SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1054801 9rkc:H (2.19) BS01 A1JHI N/A GO:0003924 ... P01116 41166656
    1054802 9rkc:H (2.19) BS02 GDP N/A GO:0003924 ... P01116 41166656
    1054803 9rke:C (2.83) BS01 X53 N/A N/A P40337 41166656
    1054804 9rke:D (2.83) BS01 X53 N/A GO:0003924 ... P01116 41166656
    1054805 9rke:D (2.83) BS02 MG N/A GO:0003924 ... P01116 41166656
    1054806 9rke:G (2.83) BS01 X53 N/A N/A P40337 41166656
    1054807 9rke:H (2.83) BS01 X53 N/A GO:0003924 ... P01116 41166656
    1054808 9rke:H (2.83) BS02 MG N/A GO:0003924 ... P01116 41166656
    1054809 9rkj:C (2.89) BS01 A1JH1 N/A N/A P40337 41166656
    1054810 9rkj:D (2.89) BS01 A1JH1 N/A GO:0003924 ... P01116 41166656
    1054811 9rkj:G (2.89) BS01 A1JH1 N/A N/A P40337 41166656
    1054812 9rkj:H (2.89) BS01 A1JH1 N/A GO:0003924 ... P01116 41166656
    1054813 9rkn:C (2.85) BS01 A1JHI N/A N/A P40337 41166656
    1054814 9rkn:D (2.85) BS01 A1JHI N/A GO:0003924 ... P01116 41166656
    1054815 9rkn:G (2.85) BS01 A1JHI N/A N/A P40337 41166656
    1054816 9rkn:H (2.85) BS01 A1JHI N/A GO:0003924 ... P01116 41166656
    1054817 9rko:A (1.89) BS01 A1JHV N/A N/A Q8VBX4 41261040
    1054818 9rko:B (1.89) BS01 CA N/A N/A Q8VBX4 41261040
    1054819 9rl1:A (2.3) BS01 A1JG8 N/A N/A O68183 41345223
    1054820 9rl1:B (2.3) BS01 A1JG8 N/A N/A O68183 41345223
    1054821 9rl4:A (3.5) BS01 dna N/A GO:0000786 ... P68431 N/A
    1054822 9rl4:A (3.5) BS02 dna N/A GO:0000786 ... P68431 N/A
    1054823 9rl4:B (3.5) BS01 dna N/A GO:0000781 ... P62805 N/A
    1054824 9rl4:B (3.5) BS02 dna N/A GO:0000781 ... P62805 N/A
    1054825 9rl4:C (3.5) BS01 dna N/A GO:0000786 ... P04908 N/A
    1054826 9rl4:C (3.5) BS02 dna N/A GO:0000786 ... P04908 N/A
    1054827 9rl4:D (3.5) BS01 dna N/A GO:0000786 ... P06899 N/A
    1054828 9rl4:D (3.5) BS02 dna N/A GO:0000786 ... P06899 N/A
    1054829 9rl4:D (3.5) BS03 PTD N/A GO:0000786 ... P06899 N/A
    1054830 9rl4:D (3.5) BS04 PTD N/A GO:0000786 ... P06899 N/A
    1054831 9rl4:E (3.5) BS01 dna N/A GO:0000786 ... P68431 N/A
    1054832 9rl4:E (3.5) BS02 dna N/A GO:0000786 ... P68431 N/A
    1054833 9rl4:F (3.5) BS01 dna N/A GO:0000781 ... P62805 N/A
    1054834 9rl4:F (3.5) BS02 dna N/A GO:0000781 ... P62805 N/A
    1054835 9rl4:G (3.5) BS01 dna N/A GO:0000786 ... P04908 N/A
    1054836 9rl4:G (3.5) BS02 dna N/A GO:0000786 ... P04908 N/A
    1054837 9rl4:H (3.5) BS01 dna N/A GO:0000786 ... P06899 N/A
    1054838 9rl4:H (3.5) BS02 dna N/A GO:0000786 ... P06899 N/A
    1054839 9rl4:H (3.5) BS03 PTD N/A GO:0000786 ... P06899 N/A
    1054840 9rl4:I (3.5) BS01 PTD N/A GO:0000122 ... P51532 N/A
    1054841 9rl4:L (3.5) BS01 ZN N/A GO:0000785 ... O14497 N/A
    1054842 9rl4:L (3.5) BS02 PTD N/A GO:0000785 ... O14497 N/A
    1054843 9rl4:M (3.5) BS01 PTD N/A GO:0000776 ... Q12824 N/A
    1054844 9rl4:W (3.5) BS01 dna N/A N/A P48431 N/A
    1054845 9rl5:A (3.1) BS01 ABU N/A N/A P31644 N/A
    1054846 9rl5:B (3.1) BS01 ABU N/A N/A P28472
    P42212
    N/A
    1054847 9rl5:B (3.1) BS02 TOR N/A N/A P28472
    P42212
    N/A
    1054848 9rl5:D (3.1) BS01 ABU N/A N/A P31644 N/A
    1054849 9rl5:D (3.1) BS02 TOR N/A N/A P31644 N/A
    1054850 9rl5:E (3.1) BS01 ABU N/A N/A P28472
    P42212
    N/A
    1054851 9rl5:E (3.1) BS02 TOR N/A N/A P28472
    P42212
    N/A
    1054852 9rlc:C (2.8) BS01 peptide N/A GO:0005515 ... P0ADC3 41557797
    1054853 9rlc:C (2.8) BS02 Z41 N/A GO:0005515 ... P0ADC3 41557797
    1054854 9rlc:E (2.8) BS01 peptide N/A GO:0005515 ... P75958 41557797
    1054855 9rlc:E (2.8) BS02 Z41 N/A GO:0005515 ... P75958 41557797
    1054856 9rld:C (3.0) BS01 peptide N/A GO:0005515 ... P0ADC3 41557797
    1054857 9rld:C (3.0) BS02 Z41 N/A GO:0005515 ... P0ADC3 41557797
    1054858 9rld:E (3.0) BS01 peptide N/A GO:0005515 ... P75958 41557797
    1054859 9rld:E (3.0) BS02 Z41 N/A GO:0005515 ... P75958 41557797
    1054860 9rle:C (3.18) BS01 Z41 N/A GO:0005515 ... P0ADC3 41557797
    1054861 9rle:E (3.18) BS01 Z41 N/A GO:0005515 ... P75958 41557797
    1054862 9rlf:C (3.17) BS01 Z41 N/A GO:0005515 ... P0ADC3 41557797
    1054863 9rlf:E (3.17) BS01 peptide N/A GO:0005515 ... P75958 41557797
    1054864 9rlf:E (3.17) BS02 Z41 N/A GO:0005515 ... P75958 41557797
    1054865 9rlg:C (3.09) BS01 Z41 N/A GO:0005515 ... P0ADC3 41557797
    1054866 9rlg:E (3.09) BS01 Z41 N/A GO:0005515 ... P75958 41557797
    1054867 9rlh:C (3.19) BS01 peptide N/A GO:0005515 ... P0ADC3 41557797
    1054868 9rlh:C (3.19) BS02 Z41 N/A GO:0005515 ... P0ADC3 41557797
    1054869 9rlh:E (3.19) BS01 peptide N/A GO:0005515 ... P75958 41557797
    1054870 9rlh:E (3.19) BS02 Z41 N/A GO:0005515 ... P75958 41557797
    1054871 9rli:C (3.63) BS01 Z41 N/A GO:0005515 ... P0ADC3 41557797
    1054872 9rlj:D (2.9) BS01 AGS N/A GO:0005524 ... P75957 41557797
    1054873 9rlj:D (2.9) BS02 MG N/A GO:0005524 ... P75957 41557797
    1054874 9rlj:D (2.9) BS03 AGS N/A GO:0005524 ... P75957 41557797
    1054875 9rlj:F (2.9) BS01 AGS N/A GO:0005524 ... P75957 41557797
    1054876 9rlj:F (2.9) BS02 AGS N/A GO:0005524 ... P75957 41557797
    1054877 9rlj:F (2.9) BS03 MG N/A GO:0005524 ... P75957 41557797
    1054878 9rlk:C (3.29) BS01 peptide N/A GO:0005515 ... P0ADC3 41557797
    1054879 9rlk:C (3.29) BS02 Z41 N/A GO:0005515 ... P0ADC3 41557797
    1054880 9rlk:E (3.29) BS01 peptide N/A N/A P75958 41557797
    1054881 9rlk:E (3.29) BS02 Z41 N/A N/A P75958 41557797
    1054882 9rll:A (0.95) BS01 CU N/A N/A N/A 41794770
    1054883 9rll:A (0.95) BS02 CU N/A N/A N/A 41794770
    1054884 9rlm:A (1.25) BS01 A1JG4 N/A GO:0000413 ... P30405 N/A
    1054885 9rlo:A (1.9) BS01 A1JG9 N/A GO:0003950 ... Q460N3 40914013
    1054886 9rlo:B (1.9) BS01 A1JG9 N/A GO:0003950 ... Q460N3 40914013
    1054887 9rlp:A (1.8) BS01 A1JHA N/A GO:0003950 ... Q460N3 40914013
    1054888 9rlq:A (1.8) BS01 A1JHB N/A GO:0003950 ... Q460N3 40914013
    1054889 9rlr:A (2.6) BS01 A1JHC N/A GO:0003950 ... Q460N3 40914013
    1054890 9rls:A (2.75) BS01 A1JHC N/A GO:0003950 ... Q53GL7 40914013
    1054891 9rls:B (2.75) BS01 A1JHC N/A GO:0003950 ... Q53GL7 40914013
    1054892 9rls:C (2.75) BS01 A1JHC N/A GO:0003950 ... Q53GL7 40914013
    1054893 9rls:D (2.75) BS01 A1JHC N/A GO:0003950 ... Q53GL7 40914013
    1054894 9rls:D (2.75) BS02 A1JHC N/A GO:0003950 ... Q53GL7 40914013
    1054895 9rls:E (2.75) BS01 A1JHC N/A GO:0003950 ... Q53GL7 40914013
    1054896 9rls:E (2.75) BS02 A1JHC N/A GO:0003950 ... Q53GL7 40914013
    1054897 9rls:F (2.75) BS01 A1JHC N/A GO:0003950 ... Q53GL7 40914013
    1054898 9rls:G (2.75) BS01 A1JHC N/A GO:0003950 ... Q53GL7 40914013
    1054899 9rls:H (2.75) BS01 A1JHC N/A GO:0003950 ... Q53GL7 40914013
    1054900 9rm3:A (2.857) BS01 A1JJP N/A N/A P20273 41311955
    1054901 9rm3:A (2.857) BS02 A1JJP N/A N/A P20273 41311955
    1054902 9rm3:B (2.857) BS01 A1JJP N/A N/A P20273 41311955
    1054903 9rm3:C (2.857) BS01 A1JJP N/A N/A P20273 41311955
    1054904 9rm3:D (2.857) BS01 A1JJP N/A N/A P20273 41311955
    1054905 9rm4:BBB (1.95) BS01 A1JHM N/A GO:0003723 ... Q32ZE1 N/A
    1054906 9rm5:a (2.44) BS01 dna N/A GO:0000166 ... Q89269 41790558
    1054907 9rm5:a (2.44) BS02 AGS N/A GO:0000166 ... Q89269 41790558
    1054908 9rm5:b (2.44) BS01 dna N/A GO:0000166 ... Q89269 41790558
    1054909 9rm5:b (2.44) BS02 AGS N/A GO:0000166 ... Q89269 41790558
    1054910 9rm5:b (2.44) BS03 AGS N/A GO:0000166 ... Q89269 41790558
    1054911 9rm5:c (2.44) BS01 dna N/A GO:0000166 ... Q89269 41790558
    1054912 9rm5:c (2.44) BS02 AGS N/A GO:0000166 ... Q89269 41790558
    1054913 9rm5:c (2.44) BS03 AGS N/A GO:0000166 ... Q89269 41790558
    1054914 9rm5:d (2.44) BS01 dna N/A GO:0000166 ... Q89269 41790558
    1054915 9rm5:d (2.44) BS02 AGS N/A GO:0000166 ... Q89269 41790558
    1054916 9rm5:d (2.44) BS03 AGS N/A GO:0000166 ... Q89269 41790558
    1054917 9rm5:e (2.44) BS01 dna N/A GO:0000166 ... Q89269 41790558
    1054918 9rm5:e (2.44) BS02 AGS N/A GO:0000166 ... Q89269 41790558
    1054919 9rm5:e (2.44) BS03 ADP N/A GO:0000166 ... Q89269 41790558
    1054920 9rm5:f (2.44) BS01 dna N/A GO:0000166 ... Q89269 41790558
    1054921 9rm5:f (2.44) BS02 ADP N/A GO:0000166 ... Q89269 41790558
    1054922 9rm6:A (1.5) BS01 A1JHN N/A GO:0003723 ... Q32ZE1 N/A
    1054923 9rm6:B (1.5) BS01 A1JHN N/A GO:0003723 ... Q32ZE1 N/A
    1054924 9rm7:A (1.45) BS01 A1JHL N/A GO:0003723 ... Q32ZE1 N/A
    1054925 9rm7:B (1.45) BS01 A1JHL N/A GO:0003723 ... Q32ZE1 N/A
    1054926 9rma:A (3.94) BS01 MN N/A N/A P11215 N/A
    1054927 9rmc:A (4.2) BS01 dna N/A GO:0000786 ... P68431 N/A
    1054928 9rmc:A (4.2) BS02 dna N/A GO:0000786 ... P68431 N/A
    1054929 9rmc:B (4.2) BS01 dna N/A GO:0000781 ... P62805 N/A
    1054930 9rmc:B (4.2) BS02 dna N/A GO:0000781 ... P62805 N/A
    1054931 9rmc:C (4.2) BS01 dna N/A GO:0000786 ... P04908 N/A
    1054932 9rmc:C (4.2) BS02 dna N/A GO:0000786 ... P04908 N/A
    1054933 9rmc:D (4.2) BS01 dna N/A GO:0000786 ... P06899 N/A
    1054934 9rmc:D (4.2) BS02 dna N/A GO:0000786 ... P06899 N/A
    1054935 9rmc:E (4.2) BS01 dna N/A GO:0000786 ... P68431 N/A
    1054936 9rmc:E (4.2) BS02 dna N/A GO:0000786 ... P68431 N/A
    1054937 9rmc:F (4.2) BS01 dna N/A GO:0000781 ... P62805 N/A
    1054938 9rmc:F (4.2) BS02 dna N/A GO:0000781 ... P62805 N/A
    1054939 9rmc:G (4.2) BS01 dna N/A GO:0000786 ... P04908 N/A
    1054940 9rmc:G (4.2) BS02 dna N/A GO:0000786 ... P04908 N/A
    1054941 9rmc:H (4.2) BS01 dna N/A GO:0000786 ... P06899 N/A
    1054942 9rmc:L (4.2) BS01 ZN N/A GO:0000785 ... O14497 N/A
    1054943 9rmc:W (4.2) BS01 dna N/A N/A P48431 N/A
    1054944 9rmc:W (4.2) BS02 dna N/A N/A P48431 N/A
    1054945 9rme:A (-1.00) BS01 A1JHT N/A N/A P0DTC1 41176653
    1054946 9rmr:A (1.65) BS01 peptide N/A GO:0003677 ... P19793 40704597
    1054947 9rmr:A (1.65) BS02 A1JH6 N/A GO:0003677 ... P19793 40704597
    1054948 9rms:A (3.8) BS01 E2Q N/A GO:0004970 ... P19493 40954371
    1054949 9rms:B (3.8) BS01 E2Q N/A GO:0004970 ... P19493 40954371
    1054950 9rms:C (3.8) BS01 E2Q N/A GO:0004970 ... P19493 40954371
    1054951 9rms:D (3.8) BS01 E2Q N/A GO:0004970 ... P19493 40954371
    1054952 9rmu:A (3.3) BS01 ZN N/A N/A Q1XE75 41708858
    1054953 9rmu:B (3.3) BS01 ZN N/A N/A Q1XE75 41708858
    1054954 9rmu:C (3.3) BS01 ZN N/A N/A Q1XE75 41708858
    1054955 9rmu:D (3.3) BS01 rna N/A N/A Q1XE75 41708858
    1054956 9rmu:D (3.3) BS02 ZN N/A N/A Q1XE75 41708858
    1054957 9rmu:E (3.3) BS01 ZN N/A N/A Q1XE75 41708858
    1054958 9rmu:F (3.3) BS01 ZN N/A N/A Q1XE75 41708858
    1054959 9rmu:G (3.3) BS01 ZN N/A N/A Q1XE75 41708858
    1054960 9rmu:H (3.3) BS01 rna N/A N/A Q1XE75 41708858
    1054961 9rmu:H (3.3) BS02 ZN N/A N/A Q1XE75 41708858
    1054962 9rmu:b (3.3) BS01 rna N/A N/A Q1XE75 41708858
    1054963 9rmu:b (3.3) BS02 ZN N/A N/A Q1XE75 41708858
    1054964 9rmu:f (3.3) BS01 rna N/A N/A Q1XE75 41708858
    1054965 9rmu:f (3.3) BS02 ZN N/A N/A Q1XE75 41708858
    1054966 9rmw:A (2.9) BS01 CYZ N/A GO:0004970 ... P19493 40954371
    1054967 9rmw:A (2.9) BS02 GLU N/A GO:0004970 ... P19493 40954371
    1054968 9rmw:A (2.9) BS03 CYZ N/A GO:0004970 ... P19493 40954371
    1054969 9rmw:B (2.9) BS01 GLU N/A GO:0004970 ... P19493 40954371
    1054970 9rmw:B (2.9) BS02 CYZ N/A GO:0004970 ... P19493 40954371
    1054971 9rmw:B (2.9) BS03 CYZ N/A GO:0004970 ... P19493 40954371
    1054972 9rmw:C (2.9) BS01 CYZ N/A GO:0004970 ... P19493 40954371
    1054973 9rmw:C (2.9) BS02 CYZ N/A GO:0004970 ... P19493 40954371
    1054974 9rmw:C (2.9) BS03 GLU N/A GO:0004970 ... P19493 40954371
    1054975 9rmw:D (2.9) BS01 CYZ N/A GO:0004970 ... P19493 40954371
    1054976 9rmw:D (2.9) BS02 GLU N/A GO:0004970 ... P19493 40954371
    1054977 9rmw:D (2.9) BS03 CYZ N/A GO:0004970 ... P19493 40954371
    1054978 9rmx:A (4.63) BS01 ZN N/A N/A P12497 41708858
    1054979 9rmx:B (4.63) BS01 ZN N/A N/A P12497 41708858
    1054980 9rmx:C (4.63) BS01 ZN N/A N/A P12497 41708858
    1054981 9rmx:D (4.63) BS01 ZN N/A N/A P12497 41708858
    1054982 9rmx:E (4.63) BS01 ZN N/A N/A P12497 41708858
    1054983 9rmx:F (4.63) BS01 ZN N/A N/A P12497 41708858
    1054984 9rmx:G (4.63) BS01 ZN N/A N/A P12497 41708858
    1054985 9rmx:H (4.63) BS01 ZN N/A N/A P12497 41708858
    1054986 9rmx:I (4.63) BS01 ZN N/A N/A P12497 41708858
    1054987 9rmx:J (4.63) BS01 ZN N/A N/A P12497 41708858
    1054988 9rmx:K (4.63) BS01 ZN N/A N/A P12497 41708858
    1054989 9rmx:L (4.63) BS01 ZN N/A N/A P12497 41708858
    1054990 9rn0:A (0.95) BS01 CU N/A N/A N/A 41794770
    1054991 9rn0:A (0.95) BS02 CU N/A N/A N/A 41794770
    1054992 9rn0:A (0.95) BS03 NO2 N/A N/A N/A 41794770
    1054993 9rn0:A (0.95) BS04 NO2 N/A N/A N/A 41794770
    1054994 9rn1:A (5.9) BS01 dna N/A GO:0000786 ... P68431 N/A
    1054995 9rn1:A (5.9) BS02 dna N/A GO:0000786 ... P68431 N/A
    1054996 9rn1:B (5.9) BS01 dna N/A GO:0000781 ... P62805 N/A
    1054997 9rn1:B (5.9) BS02 dna N/A GO:0000781 ... P62805 N/A
    1054998 9rn1:C (5.9) BS01 dna N/A GO:0000786 ... P04908 N/A
    1054999 9rn1:C (5.9) BS02 dna N/A GO:0000786 ... P04908 N/A
    1055000 9rn1:D (5.9) BS01 dna N/A GO:0000786 ... P06899 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).