SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1055201 9rpv:MZ (2.35) BS01 rna N/A GO:0002181 ... P61353 41261136
    1055202 9rpv:Ma (2.35) BS01 rna N/A GO:0002181 ... P46776 41261136
    1055203 9rpv:Mb (2.35) BS01 rna N/A GO:0002181 ... P47914 41261136
    1055204 9rpv:Mc (2.35) BS01 rna N/A GO:0002181 ... P62888 41261136
    1055205 9rpv:Md (2.35) BS01 rna N/A GO:0002181 ... P62899 41261136
    1055206 9rpv:Md (2.35) BS02 MG N/A GO:0002181 ... P62899 41261136
    1055207 9rpv:Me (2.35) BS01 rna N/A GO:0002181 ... P62910 41261136
    1055208 9rpv:Mf (2.35) BS01 rna N/A GO:0002181 ... P18077 41261136
    1055209 9rpv:Mf (2.35) BS02 MG N/A GO:0002181 ... P18077 41261136
    1055210 9rpv:Mg (2.35) BS01 rna N/A GO:0002181 ... P49207 41261136
    1055211 9rpv:Mh (2.35) BS01 rna N/A GO:0000463 ... P42766 41261136
    1055212 9rpv:Mh (2.35) BS02 rna N/A GO:0000463 ... P42766 41261136
    1055213 9rpv:Mi (2.35) BS01 rna N/A GO:0002181 ... Q9Y3U8 41261136
    1055214 9rpv:Mj (2.35) BS01 rna N/A GO:0000448 ... P61927 41261136
    1055215 9rpv:Mj (2.35) BS02 rna N/A GO:0000448 ... P61927 41261136
    1055216 9rpv:Mk (2.35) BS01 rna N/A GO:0002181 ... P63173 41261136
    1055217 9rpv:Ml (2.35) BS01 rna N/A GO:0002181 ... P62891 41261136
    1055218 9rpv:Ml (2.35) BS02 rna N/A GO:0002181 ... P62891 41261136
    1055219 9rpv:Mm (2.35) BS01 rna N/A GO:0002181 ... P62987 41261136
    1055220 9rpv:Mo (2.35) BS01 rna N/A GO:0002181 ... P83881 41261136
    1055221 9rpv:Mo (2.35) BS02 rna N/A GO:0002181 ... P83881 41261136
    1055222 9rpv:Mo (2.35) BS03 rna N/A GO:0002181 ... P83881 41261136
    1055223 9rpv:Mp (2.35) BS01 rna N/A GO:0002181 ... P61513 41261136
    1055224 9rpv:Mp (2.35) BS02 MG N/A GO:0002181 ... P61513 41261136
    1055225 9rpv:Mr (2.35) BS01 rna N/A GO:0002181 ... P46779 41261136
    1055226 9rpv:Mr (2.35) BS02 MG N/A GO:0002181 ... P46779 41261136
    1055227 9rpv:Ms (2.35) BS01 rna N/A GO:0002181 ... P62906 41261136
    1055228 9rpv:Ms (2.35) BS02 rna N/A GO:0002181 ... P62906 41261136
    1055229 9rpv:RA (2.35) BS01 rna N/A GO:0000028 ... P08865 41261136
    1055230 9rpv:RB (2.35) BS01 rna N/A GO:0002181 ... P61247 41261136
    1055231 9rpv:RC (2.35) BS01 rna N/A GO:0002181 ... P15880 41261136
    1055232 9rpv:RD (2.35) BS01 rna N/A GO:0001228 ... P23396 41261136
    1055233 9rpv:RE (2.35) BS01 rna N/A GO:0002181 ... P62701 41261136
    1055234 9rpv:RE (2.35) BS02 MG N/A GO:0002181 ... P62701 41261136
    1055235 9rpv:RF (2.35) BS01 rna N/A GO:0002181 ... P46782 41261136
    1055236 9rpv:RF (2.35) BS02 rna N/A GO:0002181 ... P46782 41261136
    1055237 9rpv:RG (2.35) BS01 rna N/A GO:0002181 ... P62753 41261136
    1055238 9rpv:RH (2.35) BS01 rna N/A GO:0002181 ... P62081 41261136
    1055239 9rpv:RH (2.35) BS02 rna N/A GO:0002181 ... P62081 41261136
    1055240 9rpv:RI (2.35) BS01 rna N/A GO:0002181 ... P62241 41261136
    1055241 9rpv:RI (2.35) BS02 rna N/A GO:0002181 ... P62241 41261136
    1055242 9rpv:RJ (2.35) BS01 rna N/A GO:0002181 ... P46781 41261136
    1055243 9rpv:RK (2.35) BS01 rna N/A GO:0002181 ... P46783 41261136
    1055244 9rpv:RL (2.35) BS01 rna N/A GO:0002181 ... P62280 41261136
    1055245 9rpv:RM (2.35) BS01 rna N/A GO:0002181 ... P25398 41261136
    1055246 9rpv:RN (2.35) BS01 rna N/A GO:0000462 ... P62277 41261136
    1055247 9rpv:RN (2.35) BS02 MG N/A GO:0000462 ... P62277 41261136
    1055248 9rpv:RO (2.35) BS01 rna N/A GO:0000028 ... P62263 41261136
    1055249 9rpv:RP (2.35) BS01 rna N/A GO:0000056 ... P62841 41261136
    1055250 9rpv:RP (2.35) BS02 rna N/A GO:0000056 ... P62841 41261136
    1055251 9rpv:RQ (2.35) BS01 rna N/A GO:0000462 ... P62249 41261136
    1055252 9rpv:RR (2.35) BS01 rna N/A GO:0002181 ... P08708 41261136
    1055253 9rpv:RS (2.35) BS01 rna N/A GO:0002181 ... P62269 41261136
    1055254 9rpv:RS (2.35) BS02 rna N/A GO:0002181 ... P62269 41261136
    1055255 9rpv:RS (2.35) BS03 rna N/A GO:0002181 ... P62269 41261136
    1055256 9rpv:RT (2.35) BS01 rna N/A GO:0000028 ... P39019 41261136
    1055257 9rpv:RU (2.35) BS01 rna N/A GO:0002181 ... P60866 41261136
    1055258 9rpv:RW (2.35) BS01 rna N/A GO:0002181 ... P62244 41261136
    1055259 9rpv:RX (2.35) BS01 rna N/A GO:0002181 ... P62266 41261136
    1055260 9rpv:RY (2.35) BS01 rna N/A GO:0002181 ... P62847 41261136
    1055261 9rpv:RZ (2.35) BS01 rna N/A GO:0002181 ... P62851 41261136
    1055262 9rpv:RZ (2.35) BS02 rna N/A GO:0002181 ... P62851 41261136
    1055263 9rpv:Ra (2.35) BS01 rna N/A GO:0002181 ... P62854 41261136
    1055264 9rpv:Ra (2.35) BS02 MG N/A GO:0002181 ... P62854 41261136
    1055265 9rpv:Rb (2.35) BS01 rna N/A GO:0002181 ... P42677 41261136
    1055266 9rpv:Rc (2.35) BS01 rna N/A GO:0000028 ... P62857 41261136
    1055267 9rpv:Rd (2.35) BS01 rna N/A GO:0002181 ... P62273 41261136
    1055268 9rpv:Rd (2.35) BS02 MG N/A GO:0002181 ... P62273 41261136
    1055269 9rpv:Re (2.35) BS01 rna N/A GO:0002181 ... P62861 41261136
    1055270 9rpv:Rf (2.35) BS01 rna N/A GO:0002181 ... P62979 41261136
    1055271 9rpv:Rg (2.35) BS01 rna N/A GO:0001891 ... P63244 41261136
    1055272 9rpv:SA (2.35) BS01 rna N/A GO:0000028 ... P08865 41261136
    1055273 9rpv:SB (2.35) BS01 rna N/A GO:0002181 ... P61247 41261136
    1055274 9rpv:SC (2.35) BS01 rna N/A GO:0002181 ... P15880 41261136
    1055275 9rpv:SD (2.35) BS01 rna N/A GO:0001228 ... P23396 41261136
    1055276 9rpv:SE (2.35) BS01 rna N/A GO:0002181 ... P62701 41261136
    1055277 9rpv:SF (2.35) BS01 rna N/A GO:0002181 ... P46782 41261136
    1055278 9rpv:SG (2.35) BS01 rna N/A GO:0002181 ... P62753 41261136
    1055279 9rpv:SH (2.35) BS01 rna N/A GO:0002181 ... P62081 41261136
    1055280 9rpv:SI (2.35) BS01 rna N/A GO:0002181 ... P62241 41261136
    1055281 9rpv:SI (2.35) BS02 rna N/A GO:0002181 ... P62241 41261136
    1055282 9rpv:SJ (2.35) BS01 rna N/A GO:0002181 ... P46781 41261136
    1055283 9rpv:SK (2.35) BS01 rna N/A GO:0002181 ... P46783 41261136
    1055284 9rpv:SL (2.35) BS01 rna N/A GO:0002181 ... P62280 41261136
    1055285 9rpv:SN (2.35) BS01 rna N/A GO:0000462 ... P62277 41261136
    1055286 9rpv:SO (2.35) BS01 rna N/A GO:0000028 ... P62263 41261136
    1055287 9rpv:SP (2.35) BS01 rna N/A GO:0000056 ... P62841 41261136
    1055288 9rpv:SP (2.35) BS02 rna N/A GO:0000056 ... P62841 41261136
    1055289 9rpv:SQ (2.35) BS01 rna N/A GO:0000462 ... P62249 41261136
    1055290 9rpv:SR (2.35) BS01 rna N/A GO:0002181 ... P08708 41261136
    1055291 9rpv:SS (2.35) BS01 rna N/A GO:0002181 ... P62269 41261136
    1055292 9rpv:ST (2.35) BS01 rna N/A GO:0000028 ... P39019 41261136
    1055293 9rpv:SU (2.35) BS01 rna N/A GO:0002181 ... P60866 41261136
    1055294 9rpv:SW (2.35) BS01 rna N/A GO:0002181 ... P62244 41261136
    1055295 9rpv:SX (2.35) BS01 rna N/A GO:0002181 ... P62266 41261136
    1055296 9rpv:SY (2.35) BS01 rna N/A GO:0002181 ... P62847 41261136
    1055297 9rpv:SZ (2.35) BS01 rna N/A GO:0002181 ... P62851 41261136
    1055298 9rpv:Sa (2.35) BS01 rna N/A GO:0002181 ... P62854 41261136
    1055299 9rpv:Sa (2.35) BS02 rna N/A GO:0002181 ... P62854 41261136
    1055300 9rpv:Sa (2.35) BS03 ZN N/A GO:0002181 ... P62854 41261136
    1055301 9rpv:Sb (2.35) BS01 rna N/A GO:0002181 ... P42677 41261136
    1055302 9rpv:Sc (2.35) BS01 rna N/A GO:0000028 ... P62857 41261136
    1055303 9rpv:Sd (2.35) BS01 rna N/A GO:0002181 ... P62273 41261136
    1055304 9rpv:Sd (2.35) BS02 ZN N/A GO:0002181 ... P62273 41261136
    1055305 9rpv:Se (2.35) BS01 rna N/A GO:0002181 ... P62861 41261136
    1055306 9rpv:Sf (2.35) BS01 rna N/A GO:0002181 ... P25398 41261136
    1055307 9rpv:Sg (2.35) BS01 rna N/A GO:0001891 ... P63244 41261136
    1055308 9rpv:sh (2.35) BS01 rna N/A GO:0002181 ... P62979 41261136
    1055309 9rpx:A (1.27) BS01 MN N/A GO:0004364 ... A0A086IRG1 41083451
    1055310 9rpx:B (1.27) BS01 R8P N/A GO:0004364 ... A0A086IRG1 41083451
    1055311 9rpx:B (1.27) BS02 MN N/A GO:0004364 ... A0A086IRG1 41083451
    1055312 9rpy:A (1.16) BS01 UIS N/A GO:0004364 ... A0A086IRG1 41083451
    1055313 9rpy:A (1.16) BS02 MN N/A GO:0004364 ... A0A086IRG1 41083451
    1055314 9rpy:B (1.16) BS01 MN N/A GO:0004364 ... A0A086IRG1 41083451
    1055315 9rpz:A (1.11) BS01 MN N/A GO:0004364 ... A0A086IRG1 41083451
    1055316 9rpz:B (1.11) BS01 MN N/A GO:0004364 ... A0A086IRG1 41083451
    1055317 9rq0:A (1.22) BS01 MN N/A GO:0004364 ... A0A086IRG1 41083451
    1055318 9rq0:B (1.22) BS01 A1I4V N/A GO:0004364 ... A0A086IRG1 41083451
    1055319 9rq0:B (1.22) BS02 MN N/A GO:0004364 ... A0A086IRG1 41083451
    1055320 9rq1:A (1.13) BS01 MN N/A GO:0004364 ... A0A086IRG1 41083451
    1055321 9rq1:B (1.13) BS01 R8V N/A GO:0004364 ... A0A086IRG1 41083451
    1055322 9rq1:B (1.13) BS02 MN N/A GO:0004364 ... A0A086IRG1 41083451
    1055323 9rq2:A (1.16) BS01 MN N/A GO:0004364 ... A0A086IRG1 41083451
    1055324 9rq2:B (1.16) BS01 MN N/A GO:0004364 ... A0A086IRG1 41083451
    1055325 9rq3:A (1.22) BS01 MN N/A GO:0004364 ... A0A086IRG1 41083451
    1055326 9rq3:B (1.22) BS01 MN N/A GO:0004364 ... A0A086IRG1 41083451
    1055327 9rq4:A (1.18) BS01 MN N/A GO:0004364 ... A0A086IRG1 41083451
    1055328 9rq4:B (1.18) BS01 MN N/A GO:0004364 ... A0A086IRG1 41083451
    1055329 9rq5:A (1.12) BS01 SYJ N/A GO:0004364 ... A0A086IRG1 41083451
    1055330 9rq5:A (1.12) BS02 MN N/A GO:0004364 ... A0A086IRG1 41083451
    1055331 9rq5:B (1.12) BS01 MN N/A GO:0004364 ... A0A086IRG1 41083451
    1055332 9rq6:A (1.12) BS01 A1JH8 N/A GO:0004364 ... A0A086IRG1 41083451
    1055333 9rq6:A (1.12) BS02 MN N/A GO:0004364 ... A0A086IRG1 41083451
    1055334 9rq6:B (1.12) BS01 A1JH8 N/A GO:0004364 ... A0A086IRG1 41083451
    1055335 9rq6:B (1.12) BS02 MN N/A GO:0004364 ... A0A086IRG1 41083451
    1055336 9rq7:A (1.18) BS01 T9Y N/A GO:0004364 ... A0A086IRG1 41083451
    1055337 9rq7:A (1.18) BS02 MN N/A GO:0004364 ... A0A086IRG1 41083451
    1055338 9rq7:A (1.18) BS03 T9Y N/A GO:0004364 ... A0A086IRG1 41083451
    1055339 9rq7:B (1.18) BS01 T9Y N/A GO:0004364 ... A0A086IRG1 41083451
    1055340 9rq7:B (1.18) BS02 MN N/A GO:0004364 ... A0A086IRG1 41083451
    1055341 9rq8:A (1.16) BS01 MN N/A GO:0004364 ... A0A086IRG1 41083451
    1055342 9rq8:B (1.16) BS01 MN N/A GO:0004364 ... A0A086IRG1 41083451
    1055343 9rq9:A (1.15) BS01 RBJ N/A GO:0004364 ... A0A086IRG1 41083451
    1055344 9rq9:A (1.15) BS02 MN N/A GO:0004364 ... A0A086IRG1 41083451
    1055345 9rq9:B (1.15) BS01 RBJ N/A GO:0004364 ... A0A086IRG1 41083451
    1055346 9rq9:B (1.15) BS02 MN N/A GO:0004364 ... A0A086IRG1 41083451
    1055347 9rqa:A (1.16) BS01 MN N/A GO:0004364 ... A0A086IRG1 41083451
    1055348 9rqa:B (1.16) BS01 UI4 N/A GO:0004364 ... A0A086IRG1 41083451
    1055349 9rqa:B (1.16) BS02 MN N/A GO:0004364 ... A0A086IRG1 41083451
    1055350 9rqb:A (1.27) BS01 A1JH7 N/A GO:0004364 ... A0A086IRG1 41083451
    1055351 9rqb:A (1.27) BS02 MN N/A GO:0004364 ... A0A086IRG1 41083451
    1055352 9rqb:B (1.27) BS01 MN N/A GO:0004364 ... A0A086IRG1 41083451
    1055353 9rqc:A (1.15) BS01 RCV N/A GO:0004364 ... A0A086IRG1 41083451
    1055354 9rqc:A (1.15) BS02 MN N/A GO:0004364 ... A0A086IRG1 41083451
    1055355 9rqc:B (1.15) BS01 RCV N/A GO:0004364 ... A0A086IRG1 41083451
    1055356 9rqc:B (1.15) BS02 MN N/A GO:0004364 ... A0A086IRG1 41083451
    1055357 9rqd:A (1.17) BS01 RD4 N/A GO:0004364 ... A0A086IRG1 41083451
    1055358 9rqd:A (1.17) BS02 RD4 N/A GO:0004364 ... A0A086IRG1 41083451
    1055359 9rqd:A (1.17) BS03 MN N/A GO:0004364 ... A0A086IRG1 41083451
    1055360 9rqd:B (1.17) BS01 RD4 N/A GO:0004364 ... A0A086IRG1 41083451
    1055361 9rqd:B (1.17) BS02 MN N/A GO:0004364 ... A0A086IRG1 41083451
    1055362 9rqe:A (1.16) BS01 UI7 N/A GO:0004364 ... A0A086IRG1 41083451
    1055363 9rqe:A (1.16) BS02 MN N/A GO:0004364 ... A0A086IRG1 41083451
    1055364 9rqe:B (1.16) BS01 MN N/A GO:0004364 ... A0A086IRG1 41083451
    1055365 9rqf:A (1.13) BS01 UID N/A GO:0004364 ... A0A086IRG1 41083451
    1055366 9rqf:A (1.13) BS02 UID N/A GO:0004364 ... A0A086IRG1 41083451
    1055367 9rqf:A (1.13) BS03 MN N/A GO:0004364 ... A0A086IRG1 41083451
    1055368 9rqf:B (1.13) BS01 MN N/A GO:0004364 ... A0A086IRG1 41083451
    1055369 9rqg:A (1.16) BS01 U8X N/A GO:0004364 ... A0A086IRG1 41083451
    1055370 9rqg:A (1.16) BS02 MN N/A GO:0004364 ... A0A086IRG1 41083451
    1055371 9rqg:B (1.16) BS01 U8X N/A GO:0004364 ... A0A086IRG1 41083451
    1055372 9rqg:B (1.16) BS02 MN N/A GO:0004364 ... A0A086IRG1 41083451
    1055373 9rqh:A (1.15) BS01 SZA N/A GO:0004364 ... A0A086IRG1 41083451
    1055374 9rqh:A (1.15) BS02 SZA N/A GO:0004364 ... A0A086IRG1 41083451
    1055375 9rqh:A (1.15) BS03 MN N/A GO:0004364 ... A0A086IRG1 41083451
    1055376 9rqh:B (1.15) BS01 MN N/A GO:0004364 ... A0A086IRG1 41083451
    1055377 9rqk:A (1.722) BS01 A1JIE N/A N/A N/A 41621223
    1055378 9rqk:A (1.722) BS02 ZN N/A N/A N/A 41621223
    1055379 9rqq:A (1.89) BS01 A1JIF N/A N/A Q9H2K2 41455111
    1055380 9rqq:A (1.89) BS02 ZN N/A N/A Q9H2K2 41455111
    1055381 9rqt:a (2.88) BS01 dna N/A GO:0000166 ... Q89269 41790558
    1055382 9rqt:a (2.88) BS02 AGS N/A GO:0000166 ... Q89269 41790558
    1055383 9rqt:b (2.88) BS01 dna N/A GO:0000166 ... Q89269 41790558
    1055384 9rqt:b (2.88) BS02 AGS N/A GO:0000166 ... Q89269 41790558
    1055385 9rqt:b (2.88) BS03 AGS N/A GO:0000166 ... Q89269 41790558
    1055386 9rqt:c (2.88) BS01 dna N/A GO:0000166 ... Q89269 41790558
    1055387 9rqt:c (2.88) BS02 AGS N/A GO:0000166 ... Q89269 41790558
    1055388 9rqt:c (2.88) BS03 ADP N/A GO:0000166 ... Q89269 41790558
    1055389 9rqt:d (2.88) BS01 ADP N/A GO:0000166 ... Q89269 41790558
    1055390 9rqt:g (2.88) BS01 dna N/A GO:0000166 ... Q89269 41790558
    1055391 9rrp:A (2.05) BS01 A1JI1 N/A N/A Q9H2K2 41455111
    1055392 9rrp:A (2.05) BS02 ZN N/A N/A Q9H2K2 41455111
    1055393 9rrs:B (1.88) BS01 ADP N/A GO:0000166 ... Q8JQF8 41790558
    1055394 9rrs:B (1.88) BS02 MG N/A GO:0000166 ... Q8JQF8 41790558
    1055395 9rry:A (1.91) BS01 A1JJA N/A N/A Q86U44 N/A
    1055396 9rry:B (1.91) BS01 A1JJA N/A N/A Q9HCE5 N/A
    1055397 9rs0:A (2.0) BS01 A1JI8 N/A N/A Q86U44 N/A
    1055398 9rs0:B (2.0) BS01 A1JI8 N/A N/A Q9HCE5 N/A
    1055399 9rs1:A (1.73) BS01 SAH N/A N/A Q86U44 N/A
    1055400 9rs1:B (1.73) BS01 A1JI8 N/A N/A Q9HCE5 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).