SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1055001 9rn1:D (5.9) BS02 dna N/A GO:0000786 ... P06899 N/A
    1055002 9rn1:E (5.9) BS01 dna N/A GO:0000786 ... P68431 N/A
    1055003 9rn1:E (5.9) BS02 dna N/A GO:0000786 ... P68431 N/A
    1055004 9rn1:F (5.9) BS01 dna N/A GO:0000781 ... P62805 N/A
    1055005 9rn1:F (5.9) BS02 dna N/A GO:0000781 ... P62805 N/A
    1055006 9rn1:G (5.9) BS01 dna N/A GO:0000786 ... P04908 N/A
    1055007 9rn1:G (5.9) BS02 dna N/A GO:0000786 ... P04908 N/A
    1055008 9rn1:H (5.9) BS01 dna N/A GO:0000786 ... P06899 N/A
    1055009 9rn1:I (5.9) BS01 dna N/A GO:0000122 ... P51532 N/A
    1055010 9rn1:I (5.9) BS02 dna N/A GO:0000122 ... P51532 N/A
    1055011 9rn1:W (5.9) BS01 dna N/A N/A P48431 N/A
    1055012 9rn1:W (5.9) BS02 dna N/A N/A P48431 N/A
    1055013 9rn2:A (4.1) BS01 dna N/A GO:0000786 ... P68431 N/A
    1055014 9rn2:A (4.1) BS02 dna N/A GO:0000786 ... P68431 N/A
    1055015 9rn2:B (4.1) BS01 dna N/A GO:0000781 ... P62805 N/A
    1055016 9rn2:B (4.1) BS02 dna N/A GO:0000781 ... P62805 N/A
    1055017 9rn2:C (4.1) BS01 dna N/A GO:0000786 ... P04908 N/A
    1055018 9rn2:C (4.1) BS02 dna N/A GO:0000786 ... P04908 N/A
    1055019 9rn2:D (4.1) BS01 dna N/A GO:0000786 ... P06899 N/A
    1055020 9rn2:E (4.1) BS01 dna N/A GO:0000786 ... P68431 N/A
    1055021 9rn2:E (4.1) BS02 dna N/A GO:0000786 ... P68431 N/A
    1055022 9rn2:F (4.1) BS01 dna N/A GO:0000781 ... P62805 N/A
    1055023 9rn2:F (4.1) BS02 dna N/A GO:0000781 ... P62805 N/A
    1055024 9rn2:G (4.1) BS01 dna N/A GO:0000786 ... P04908 N/A
    1055025 9rn2:G (4.1) BS02 dna N/A GO:0000786 ... P04908 N/A
    1055026 9rn2:H (4.1) BS01 dna N/A GO:0000786 ... P06899 N/A
    1055027 9rn2:W (4.1) BS01 dna N/A N/A P48431 N/A
    1055028 9rn2:W (4.1) BS02 dna N/A N/A P48431 N/A
    1055029 9rn8:A (1.79) BS01 EL5 N/A GO:0006355 ... A9CI81 40976591
    1055030 9rn8:B (1.79) BS01 EL5 N/A GO:0006355 ... A9CI81 40976591
    1055031 9rnz:A (1.02) BS01 CU N/A N/A Q89EJ6 41794770
    1055032 9rnz:A (1.02) BS02 CU N/A N/A Q89EJ6 41794770
    1055033 9rnz:A (1.02) BS03 NO2 N/A N/A Q89EJ6 41794770
    1055034 9rnz:A (1.02) BS04 NO2 N/A N/A Q89EJ6 41794770
    1055035 9rnz:A (1.02) BS05 FRU N/A N/A Q89EJ6 41794770
    1055036 9ro1:A (1.0) BS01 CU N/A N/A Q89EJ6 41794770
    1055037 9ro1:A (1.0) BS02 CU N/A N/A Q89EJ6 41794770
    1055038 9ro1:A (1.0) BS03 FRU N/A N/A Q89EJ6 41794770
    1055039 9ro7:A (3.15) BS01 A1JJO N/A N/A P20273 41311955
    1055040 9ro7:A (3.15) BS02 A1JJO N/A N/A P20273 41311955
    1055041 9ro7:B (3.15) BS01 A1JJO N/A N/A P20273 41311955
    1055042 9ro7:B (3.15) BS02 A1JJO N/A N/A P20273 41311955
    1055043 9ro7:C (3.15) BS01 A1JJO N/A N/A P20273 41311955
    1055044 9ro7:D (3.15) BS01 A1JJO N/A N/A P20273 41311955
    1055045 9rob:A (2.7) BS01 A1JJN N/A N/A P20273 41311955
    1055046 9rob:B (2.7) BS01 A1JJN N/A N/A P20273 41311955
    1055047 9roc:A (1.05) BS01 CU N/A N/A N/A 41794770
    1055048 9roc:A (1.05) BS02 CU N/A N/A N/A 41794770
    1055049 9ros:A (1.15) BS01 CU N/A N/A N/A 41794770
    1055050 9ros:A (1.15) BS02 CU N/A N/A N/A 41794770
    1055051 9ros:A (1.15) BS03 GLC N/A N/A N/A 41794770
    1055052 9ros:A (1.15) BS04 GLC N/A N/A N/A 41794770
    1055053 9ros:A (1.15) BS05 FRU N/A N/A N/A 41794770
    1055054 9rp0:A (1.8) BS01 MG N/A N/A C9K1X5 40990851
    1055055 9rp0:A (1.8) BS02 MG N/A N/A C9K1X5 40990851
    1055056 9rp0:A (1.8) BS03 MG N/A N/A C9K1X5 40990851
    1055057 9rp0:A (1.8) BS04 EXW N/A N/A C9K1X5 40990851
    1055058 9rp0:B (1.8) BS01 MG N/A N/A C9K1X5 40990851
    1055059 9rp0:B (1.8) BS02 MG N/A N/A C9K1X5 40990851
    1055060 9rp0:B (1.8) BS03 EXW N/A N/A C9K1X5 40990851
    1055061 9rp1:A (2.1) BS01 AHD N/A N/A C9K1X5 40990851
    1055062 9rp1:A (2.1) BS02 MG N/A N/A C9K1X5 40990851
    1055063 9rp1:B (2.1) BS01 AHD N/A N/A C9K1X5 40990851
    1055064 9rp1:B (2.1) BS02 MG N/A N/A C9K1X5 40990851
    1055065 9rp2:A (1.93) BS01 AHD N/A N/A C9K1X5 40990851
    1055066 9rp2:A (1.93) BS02 MG N/A N/A C9K1X5 40990851
    1055067 9rp2:B (1.93) BS01 MG N/A N/A C9K1X5 40990851
    1055068 9rp2:B (1.93) BS02 AHD N/A N/A C9K1X5 40990851
    1055069 9rpb:A (3.1) BS01 ABU N/A N/A P31644
    P42212
    N/A
    1055070 9rpb:B (3.1) BS01 ABU N/A N/A P28472
    P42212
    N/A
    1055071 9rpb:E (3.1) BS01 ABU N/A N/A P28472
    P42212
    N/A
    1055072 9rpd:J (4.9) BS01 peptide N/A GO:0051225 ... Q9VAP2 40846850
    1055073 9rpd:J (4.9) BS02 peptide N/A GO:0051225 ... Q9VAP2 40846850
    1055074 9rpm:A (2.66) BS01 NCN N/A GO:0000309 ... F4K687 41109367
    1055075 9rpm:A (2.66) BS02 MG N/A GO:0000309 ... F4K687 41109367
    1055076 9rpo:A (2.019) BS01 A1JH5 N/A N/A O43598 41531952
    1055077 9rpo:B (2.019) BS01 A1JH5 N/A N/A O43598 41531952
    1055078 9rpr:A (2.78) BS01 PXS N/A N/A P31554 41296721
    1055079 9rps:A (3.01) BS01 peptide N/A N/A Q83SQ0 41296721
    1055080 9rps:A (3.01) BS02 PXS N/A N/A Q83SQ0 41296721
    1055081 9rps:D (3.01) BS01 peptide N/A N/A Q333D9 41296721
    1055082 9rpv:E4 (2.35) BS01 rna N/A GO:0001094 ... O60869 41261136
    1055083 9rpv:LA (2.35) BS01 rna N/A GO:0002181 ... P62917 41261136
    1055084 9rpv:LA (2.35) BS02 rna N/A GO:0002181 ... P62917 41261136
    1055085 9rpv:LB (2.35) BS01 rna N/A GO:0002181 ... P39023 41261136
    1055086 9rpv:LC (2.35) BS01 rna N/A GO:0002181 ... P36578 41261136
    1055087 9rpv:LC (2.35) BS02 rna N/A GO:0002181 ... P36578 41261136
    1055088 9rpv:LD (2.35) BS01 rna N/A GO:0000027 ... P46777 41261136
    1055089 9rpv:LD (2.35) BS02 rna N/A GO:0000027 ... P46777 41261136
    1055090 9rpv:LE (2.35) BS01 rna N/A GO:0002181 ... Q02878 41261136
    1055091 9rpv:LF (2.35) BS01 rna N/A GO:0000463 ... P18124 41261136
    1055092 9rpv:LF (2.35) BS02 rna N/A GO:0000463 ... P18124 41261136
    1055093 9rpv:LG (2.35) BS01 rna N/A GO:0000470 ... P62424 41261136
    1055094 9rpv:LG (2.35) BS02 rna N/A GO:0000470 ... P62424 41261136
    1055095 9rpv:LH (2.35) BS01 rna N/A GO:0002181 ... P32969 41261136
    1055096 9rpv:LI (2.35) BS01 rna N/A GO:0000027 ... Q96L21 41261136
    1055097 9rpv:LI (2.35) BS02 rna N/A GO:0000027 ... Q96L21 41261136
    1055098 9rpv:LI (2.35) BS03 rna N/A GO:0000027 ... Q96L21 41261136
    1055099 9rpv:LJ (2.35) BS01 rna N/A GO:0000027 ... P62913 41261136
    1055100 9rpv:LJ (2.35) BS02 rna N/A GO:0000027 ... P62913 41261136
    1055101 9rpv:LL (2.35) BS01 rna N/A GO:0002181 ... P26373 41261136
    1055102 9rpv:LL (2.35) BS02 rna N/A GO:0002181 ... P26373 41261136
    1055103 9rpv:LM (2.35) BS01 rna N/A GO:0002181 ... P50914 41261136
    1055104 9rpv:LN (2.35) BS01 rna N/A GO:0002181 ... P61313 41261136
    1055105 9rpv:LN (2.35) BS02 rna N/A GO:0002181 ... P61313 41261136
    1055106 9rpv:LO (2.35) BS01 rna N/A GO:0002181 ... P40429 41261136
    1055107 9rpv:LP (2.35) BS01 rna N/A GO:0002181 ... P18621 41261136
    1055108 9rpv:LP (2.35) BS02 rna N/A GO:0002181 ... P18621 41261136
    1055109 9rpv:LQ (2.35) BS01 rna N/A GO:0002181 ... Q07020 41261136
    1055110 9rpv:LR (2.35) BS01 rna N/A GO:0002181 ... P84098 41261136
    1055111 9rpv:LR (2.35) BS02 rna N/A GO:0002181 ... P84098 41261136
    1055112 9rpv:LS (2.35) BS01 rna N/A GO:0002181 ... Q02543 41261136
    1055113 9rpv:LS (2.35) BS02 rna N/A GO:0002181 ... Q02543 41261136
    1055114 9rpv:LT (2.35) BS01 rna N/A GO:0001650 ... P46778 41261136
    1055115 9rpv:LT (2.35) BS02 rna N/A GO:0001650 ... P46778 41261136
    1055116 9rpv:LU (2.35) BS01 rna N/A GO:0002181 ... P35268 41261136
    1055117 9rpv:LV (2.35) BS01 rna N/A GO:0000122 ... P62829 41261136
    1055118 9rpv:LV (2.35) BS02 rna N/A GO:0000122 ... P62829 41261136
    1055119 9rpv:LW (2.35) BS01 rna N/A GO:0002181 ... P83731 41261136
    1055120 9rpv:LW (2.35) BS02 rna N/A GO:0002181 ... P83731 41261136
    1055121 9rpv:LX (2.35) BS01 rna N/A GO:0002181 ... P62750 41261136
    1055122 9rpv:LX (2.35) BS02 rna N/A GO:0002181 ... P62750 41261136
    1055123 9rpv:LY (2.35) BS01 rna N/A GO:0002181 ... P61254 41261136
    1055124 9rpv:LY (2.35) BS02 rna N/A GO:0002181 ... P61254 41261136
    1055125 9rpv:LZ (2.35) BS01 rna N/A GO:0002181 ... P61353 41261136
    1055126 9rpv:La (2.35) BS01 rna N/A GO:0002181 ... P46776 41261136
    1055127 9rpv:Lb (2.35) BS01 rna N/A GO:0002181 ... P47914 41261136
    1055128 9rpv:Lc (2.35) BS01 rna N/A GO:0002181 ... P62888 41261136
    1055129 9rpv:Ld (2.35) BS01 rna N/A GO:0002181 ... P62899 41261136
    1055130 9rpv:Le (2.35) BS01 rna N/A GO:0002181 ... P62910 41261136
    1055131 9rpv:Lf (2.35) BS01 rna N/A GO:0002181 ... P18077 41261136
    1055132 9rpv:Lg (2.35) BS01 rna N/A GO:0002181 ... P49207 41261136
    1055133 9rpv:Lg (2.35) BS02 ZN N/A GO:0002181 ... P49207 41261136
    1055134 9rpv:Lh (2.35) BS01 rna N/A GO:0000463 ... P42766 41261136
    1055135 9rpv:Lh (2.35) BS02 rna N/A GO:0000463 ... P42766 41261136
    1055136 9rpv:Li (2.35) BS01 rna N/A GO:0002181 ... Q9Y3U8 41261136
    1055137 9rpv:Lj (2.35) BS01 rna N/A GO:0000448 ... P61927 41261136
    1055138 9rpv:Lj (2.35) BS02 rna N/A GO:0000448 ... P61927 41261136
    1055139 9rpv:Lj (2.35) BS03 ZN N/A GO:0000448 ... P61927 41261136
    1055140 9rpv:Lk (2.35) BS01 rna N/A GO:0002181 ... P63173 41261136
    1055141 9rpv:Ll (2.35) BS01 rna N/A GO:0002181 ... P62891 41261136
    1055142 9rpv:Ll (2.35) BS02 rna N/A GO:0002181 ... P62891 41261136
    1055143 9rpv:Lm (2.35) BS01 rna N/A GO:0002181 ... P62987 41261136
    1055144 9rpv:Lm (2.35) BS02 ZN N/A GO:0002181 ... P62987 41261136
    1055145 9rpv:Lo (2.35) BS01 rna N/A GO:0002181 ... P83881 41261136
    1055146 9rpv:Lo (2.35) BS02 rna N/A GO:0002181 ... P83881 41261136
    1055147 9rpv:Lo (2.35) BS03 ZN N/A GO:0002181 ... P83881 41261136
    1055148 9rpv:Lp (2.35) BS01 rna N/A GO:0002181 ... P61513 41261136
    1055149 9rpv:Lp (2.35) BS02 ZN N/A GO:0002181 ... P61513 41261136
    1055150 9rpv:Lr (2.35) BS01 rna N/A GO:0002181 ... P46779 41261136
    1055151 9rpv:MA (2.35) BS01 rna N/A GO:0002181 ... P62917 41261136
    1055152 9rpv:MA (2.35) BS02 rna N/A GO:0002181 ... P62917 41261136
    1055153 9rpv:MB (2.35) BS01 rna N/A GO:0002181 ... P39023 41261136
    1055154 9rpv:MC (2.35) BS01 rna N/A GO:0002181 ... P36578 41261136
    1055155 9rpv:MC (2.35) BS02 rna N/A GO:0002181 ... P36578 41261136
    1055156 9rpv:MD (2.35) BS01 rna N/A GO:0000027 ... P46777 41261136
    1055157 9rpv:MD (2.35) BS02 rna N/A GO:0000027 ... P46777 41261136
    1055158 9rpv:MD (2.35) BS03 MG N/A GO:0000027 ... P46777 41261136
    1055159 9rpv:ME (2.35) BS01 rna N/A GO:0002181 ... Q02878 41261136
    1055160 9rpv:MF (2.35) BS01 rna N/A GO:0000463 ... P18124 41261136
    1055161 9rpv:MF (2.35) BS02 rna N/A GO:0000463 ... P18124 41261136
    1055162 9rpv:MG (2.35) BS01 rna N/A GO:0000470 ... P62424 41261136
    1055163 9rpv:MG (2.35) BS02 rna N/A GO:0000470 ... P62424 41261136
    1055164 9rpv:MH (2.35) BS01 rna N/A GO:0002181 ... P32969 41261136
    1055165 9rpv:MI (2.35) BS01 rna N/A GO:0000122 ... P27635 41261136
    1055166 9rpv:MI (2.35) BS02 rna N/A GO:0000122 ... P27635 41261136
    1055167 9rpv:MI (2.35) BS03 MG N/A GO:0000122 ... P27635 41261136
    1055168 9rpv:MJ (2.35) BS01 rna N/A GO:0000027 ... P62913 41261136
    1055169 9rpv:MJ (2.35) BS02 rna N/A GO:0000027 ... P62913 41261136
    1055170 9rpv:MJ (2.35) BS03 rna N/A GO:0000027 ... P62913 41261136
    1055171 9rpv:ML (2.35) BS01 rna N/A GO:0002181 ... P26373 41261136
    1055172 9rpv:ML (2.35) BS02 rna N/A GO:0002181 ... P26373 41261136
    1055173 9rpv:ML (2.35) BS03 MG N/A GO:0002181 ... P26373 41261136
    1055174 9rpv:MM (2.35) BS01 rna N/A GO:0002181 ... P50914 41261136
    1055175 9rpv:MN (2.35) BS01 rna N/A GO:0002181 ... P61313 41261136
    1055176 9rpv:MN (2.35) BS02 rna N/A GO:0002181 ... P61313 41261136
    1055177 9rpv:MO (2.35) BS01 rna N/A GO:0002181 ... P40429 41261136
    1055178 9rpv:MO (2.35) BS02 MG N/A GO:0002181 ... P40429 41261136
    1055179 9rpv:MO (2.35) BS03 MG N/A GO:0002181 ... P40429 41261136
    1055180 9rpv:MP (2.35) BS01 rna N/A GO:0002181 ... P18621 41261136
    1055181 9rpv:MP (2.35) BS02 rna N/A GO:0002181 ... P18621 41261136
    1055182 9rpv:MP (2.35) BS03 MG N/A GO:0002181 ... P18621 41261136
    1055183 9rpv:MQ (2.35) BS01 rna N/A GO:0002181 ... Q07020 41261136
    1055184 9rpv:MQ (2.35) BS02 MG N/A GO:0002181 ... Q07020 41261136
    1055185 9rpv:MR (2.35) BS01 rna N/A GO:0002181 ... P84098 41261136
    1055186 9rpv:MR (2.35) BS02 rna N/A GO:0002181 ... P84098 41261136
    1055187 9rpv:MS (2.35) BS01 rna N/A GO:0002181 ... Q02543 41261136
    1055188 9rpv:MS (2.35) BS02 rna N/A GO:0002181 ... Q02543 41261136
    1055189 9rpv:MS (2.35) BS03 MG N/A GO:0002181 ... Q02543 41261136
    1055190 9rpv:MT (2.35) BS01 rna N/A GO:0001650 ... P46778 41261136
    1055191 9rpv:MT (2.35) BS02 rna N/A GO:0001650 ... P46778 41261136
    1055192 9rpv:MU (2.35) BS01 rna N/A GO:0002181 ... P35268 41261136
    1055193 9rpv:MV (2.35) BS01 rna N/A GO:0000122 ... P62829 41261136
    1055194 9rpv:MW (2.35) BS01 rna N/A GO:0002181 ... P83731 41261136
    1055195 9rpv:MW (2.35) BS02 rna N/A GO:0002181 ... P83731 41261136
    1055196 9rpv:MX (2.35) BS01 rna N/A GO:0002181 ... P62750 41261136
    1055197 9rpv:MX (2.35) BS02 rna N/A GO:0002181 ... P62750 41261136
    1055198 9rpv:MY (2.35) BS01 rna N/A GO:0002181 ... P61254 41261136
    1055199 9rpv:MY (2.35) BS02 rna N/A GO:0002181 ... P61254 41261136
    1055200 9rpv:MY (2.35) BS03 MG N/A GO:0002181 ... P61254 41261136

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).