1053758 9r9o:LC (2.9) BS02 rna N/A GO:0002181 ... P10664 41545346
    1053759 9r9o:LC (2.9) BS03 rna N/A GO:0002181 ... P10664 41545346
    1053760 9r9o:LD (2.9) BS01 rna N/A GO:0000027 ... P26321 41545346
    1053761 9r9o:LD (2.9) BS02 rna N/A GO:0000027 ... P26321 41545346
    1053762 9r9o:LE (2.9) BS01 rna N/A GO:0000027 ... P05739 41545346
    1053763 9r9o:LF (2.9) BS01 rna N/A GO:0000463 ... P05737 41545346
    1053764 9r9o:LF (2.9) BS02 rna N/A GO:0000463 ... P05737 41545346
    1053765 9r9o:LG (2.9) BS01 rna N/A GO:0000470 ... P17076 41545346
    1053766 9r9o:LG (2.9) BS02 rna N/A GO:0000470 ... P17076 41545346
    1053767 9r9o:LH (2.9) BS01 rna N/A GO:0002181 ... P05738 41545346
    1053768 9r9o:LI (2.9) BS01 rna N/A GO:0000027 ... P41805 41545346
    1053769 9r9o:LI (2.9) BS02 rna N/A GO:0000027 ... P41805 41545346
    1053770 9r9o:LJ (2.9) BS01 rna N/A GO:0000027 ... P0C0W9 41545346
    1053771 9r9o:LJ (2.9) BS02 rna N/A GO:0000027 ... P0C0W9 41545346
    1053772 9r9o:LJ (2.9) BS03 rna N/A GO:0000027 ... P0C0W9 41545346
    1053773 9r9o:LL (2.9) BS01 rna N/A GO:0002181 ... Q12690 41545346
    1053774 9r9o:LM (2.9) BS01 rna N/A GO:0000027 ... P36105 41545346
    1053775 9r9o:LN (2.9) BS01 rna N/A GO:0000470 ... P05748 41545346
    1053776 9r9o:LN (2.9) BS02 rna N/A GO:0000470 ... P05748 41545346
    1053777 9r9o:LO (2.9) BS01 rna N/A GO:0000470 ... P26784 41545346
    1053778 9r9o:LP (2.9) BS01 rna N/A GO:0000448 ... P05740 41545346
    1053779 9r9o:LP (2.9) BS02 rna N/A GO:0000448 ... P05740 41545346
    1053780 9r9o:LQ (2.9) BS01 rna N/A GO:0002181 ... P0CX49 41545346
    1053781 9r9o:LR (2.9) BS01 rna N/A GO:0002181 ... P0CX82 41545346
    1053782 9r9o:LR (2.9) BS02 rna N/A GO:0002181 ... P0CX82 41545346
    1053783 9r9o:LS (2.9) BS01 rna N/A GO:0002181 ... P0CX23 41545346
    1053784 9r9o:LS (2.9) BS02 rna N/A GO:0002181 ... P0CX23 41545346
    1053785 9r9o:LT (2.9) BS01 rna N/A GO:0002181 ... Q02753 41545346
    1053786 9r9o:LT (2.9) BS02 rna N/A GO:0002181 ... Q02753 41545346
    1053787 9r9o:LU (2.9) BS01 rna N/A GO:0002181 ... P05749 41545346
    1053788 9r9o:LV (2.9) BS01 rna N/A GO:0002181 ... P0CX41 41545346
    1053789 9r9o:LW (2.9) BS01 rna N/A GO:0002181 ... P24000 41545346
    1053790 9r9o:LX (2.9) BS01 rna N/A GO:0000027 ... P04456 41545346
    1053791 9r9o:LX (2.9) BS02 rna N/A GO:0000027 ... P04456 41545346
    1053792 9r9o:LY (2.9) BS01 rna N/A GO:0002181 ... P05743 41545346
    1053793 9r9o:LY (2.9) BS02 rna N/A GO:0002181 ... P05743 41545346
    1053794 9r9o:LZ (2.9) BS01 rna N/A GO:0002181 ... P0C2H6 41545346
    1053795 9r9o:La (2.9) BS01 rna N/A GO:0002181 ... P02406 41545346
    1053796 9r9o:Lb (2.9) BS01 rna N/A GO:0002181 ... P05747 41545346
    1053797 9r9o:Lc (2.9) BS01 rna N/A GO:0002181 ... P14120 41545346
    1053798 9r9o:Ld (2.9) BS01 rna N/A GO:0002181 ... P0C2H8 41545346
    1053799 9r9o:Le (2.9) BS01 rna N/A GO:0002181 ... P38061 41545346
    1053800 9r9o:Lf (2.9) BS01 rna N/A GO:0000027 ... P05744 41545346

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).