SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1053801 9r9o:Lg (2.9) BS01 rna N/A GO:0002181 ... P87262 41545346
    1053802 9r9o:Lh (2.9) BS01 rna N/A GO:0000463 ... P0CX84 41545346
    1053803 9r9o:Lh (2.9) BS02 rna N/A GO:0000463 ... P0CX84 41545346
    1053804 9r9o:Li (2.9) BS01 rna N/A GO:0000470 ... P05745 41545346
    1053805 9r9o:Lj (2.9) BS01 rna N/A GO:0000448 ... P49166 41545346
    1053806 9r9o:Lj (2.9) BS02 rna N/A GO:0000448 ... P49166 41545346
    1053807 9r9o:Lk (2.9) BS01 rna N/A GO:0002181 ... P49167 41545346
    1053808 9r9o:Ll (2.9) BS01 rna N/A GO:0002181 ... P04650 41545346
    1053809 9r9o:Ll (2.9) BS02 rna N/A GO:0002181 ... P04650 41545346
    1053810 9r9o:Lo (2.9) BS01 rna N/A GO:0002181 ... P0CX27 41545346
    1053811 9r9o:Lp (2.9) BS01 rna N/A GO:0002181 ... P0CX25 41545346
    1053812 9r9o:SA (2.9) BS01 rna N/A GO:0000028 ... P32905 41545346
    1053813 9r9o:SB (2.9) BS01 rna N/A GO:0000462 ... P33442 41545346
    1053814 9r9o:SC (2.9) BS01 rna N/A GO:0000054 ... P25443 41545346
    1053815 9r9o:SD (2.9) BS01 rna N/A GO:0000054 ... P05750 41545346
    1053816 9r9o:SE (2.9) BS01 rna N/A GO:0002181 ... P0CX35 41545346
    1053817 9r9o:SF (2.9) BS01 rna N/A GO:0000054 ... P26783 41545346
    1053818 9r9o:SF (2.9) BS02 rna N/A GO:0000054 ... P26783 41545346
    1053819 9r9o:SG (2.9) BS01 rna N/A GO:0000462 ... P0CX37 41545346
    1053820 9r9o:SH (2.9) BS01 rna N/A GO:0002181 ... P26786 41545346
    1053821 9r9o:SI (2.9) BS01 rna N/A GO:0000462 ... P0CX39 41545346
    1053822 9r9o:SI (2.9) BS02 rna N/A GO:0000462 ... P0CX39 41545346
    1053823 9r9o:SJ (2.9) BS01 rna N/A GO:0000462 ... O13516 41545346
    1053824 9r9o:SK (2.9) BS01 rna N/A GO:0000054 ... Q08745 41545346
    1053825 9r9o:SL (2.9) BS01 rna N/A GO:0000028 ... P0CX47 41545346
    1053826 9r9o:SN (2.9) BS01 rna N/A GO:0000462 ... P05756 41545346
    1053827 9r9o:SO (2.9) BS01 rna N/A GO:0000028 ... P06367 41545346
    1053828 9r9o:SP (2.9) BS01 rna N/A GO:0000054 ... Q01855 41545346
    1053829 9r9o:SQ (2.9) BS01 rna N/A GO:0000462 ... P0CX51 41545346
    1053830 9r9o:SR (2.9) BS01 rna N/A GO:0000028 ... P14127 41545346
    1053831 9r9o:SS (2.9) BS01 rna N/A GO:0000054 ... P0CX55 41545346
    1053832 9r9o:ST (2.9) BS01 rna N/A GO:0000054 ... P07280 41545346
    1053833 9r9o:SU (2.9) BS01 rna N/A GO:0000462 ... P38701 41545346
    1053834 9r9o:SW (2.9) BS01 rna N/A GO:0002181 ... P0C0W1 41545346
    1053835 9r9o:SX (2.9) BS01 rna N/A GO:0000462 ... P0CX29 41545346
    1053836 9r9o:SY (2.9) BS01 rna N/A GO:0000462 ... P0CX31 41545346
    1053837 9r9o:SZ (2.9) BS01 rna N/A GO:0002181 ... Q3E792 41545346
    1053838 9r9o:Sa (2.9) BS01 rna N/A GO:0000054 ... P39938 41545346
    1053839 9r9o:Sb (2.9) BS01 rna N/A GO:0000028 ... P35997 41545346
    1053840 9r9o:Sc (2.9) BS01 rna N/A GO:0000028 ... P0C0X0 41545346
    1053841 9r9o:Sd (2.9) BS01 rna N/A GO:0002181 ... P41057 41545346
    1053842 9r9o:Se (2.9) BS01 rna N/A GO:0002181 ... P0CX33 41545346
    1053843 9r9o:Sg (2.9) BS01 rna N/A GO:0001965 ... P38011 41545346
    1053844 9r9p:LA (3.0) BS01 rna N/A GO:0002181 ... P0CX45 41545346
    1053845 9r9p:LA (3.0) BS02 rna N/A GO:0002181 ... P0CX45 41545346
    1053846 9r9p:LB (3.0) BS01 rna N/A GO:0000027 ... P14126 41545346
    1053847 9r9p:LC (3.0) BS01 peptide N/A GO:0002181 ... P10664 41545346
    1053848 9r9p:LC (3.0) BS02 rna N/A GO:0002181 ... P10664 41545346
    1053849 9r9p:LC (3.0) BS03 rna N/A GO:0002181 ... P10664 41545346
    1053850 9r9p:LD (3.0) BS01 rna N/A GO:0000027 ... P26321 41545346
    1053851 9r9p:LD (3.0) BS02 rna N/A GO:0000027 ... P26321 41545346
    1053852 9r9p:LE (3.0) BS01 rna N/A GO:0000027 ... P05739 41545346
    1053853 9r9p:LF (3.0) BS01 rna N/A GO:0000463 ... P05737 41545346
    1053854 9r9p:LF (3.0) BS02 rna N/A GO:0000463 ... P05737 41545346
    1053855 9r9p:LG (3.0) BS01 rna N/A GO:0000470 ... P17076 41545346
    1053856 9r9p:LG (3.0) BS02 rna N/A GO:0000470 ... P17076 41545346
    1053857 9r9p:LH (3.0) BS01 rna N/A GO:0002181 ... P05738 41545346
    1053858 9r9p:LI (3.0) BS01 rna N/A GO:0000027 ... P41805 41545346
    1053859 9r9p:LI (3.0) BS02 rna N/A GO:0000027 ... P41805 41545346
    1053860 9r9p:LJ (3.0) BS01 rna N/A GO:0000027 ... P0C0W9 41545346
    1053861 9r9p:LJ (3.0) BS02 rna N/A GO:0000027 ... P0C0W9 41545346
    1053862 9r9p:LJ (3.0) BS03 rna N/A GO:0000027 ... P0C0W9 41545346
    1053863 9r9p:LL (3.0) BS01 rna N/A GO:0002181 ... Q12690 41545346
    1053864 9r9p:LL (3.0) BS02 rna N/A GO:0002181 ... Q12690 41545346
    1053865 9r9p:LM (3.0) BS01 rna N/A GO:0000027 ... P36105 41545346
    1053866 9r9p:LN (3.0) BS01 rna N/A GO:0000470 ... P05748 41545346
    1053867 9r9p:LN (3.0) BS02 rna N/A GO:0000470 ... P05748 41545346
    1053868 9r9p:LO (3.0) BS01 rna N/A GO:0000470 ... P26784 41545346
    1053869 9r9p:LP (3.0) BS01 peptide N/A GO:0000448 ... P05740 41545346
    1053870 9r9p:LP (3.0) BS02 rna N/A GO:0000448 ... P05740 41545346
    1053871 9r9p:LP (3.0) BS03 rna N/A GO:0000448 ... P05740 41545346
    1053872 9r9p:LQ (3.0) BS01 rna N/A GO:0002181 ... P0CX49 41545346
    1053873 9r9p:LR (3.0) BS01 rna N/A GO:0002181 ... P0CX82 41545346
    1053874 9r9p:LR (3.0) BS02 rna N/A GO:0002181 ... P0CX82 41545346
    1053875 9r9p:LS (3.0) BS01 rna N/A GO:0002181 ... P0CX23 41545346
    1053876 9r9p:LS (3.0) BS02 rna N/A GO:0002181 ... P0CX23 41545346
    1053877 9r9p:LT (3.0) BS01 rna N/A GO:0002181 ... Q02753 41545346
    1053878 9r9p:LT (3.0) BS02 rna N/A GO:0002181 ... Q02753 41545346
    1053879 9r9p:LU (3.0) BS01 rna N/A GO:0002181 ... P05749 41545346
    1053880 9r9p:LV (3.0) BS01 rna N/A GO:0002181 ... P0CX41 41545346
    1053881 9r9p:LW (3.0) BS01 rna N/A GO:0002181 ... P24000 41545346
    1053882 9r9p:LX (3.0) BS01 rna N/A GO:0000027 ... P04456 41545346
    1053883 9r9p:LX (3.0) BS02 rna N/A GO:0000027 ... P04456 41545346
    1053884 9r9p:LY (3.0) BS01 rna N/A GO:0002181 ... P05743 41545346
    1053885 9r9p:LY (3.0) BS02 rna N/A GO:0002181 ... P05743 41545346
    1053886 9r9p:LZ (3.0) BS01 rna N/A GO:0002181 ... P0C2H6 41545346
    1053887 9r9p:La (3.0) BS01 rna N/A GO:0002181 ... P02406 41545346
    1053888 9r9p:Lb (3.0) BS01 rna N/A GO:0002181 ... P05747 41545346
    1053889 9r9p:Lc (3.0) BS01 rna N/A GO:0002181 ... P14120 41545346
    1053890 9r9p:Ld (3.0) BS01 rna N/A GO:0002181 ... P0C2H8 41545346
    1053891 9r9p:Le (3.0) BS01 rna N/A GO:0002181 ... P38061 41545346
    1053892 9r9p:Lf (3.0) BS01 rna N/A GO:0000027 ... P05744 41545346
    1053893 9r9p:Lg (3.0) BS01 rna N/A GO:0002181 ... P87262 41545346
    1053894 9r9p:Lh (3.0) BS01 rna N/A GO:0000463 ... P0CX84 41545346
    1053895 9r9p:Lh (3.0) BS02 rna N/A GO:0000463 ... P0CX84 41545346
    1053896 9r9p:Li (3.0) BS01 rna N/A GO:0000470 ... P05745 41545346
    1053897 9r9p:Lj (3.0) BS01 rna N/A GO:0000448 ... P49166 41545346
    1053898 9r9p:Lj (3.0) BS02 rna N/A GO:0000448 ... P49166 41545346
    1053899 9r9p:Lk (3.0) BS01 rna N/A GO:0002181 ... P49167 41545346
    1053900 9r9p:Ll (3.0) BS01 rna N/A GO:0002181 ... P04650 41545346
    1053901 9r9p:Ll (3.0) BS02 rna N/A GO:0002181 ... P04650 41545346
    1053902 9r9p:Lo (3.0) BS01 rna N/A GO:0002181 ... P0CX27 41545346
    1053903 9r9p:Lp (3.0) BS01 rna N/A GO:0002181 ... P0CX25 41545346
    1053904 9r9p:SA (3.0) BS01 rna N/A GO:0000028 ... P32905 41545346
    1053905 9r9p:SB (3.0) BS01 rna N/A GO:0000462 ... P33442 41545346
    1053906 9r9p:SC (3.0) BS01 rna N/A GO:0000054 ... P25443 41545346
    1053907 9r9p:SD (3.0) BS01 rna N/A GO:0000054 ... P05750 41545346
    1053908 9r9p:SE (3.0) BS01 rna N/A GO:0002181 ... P0CX35 41545346
    1053909 9r9p:SF (3.0) BS01 rna N/A GO:0000054 ... P26783 41545346
    1053910 9r9p:SG (3.0) BS01 rna N/A GO:0000462 ... P0CX37 41545346
    1053911 9r9p:SH (3.0) BS01 rna N/A GO:0002181 ... P26786 41545346
    1053912 9r9p:SI (3.0) BS01 rna N/A GO:0000462 ... P0CX39 41545346
    1053913 9r9p:SI (3.0) BS02 rna N/A GO:0000462 ... P0CX39 41545346
    1053914 9r9p:SJ (3.0) BS01 rna N/A GO:0000462 ... O13516 41545346
    1053915 9r9p:SK (3.0) BS01 rna N/A GO:0000054 ... Q08745 41545346
    1053916 9r9p:SL (3.0) BS01 rna N/A GO:0000028 ... P0CX47 41545346
    1053917 9r9p:SN (3.0) BS01 rna N/A GO:0000462 ... P05756 41545346
    1053918 9r9p:SO (3.0) BS01 rna N/A GO:0000028 ... P06367 41545346
    1053919 9r9p:SP (3.0) BS01 rna N/A GO:0000054 ... Q01855 41545346
    1053920 9r9p:SQ (3.0) BS01 rna N/A GO:0000462 ... P0CX51 41545346
    1053921 9r9p:SR (3.0) BS01 rna N/A GO:0000028 ... P14127 41545346
    1053922 9r9p:SS (3.0) BS01 rna N/A GO:0000054 ... P0CX55 41545346
    1053923 9r9p:ST (3.0) BS01 rna N/A GO:0000054 ... P07280 41545346
    1053924 9r9p:SU (3.0) BS01 rna N/A GO:0000462 ... P38701 41545346
    1053925 9r9p:SW (3.0) BS01 rna N/A GO:0002181 ... P0C0W1 41545346
    1053926 9r9p:SX (3.0) BS01 rna N/A GO:0000462 ... P0CX29 41545346
    1053927 9r9p:SY (3.0) BS01 rna N/A GO:0000462 ... P0CX31 41545346
    1053928 9r9p:SZ (3.0) BS01 rna N/A GO:0002181 ... Q3E792 41545346
    1053929 9r9p:Sa (3.0) BS01 rna N/A GO:0000054 ... P39938 41545346
    1053930 9r9p:Sb (3.0) BS01 rna N/A GO:0000028 ... P35997 41545346
    1053931 9r9p:Sc (3.0) BS01 rna N/A GO:0000028 ... P0C0X0 41545346
    1053932 9r9p:Sd (3.0) BS01 rna N/A GO:0002181 ... P41057 41545346
    1053933 9r9p:Se (3.0) BS01 rna N/A GO:0002181 ... P0CX33 41545346
    1053934 9r9p:Sg (3.0) BS01 rna N/A GO:0001965 ... P38011 41545346
    1053935 9r9x:Aa (3.64) BS01 rna N/A N/A Q01500 41530503
    1053936 9r9x:Ac (3.64) BS01 rna N/A N/A Q01500 41530503
    1053937 9r9x:Ae (3.64) BS01 rna N/A N/A Q01500 41530503
    1053938 9r9x:Ag (3.64) BS01 rna N/A N/A Q01500 41530503
    1053939 9r9x:Ai (3.64) BS01 rna N/A N/A Q01500 41530503
    1053940 9r9x:Ak (3.64) BS01 rna N/A N/A Q01500 41530503
    1053941 9r9x:Am (3.64) BS01 rna N/A N/A Q01500 41530503
    1053942 9r9x:Ao (3.64) BS01 rna N/A N/A Q01500 41530503
    1053943 9r9x:Aq (3.64) BS01 rna N/A N/A Q01500 41530503
    1053944 9r9x:As (3.64) BS01 rna N/A N/A Q01500 41530503
    1053945 9r9x:Au (3.64) BS01 rna N/A N/A Q01500 41530503
    1053946 9r9x:Aw (3.64) BS01 rna N/A N/A Q01500 41530503
    1053947 9r9x:Ay (3.64) BS01 rna N/A N/A Q01500 41530503
    1053948 9r9x:Ba (3.64) BS01 rna N/A N/A Q01500 41530503
    1053949 9r9x:Bc (3.64) BS01 rna N/A N/A Q01500 41530503
    1053950 9r9x:Be (3.64) BS01 rna N/A N/A Q01500 41530503
    1053951 9r9x:Bg (3.64) BS01 rna N/A N/A Q01500 41530503
    1053952 9r9x:Bi (3.64) BS01 rna N/A N/A Q01500 41530503
    1053953 9r9x:Bk (3.64) BS01 rna N/A N/A Q01500 41530503
    1053954 9r9x:Bm (3.64) BS01 rna N/A N/A Q01500 41530503
    1053955 9r9x:Bo (3.64) BS01 rna N/A N/A Q01500 41530503
    1053956 9r9x:Bq (3.64) BS01 rna N/A N/A Q01500 41530503
    1053957 9r9x:Bs (3.64) BS01 rna N/A N/A Q01500 41530503
    1053958 9r9x:Bu (3.64) BS01 rna N/A N/A Q01500 41530503
    1053959 9r9x:Bw (3.64) BS01 rna N/A N/A Q01500 41530503
    1053960 9r9x:By (3.64) BS01 rna N/A N/A Q01500 41530503
    1053961 9r9x:Ca (3.64) BS01 rna N/A N/A Q01500 41530503
    1053962 9r9x:Cc (3.64) BS01 rna N/A N/A Q01500 41530503
    1053963 9r9x:Ce (3.64) BS01 rna N/A N/A Q01500 41530503
    1053964 9r9x:Cg (3.64) BS01 rna N/A N/A Q01500 41530503
    1053965 9r9x:Ci (3.64) BS01 rna N/A N/A Q01500 41530503
    1053966 9r9x:Ck (3.64) BS01 rna N/A N/A Q01500 41530503
    1053967 9r9x:Cm (3.64) BS01 rna N/A N/A Q01500 41530503
    1053968 9r9x:Co (3.64) BS01 rna N/A N/A Q01500 41530503
    1053969 9r9x:Cq (3.64) BS01 rna N/A N/A Q01500 41530503
    1053970 9r9x:Cs (3.64) BS01 rna N/A N/A Q01500 41530503
    1053971 9r9z:Aa (3.4) BS01 rna N/A N/A Q82933 41530503
    1053972 9r9z:Ac (3.4) BS01 rna N/A N/A Q82933 41530503
    1053973 9r9z:Ae (3.4) BS01 rna N/A N/A Q82933 41530503
    1053974 9r9z:Ae (3.4) BS02 rna N/A N/A Q82933 41530503
    1053975 9r9z:Ag (3.4) BS01 rna N/A N/A Q82933 41530503
    1053976 9r9z:Ai (3.4) BS01 rna N/A N/A Q82933 41530503
    1053977 9r9z:Ak (3.4) BS01 rna N/A N/A Q82933 41530503
    1053978 9r9z:Am (3.4) BS01 rna N/A N/A Q82933 41530503
    1053979 9r9z:Am (3.4) BS02 rna N/A N/A Q82933 41530503
    1053980 9r9z:Ao (3.4) BS01 rna N/A N/A Q82933 41530503
    1053981 9r9z:Ao (3.4) BS02 rna N/A N/A Q82933 41530503
    1053982 9r9z:Aq (3.4) BS01 rna N/A N/A Q82933 41530503
    1053983 9r9z:Aq (3.4) BS02 rna N/A N/A Q82933 41530503
    1053984 9r9z:As (3.4) BS01 rna N/A N/A Q82933 41530503
    1053985 9r9z:Au (3.4) BS01 rna N/A N/A Q82933 41530503
    1053986 9r9z:Au (3.4) BS02 rna N/A N/A Q82933 41530503
    1053987 9r9z:Aw (3.4) BS01 rna N/A N/A Q82933 41530503
    1053988 9r9z:Aw (3.4) BS02 rna N/A N/A Q82933 41530503
    1053989 9r9z:Ay (3.4) BS01 rna N/A N/A Q82933 41530503
    1053990 9r9z:Ba (3.4) BS01 rna N/A N/A Q82933 41530503
    1053991 9r9z:Bc (3.4) BS01 rna N/A N/A Q82933 41530503
    1053992 9r9z:Bc (3.4) BS02 rna N/A N/A Q82933 41530503
    1053993 9r9z:Be (3.4) BS01 rna N/A N/A Q82933 41530503
    1053994 9r9z:Be (3.4) BS02 rna N/A N/A Q82933 41530503
    1053995 9r9z:Bg (3.4) BS01 rna N/A N/A Q82933 41530503
    1053996 9r9z:Bg (3.4) BS02 rna N/A N/A Q82933 41530503
    1053997 9r9z:Bi (3.4) BS01 rna N/A N/A Q82933 41530503
    1053998 9r9z:Bi (3.4) BS02 rna N/A N/A Q82933 41530503
    1053999 9r9z:Bk (3.4) BS01 rna N/A N/A Q82933 41530503
    1054000 9r9z:Bm (3.4) BS01 rna N/A N/A Q82933 41530503

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).