SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1054201 9rcj:B (2.45) BS04 CU N/A N/A A0AB73HHR8 41432273
    1054202 9rcj:B (2.45) BS05 CU N/A N/A A0AB73HHR8 41432273
    1054203 9rcj:B (2.45) BS06 CU N/A N/A A0AB73HHR8 41432273
    1054204 9rck:A (2.3) BS01 peptide N/A N/A A0AB73HHR8 41432273
    1054205 9rck:A (2.3) BS02 CU N/A N/A A0AB73HHR8 41432273
    1054206 9rck:A (2.3) BS03 CU N/A N/A A0AB73HHR8 41432273
    1054207 9rck:A (2.3) BS04 CU N/A N/A A0AB73HHR8 41432273
    1054208 9rck:A (2.3) BS05 CU N/A N/A A0AB73HHR8 41432273
    1054209 9rck:A (2.3) BS06 CU N/A N/A A0AB73HHR8 41432273
    1054210 9rck:A (2.3) BS07 CU N/A N/A A0AB73HHR8 41432273
    1054211 9rck:A (2.3) BS08 CU N/A N/A A0AB73HHR8 41432273
    1054212 9rck:A (2.3) BS09 CU N/A N/A A0AB73HHR8 41432273
    1054213 9rck:B (2.3) BS01 peptide N/A N/A A0AB73HHR8 41432273
    1054214 9rck:B (2.3) BS02 CU N/A N/A A0AB73HHR8 41432273
    1054215 9rck:B (2.3) BS03 CU N/A N/A A0AB73HHR8 41432273
    1054216 9rck:B (2.3) BS04 CU N/A N/A A0AB73HHR8 41432273
    1054217 9rck:B (2.3) BS05 CU N/A N/A A0AB73HHR8 41432273
    1054218 9rck:B (2.3) BS06 CU N/A N/A A0AB73HHR8 41432273
    1054219 9rck:B (2.3) BS07 CU N/A N/A A0AB73HHR8 41432273
    1054220 9rck:B (2.3) BS08 CU N/A N/A A0AB73HHR8 41432273
    1054221 9rck:B (2.3) BS09 CU N/A N/A A0AB73HHR8 41432273
    1054222 9rck:B (2.3) BS10 CU N/A N/A A0AB73HHR8 41432273
    1054223 9rcl:A (2.2) BS01 CU N/A N/A A0AB73HHR8 41432273
    1054224 9rcl:A (2.2) BS02 CU N/A N/A A0AB73HHR8 41432273
    1054225 9rcl:A (2.2) BS03 CU N/A N/A A0AB73HHR8 41432273
    1054226 9rcl:A (2.2) BS04 CU N/A N/A A0AB73HHR8 41432273
    1054227 9rcl:A (2.2) BS05 CU N/A N/A A0AB73HHR8 41432273
    1054228 9rcl:A (2.2) BS06 CU N/A N/A A0AB73HHR8 41432273
    1054229 9rcl:A (2.2) BS07 CU N/A N/A A0AB73HHR8 41432273
    1054230 9rcl:A (2.2) BS08 CU N/A N/A A0AB73HHR8 41432273
    1054231 9rcl:A (2.2) BS09 CU N/A N/A A0AB73HHR8 41432273
    1054232 9rcl:B (2.2) BS01 peptide N/A N/A A0AB73HHR8 41432273
    1054233 9rcl:B (2.2) BS02 CU N/A N/A A0AB73HHR8 41432273
    1054234 9rcl:B (2.2) BS03 CU N/A N/A A0AB73HHR8 41432273
    1054235 9rcl:B (2.2) BS04 CU N/A N/A A0AB73HHR8 41432273
    1054236 9rcl:B (2.2) BS05 CU N/A N/A A0AB73HHR8 41432273
    1054237 9rcl:B (2.2) BS06 CU N/A N/A A0AB73HHR8 41432273
    1054238 9rcl:B (2.2) BS07 CU N/A N/A A0AB73HHR8 41432273
    1054239 9rcl:B (2.2) BS08 CU N/A N/A A0AB73HHR8 41432273
    1054240 9rcl:B (2.2) BS09 CU N/A N/A A0AB73HHR8 41432273
    1054241 9rcl:B (2.2) BS10 CU N/A N/A A0AB73HHR8 41432273
    1054242 9rcm:A (2.0) BS01 CU N/A N/A N/A 41432273
    1054243 9rcm:A (2.0) BS02 CU N/A N/A N/A 41432273
    1054244 9rcm:A (2.0) BS03 CU N/A N/A N/A 41432273
    1054245 9rcm:A (2.0) BS04 CU N/A N/A N/A 41432273
    1054246 9rcn:A (2.5) BS01 peptide N/A N/A A0AB73HHR8 41432273
    1054247 9rcn:A (2.5) BS02 CU N/A N/A A0AB73HHR8 41432273
    1054248 9rcn:A (2.5) BS03 CU N/A N/A A0AB73HHR8 41432273
    1054249 9rcn:A (2.5) BS04 CU N/A N/A A0AB73HHR8 41432273
    1054250 9rcn:A (2.5) BS05 CU N/A N/A A0AB73HHR8 41432273
    1054251 9rcn:A (2.5) BS06 AG N/A N/A A0AB73HHR8 41432273
    1054252 9rcn:A (2.5) BS07 AG N/A N/A A0AB73HHR8 41432273
    1054253 9rcn:C (2.5) BS01 CU N/A N/A A0AB73HHR8 41432273
    1054254 9rcn:C (2.5) BS02 CU N/A N/A A0AB73HHR8 41432273
    1054255 9rcn:C (2.5) BS03 CU N/A N/A A0AB73HHR8 41432273
    1054256 9rcn:C (2.5) BS04 CU N/A N/A A0AB73HHR8 41432273
    1054257 9rcn:C (2.5) BS05 AG N/A N/A A0AB73HHR8 41432273
    1054258 9rcv:A (2.7) BS01 ATP N/A GO:0002250 ... Q03518 41481733
    1054259 9rcv:A (2.7) BS02 MG N/A GO:0002250 ... Q03518 41481733
    1054260 9rcv:E (2.7) BS01 ATP N/A GO:0002250 ... Q03519 41481733
    1054261 9rcv:E (2.7) BS02 ADP N/A GO:0002250 ... Q03519 41481733
    1054262 9rcv:E (2.7) BS03 MG N/A GO:0002250 ... Q03519 41481733
    1054263 9rcw:A (3.3) BS01 ZN N/A GO:0003151 ... P11716 N/A
    1054264 9rcw:A (3.3) BS02 ATP N/A GO:0003151 ... P11716 N/A
    1054265 9rcw:A (3.3) BS03 CFF N/A GO:0003151 ... P11716 N/A
    1054266 9rcw:A (3.3) BS04 CA N/A GO:0003151 ... P11716 N/A
    1054267 9rcw:C (3.3) BS01 ZN N/A GO:0003151 ... P11716 N/A
    1054268 9rcw:C (3.3) BS02 ATP N/A GO:0003151 ... P11716 N/A
    1054269 9rcw:C (3.3) BS03 CFF N/A GO:0003151 ... P11716 N/A
    1054270 9rcw:C (3.3) BS04 CA N/A GO:0003151 ... P11716 N/A
    1054271 9rcw:G (3.3) BS01 ZN N/A GO:0003151 ... P11716 N/A
    1054272 9rcw:G (3.3) BS02 ATP N/A GO:0003151 ... P11716 N/A
    1054273 9rcw:G (3.3) BS03 CFF N/A GO:0003151 ... P11716 N/A
    1054274 9rcw:G (3.3) BS04 CA N/A GO:0003151 ... P11716 N/A
    1054275 9rcw:J (3.3) BS01 ZN N/A GO:0003151 ... P11716 N/A
    1054276 9rcw:J (3.3) BS02 ATP N/A GO:0003151 ... P11716 N/A
    1054277 9rcw:J (3.3) BS03 CFF N/A GO:0003151 ... P11716 N/A
    1054278 9rcw:J (3.3) BS04 CA N/A GO:0003151 ... P11716 N/A
    1054279 9rd1:A (2.5) BS01 A1JHR N/A GO:0006857 ... P23843 41094137
    1054280 9rd1:B (2.5) BS01 A1JHR N/A GO:0006857 ... P23843 41094137
    1054281 9rd1:C (2.5) BS01 A1JHR N/A GO:0006857 ... P23843 41094137
    1054282 9rd1:D (2.5) BS01 A1JHR N/A GO:0006857 ... P23843 41094137
    1054283 9rd5:H (2.5) BS01 dna N/A N/A N/A N/A
    1054284 9rd5:H (2.5) BS02 dna N/A N/A N/A N/A
    1054285 9rda:A (1.748) BS01 A1JFB N/A GO:0004672 ... Q04771 41256990
    1054286 9rdi:A (2.105) BS01 A1JED N/A GO:0003677 ... P39748 40963090
    1054287 9rdi:A (2.105) BS02 TEW N/A GO:0003677 ... P39748 40963090
    1054288 9rdi:A (2.105) BS03 TEW N/A GO:0003677 ... P39748 40963090
    1054289 9rdi:A (2.105) BS04 TEW N/A GO:0003677 ... P39748 40963090
    1054290 9rdi:A (2.105) BS05 TEW N/A GO:0003677 ... P39748 40963090
    1054291 9rdi:A (2.105) BS06 MG N/A GO:0003677 ... P39748 40963090
    1054292 9rdi:A (2.105) BS07 TEW N/A GO:0003677 ... P39748 40963090
    1054293 9rdi:B (2.105) BS01 TEW N/A GO:0003677 ... P39748 40963090
    1054294 9rdi:B (2.105) BS02 A1JED N/A GO:0003677 ... P39748 40963090
    1054295 9rdi:B (2.105) BS03 TEW N/A GO:0003677 ... P39748 40963090
    1054296 9rdi:B (2.105) BS04 TEW N/A GO:0003677 ... P39748 40963090
    1054297 9rdi:B (2.105) BS05 TEW N/A GO:0003677 ... P39748 40963090
    1054298 9rdi:B (2.105) BS06 TEW N/A GO:0003677 ... P39748 40963090
    1054299 9rdi:B (2.105) BS07 TEW N/A GO:0003677 ... P39748 40963090
    1054300 9rdi:B (2.105) BS08 MG N/A GO:0003677 ... P39748 40963090
    1054301 9rdu:A (1.42) BS01 A1JE8 N/A GO:0000287 ... P25321 41430555
    1054302 9rdu:A (1.42) BS02 A1JE8 N/A GO:0000287 ... P25321 41430555
    1054303 9rdu:A (1.42) BS03 A1JE8 N/A GO:0000287 ... P25321 41430555
    1054304 9rdv:A (1.32) BS01 A1JE7 N/A GO:0000287 ... P25321 41430555
    1054305 9rdv:A (1.32) BS02 A1JE7 N/A GO:0000287 ... P25321 41430555
    1054306 9rdw:A (1.44) BS01 A1JE6 N/A GO:0000287 ... P25321 41430555
    1054307 9rdw:A (1.44) BS02 A1JE6 N/A GO:0000287 ... P25321 41430555
    1054308 9rdx:A (1.5) BS01 A1JE5 N/A GO:0000287 ... P25321 41430555
    1054309 9rdy:A (1.5) BS01 A1JE4 N/A GO:0000287 ... P25321 41430555
    1054310 9rdz:A (1.64) BS01 A1JE9 N/A GO:0000287 ... P25321 41430555
    1054311 9rdz:A (1.64) BS02 A1JE9 N/A GO:0000287 ... P25321 41430555
    1054312 9re0:A (1.58) BS01 A1JE3 N/A GO:0000287 ... P25321 41430555
    1054313 9re0:A (1.58) BS02 A1JE3 N/A GO:0000287 ... P25321 41430555
    1054314 9re1:A (1.41) BS01 A1JE2 N/A GO:0000287 ... P25321 41430555
    1054315 9re3:A (1.57) BS01 A1JE0 N/A GO:0000287 ... P25321 41430555
    1054316 9re3:A (1.57) BS02 A1JE0 N/A GO:0000287 ... P25321 41430555
    1054317 9re4:A (1.47) BS01 A1JEZ N/A GO:0000287 ... P25321 41430555
    1054318 9re4:A (1.47) BS02 A1JEZ N/A GO:0000287 ... P25321 41430555
    1054319 9re5:A (1.7) BS01 A1JEY N/A GO:0000287 ... P25321 41430555
    1054320 9re5:A (1.7) BS02 A1JEY N/A GO:0000287 ... P25321 41430555
    1054321 9re6:A (1.45) BS01 A1JEX N/A GO:0000287 ... P25321 41430555
    1054322 9re7:A (1.46) BS01 D6V N/A GO:0000287 ... P25321 41430555
    1054323 9re7:A (1.46) BS02 D6V N/A GO:0000287 ... P25321 41430555
    1054324 9re7:A (1.46) BS03 D6V N/A GO:0000287 ... P25321 41430555
    1054325 9re7:A (1.46) BS04 D6V N/A GO:0000287 ... P25321 41430555
    1054326 9re8:A (1.5) BS01 A1JEQ N/A GO:0000287 ... P25321 41430555
    1054327 9re8:A (1.5) BS02 A1JEQ N/A GO:0000287 ... P25321 41430555
    1054328 9re9:A (1.41) BS01 A1JER N/A GO:0000287 ... P25321 41430555
    1054329 9re9:A (1.41) BS02 A1JER N/A GO:0000287 ... P25321 41430555
    1054330 9rea:A (1.52) BS01 A1JES N/A GO:0000287 ... P25321 41430555
    1054331 9rea:A (1.52) BS02 A1JES N/A GO:0000287 ... P25321 41430555
    1054332 9reb:A (1.39) BS01 A1JET N/A GO:0000287 ... P25321 41430555
    1054333 9rec:A (1.2) BS01 A1JEU N/A GO:0000287 ... P25321 41430555
    1054334 9red:A (1.31) BS01 A1JEV N/A GO:0000287 ... P25321 41430555
    1054335 9red:A (1.31) BS02 A1JEV N/A GO:0000287 ... P25321 41430555
    1054336 9ree:A (1.34) BS01 A1JEW N/A GO:0000287 ... P25321 41430555
    1054337 9ree:A (1.34) BS02 A1JEW N/A GO:0000287 ... P25321 41430555
    1054338 9ref:A (1.42) BS01 D8J N/A GO:0000287 ... P25321 41430555
    1054339 9reg:A (1.35) BS01 A1JEP N/A GO:0000287 ... P25321 41430555
    1054340 9reg:A (1.35) BS02 A1JEP N/A GO:0000287 ... P25321 41430555
    1054341 9reh:A (1.33) BS01 A1JEO N/A GO:0000287 ... P25321 41430555
    1054342 9rei:A (1.42) BS01 A1JEN N/A GO:0000287 ... P25321 41430555
    1054343 9rei:A (1.42) BS02 A1JEN N/A GO:0000287 ... P25321 41430555
    1054344 9rej:A (1.4) BS01 A1JEM N/A GO:0000287 ... P25321 41430555
    1054345 9rej:A (1.4) BS02 A1JEM N/A GO:0000287 ... P25321 41430555
    1054346 9rej:A (1.4) BS03 A1JEM N/A GO:0000287 ... P25321 41430555
    1054347 9rek:A (1.38) BS01 D8P N/A GO:0000287 ... P25321 41430555
    1054348 9rek:A (1.38) BS02 D8P N/A GO:0000287 ... P25321 41430555
    1054349 9rek:A (1.38) BS03 D8P N/A GO:0000287 ... P25321 41430555
    1054350 9rek:A (1.38) BS04 D8P N/A GO:0000287 ... P25321 41430555
    1054351 9rel:A (1.42) BS01 D8V N/A GO:0000287 ... P25321 41430555
    1054352 9ren:A (1.38) BS01 A1JEK N/A GO:0000287 ... P25321 41430555
    1054353 9reo:A (1.45) BS01 A1JEJ N/A GO:0000287 ... P25321 41430555
    1054354 9reo:A (1.45) BS02 A1JEJ N/A GO:0000287 ... P25321 41430555
    1054355 9reo:A (1.45) BS03 A1JEJ N/A GO:0000287 ... P25321 41430555
    1054356 9reo:A (1.45) BS04 A1JEJ N/A GO:0000287 ... P25321 41430555
    1054357 9reo:A (1.45) BS05 A1JEJ N/A GO:0000287 ... P25321 41430555
    1054358 9rep:A (1.44) BS01 A1JFA N/A GO:0000287 ... P25321 41430555
    1054359 9rep:A (1.44) BS02 A1JFA N/A GO:0000287 ... P25321 41430555
    1054360 9rep:A (1.44) BS03 A1JFA N/A GO:0000287 ... P25321 41430555
    1054361 9req:A (1.5) BS01 A1JEI N/A GO:0000287 ... P25321 41430555
    1054362 9rer:A (1.45) BS01 A1JEH N/A GO:0000287 ... P25321 41430555
    1054363 9res:A (1.5) BS01 A1JEG N/A GO:0000287 ... P25321 41430555
    1054364 9ret:A (1.75) BS01 A1JEF N/A GO:0000287 ... P25321 41430555
    1054365 9rf2:A (1.6) BS01 8KE N/A GO:0004622 ... O07427 N/A
    1054366 9rf2:A (1.6) BS02 I3F N/A GO:0004622 ... O07427 N/A
    1054367 9rf5:A (1.8) BS01 8D5 N/A GO:0004622 ... O07427 N/A
    1054368 9rfb:A (1.854) BS01 peptide N/A GO:0000242 ... P63000 41309611
    1054369 9rfb:A (1.854) BS02 GNP N/A GO:0000242 ... P63000 41309611
    1054370 9rfb:A (1.854) BS03 MG N/A GO:0000242 ... P63000 41309611
    1054371 9rfb:B (1.854) BS01 peptide N/A GO:0000242 ... P63000 41309611
    1054372 9rfb:B (1.854) BS02 GNP N/A GO:0000242 ... P63000 41309611
    1054373 9rfb:B (1.854) BS03 MG N/A GO:0000242 ... P63000 41309611
    1054374 9rfd:A (1.85) BS01 MG N/A GO:0000287 ... Q9NX46 40952342
    1054375 9rfd:A (1.85) BS02 ADP N/A GO:0000287 ... Q9NX46 40952342
    1054376 9rfd:B (1.85) BS01 MG N/A GO:0000287 ... Q9NX46 40952342
    1054377 9rfd:B (1.85) BS02 ADP N/A GO:0000287 ... Q9NX46 40952342
    1054378 9rfe:A (1.85) BS01 MG N/A GO:0000287 ... Q9NX46 40952342
    1054379 9rfe:A (1.85) BS02 A1JFJ N/A GO:0000287 ... Q9NX46 40952342
    1054380 9rfe:B (1.85) BS01 MG N/A GO:0000287 ... Q9NX46 40952342
    1054381 9rfe:B (1.85) BS02 A1JFJ N/A GO:0000287 ... Q9NX46 40952342
    1054382 9rff:A (1.248) BS01 GNP N/A GO:0000242 ... P63000
    Q7Z6J0
    41309611
    1054383 9rff:A (1.248) BS02 MG N/A GO:0000242 ... P63000
    Q7Z6J0
    41309611
    1054384 9rfu:B (3.3) BS01 L9Q N/A N/A P9WJS7 40667120
    1054385 9rfx:A (1.18) BS01 A1JFU N/A GO:0004190 ... P11838 41132859
    1054386 9rg6:A (1.07) BS01 A1JFV N/A GO:0004190 ... P11838 41132859
    1054387 9rg8:A (2.07) BS01 A1JFX N/A GO:0009159 ... O43598 41183227
    1054388 9rg8:B (2.07) BS01 A1JFX N/A GO:0009159 ... O43598 41183227
    1054389 9rga:B (1.38) BS01 A1JFZ N/A GO:0003723 ... Q32ZE1 41132859
    1054390 9rgb:B (3.2) BS01 L9Q N/A GO:0005576 ... P9WJS7 40667120
    1054391 9rgb:C (3.2) BS01 L9Q N/A GO:0005576 ... P9WJS7 40667120
    1054392 9rgb:D (3.2) BS01 L9Q N/A GO:0006091 ... P42212
    P9WJV1
    40667120
    1054393 9rgf:B (1.6) BS01 A1JF3 N/A GO:0003723 ... Q32ZE1 41132859
    1054394 9rgf:D (1.6) BS01 A1JF3 N/A GO:0003723 ... Q32ZE1 41132859
    1054395 9rgg:B (1.58) BS01 A1JF2 N/A GO:0003723 ... Q32ZE1 41132859
    1054396 9rgg:D (1.58) BS01 A1JF2 N/A GO:0003723 ... Q32ZE1 41132859
    1054397 9rgh:AAA (1.383) BS01 MG N/A GO:0004322 ... P02794 N/A
    1054398 9rgh:AAA (1.383) BS02 MG N/A GO:0004322 ... P02794 N/A
    1054399 9rgh:AAA (1.383) BS03 A1JGJ N/A GO:0004322 ... P02794 N/A
    1054400 9rgi:AAA (1.543) BS01 MG N/A GO:0004322 ... P02794 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).