SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1055601 9rup:c (4.11) BS01 peptide N/A N/A A0A0D6K978 N/A
    1055602 9rur:A (2.296) BS01 AGS N/A GO:0003676 ... Q14191 41038585
    1055603 9rur:A (2.296) BS02 A1JJK N/A GO:0003676 ... Q14191 41038585
    1055604 9rur:A (2.296) BS03 ADP N/A GO:0003676 ... Q14191 41038585
    1055605 9rur:A (2.296) BS04 ZN N/A GO:0003676 ... Q14191 41038585
    1055606 9rur:B (2.296) BS01 AGS N/A GO:0003676 ... Q14191 41038585
    1055607 9rur:B (2.296) BS02 ZN N/A GO:0003676 ... Q14191 41038585
    1055608 9rus:A (2.193) BS01 AGS N/A GO:0003676 ... Q14191 41038585
    1055609 9rus:A (2.193) BS02 GQP N/A GO:0003676 ... Q14191 41038585
    1055610 9rus:A (2.193) BS03 ADP N/A GO:0003676 ... Q14191 41038585
    1055611 9rus:A (2.193) BS04 ZN N/A GO:0003676 ... Q14191 41038585
    1055612 9rus:B (2.193) BS01 AGS N/A GO:0003676 ... Q14191 41038585
    1055613 9rus:B (2.193) BS02 ADP N/A GO:0003676 ... Q14191 41038585
    1055614 9rus:B (2.193) BS03 ZN N/A GO:0003676 ... Q14191 41038585
    1055615 9ruv:AAA (2.12) BS01 RH N/A GO:0003796 ... P00698 40724832
    1055616 9ruv:AAA (2.12) BS02 RH N/A GO:0003796 ... P00698 40724832
    1055617 9ruv:AAA (2.12) BS03 RH N/A GO:0003796 ... P00698 40724832
    1055618 9ruv:AAA (2.12) BS04 NA N/A GO:0003796 ... P00698 40724832
    1055619 9rv5:A (1.75) BS01 peptide N/A N/A Q99619 N/A
    1055620 9rv5:C (1.75) BS01 peptide N/A N/A Q99619 N/A
    1055621 9rvp:A (1.9) BS01 rna N/A N/A B4YYP2 N/A
    1055622 9rvy:C (3.0) BS01 rna N/A N/A N/A N/A
    1055623 9rvy:C (3.0) BS02 rna N/A N/A N/A N/A
    1055624 9rvy:D (3.0) BS01 rna N/A N/A N/A N/A
    1055625 9rvy:D (3.0) BS02 rna N/A N/A N/A N/A
    1055626 9rvz:C (3.2) BS01 rna N/A N/A N/A N/A
    1055627 9rvz:C (3.2) BS02 rna N/A N/A N/A N/A
    1055628 9rvz:D (3.2) BS01 rna N/A N/A N/A N/A
    1055629 9rvz:D (3.2) BS02 rna N/A N/A N/A N/A
    1055630 9rw0:C (3.4) BS01 rna N/A N/A N/A N/A
    1055631 9rw0:C (3.4) BS02 rna N/A N/A N/A N/A
    1055632 9rw0:D (3.4) BS01 rna N/A N/A N/A N/A
    1055633 9rw0:D (3.4) BS02 rna N/A N/A N/A N/A
    1055634 9rw1:C (3.7) BS01 rna N/A N/A N/A N/A
    1055635 9rw1:C (3.7) BS02 rna N/A N/A N/A N/A
    1055636 9rw1:D (3.7) BS01 rna N/A N/A N/A N/A
    1055637 9rw1:D (3.7) BS02 rna N/A N/A N/A N/A
    1055638 9rw2:C (3.6) BS01 rna N/A N/A N/A N/A
    1055639 9rw2:C (3.6) BS02 rna N/A N/A N/A N/A
    1055640 9rw2:D (3.6) BS01 rna N/A N/A N/A N/A
    1055641 9rw2:D (3.6) BS02 rna N/A N/A N/A N/A
    1055642 9rw3:C (3.2) BS01 rna N/A N/A N/A N/A
    1055643 9rw3:C (3.2) BS02 rna N/A N/A N/A N/A
    1055644 9rw3:D (3.2) BS01 rna N/A N/A N/A N/A
    1055645 9rw3:D (3.2) BS02 rna N/A N/A N/A N/A
    1055646 9rw4:C (3.9) BS01 rna N/A N/A N/A N/A
    1055647 9rw4:C (3.9) BS02 rna N/A N/A N/A N/A
    1055648 9rw4:D (3.9) BS01 rna N/A N/A N/A N/A
    1055649 9rw4:D (3.9) BS02 rna N/A N/A N/A N/A
    1055650 9rw5:C (4.1) BS01 rna N/A N/A N/A N/A
    1055651 9rw5:C (4.1) BS02 rna N/A N/A N/A N/A
    1055652 9rw5:D (4.1) BS01 rna N/A N/A N/A N/A
    1055653 9rw5:D (4.1) BS02 rna N/A N/A N/A N/A
    1055654 9rw6:C (3.4) BS01 rna N/A N/A N/A N/A
    1055655 9rw6:C (3.4) BS02 rna N/A N/A N/A N/A
    1055656 9rw6:D (3.4) BS01 rna N/A N/A N/A N/A
    1055657 9rw6:D (3.4) BS02 rna N/A N/A N/A N/A
    1055658 9rw7:C (3.4) BS01 rna N/A N/A N/A N/A
    1055659 9rw7:C (3.4) BS02 rna N/A N/A N/A N/A
    1055660 9rw7:D (3.4) BS01 rna N/A N/A N/A N/A
    1055661 9rw7:D (3.4) BS02 rna N/A N/A N/A N/A
    1055662 9rw8:C (4.4) BS01 rna N/A N/A N/A N/A
    1055663 9rw8:C (4.4) BS02 rna N/A N/A N/A N/A
    1055664 9rw8:D (4.4) BS01 rna N/A N/A N/A N/A
    1055665 9rw8:D (4.4) BS02 rna N/A N/A N/A N/A
    1055666 9rw9:C (4.2) BS01 rna N/A N/A N/A N/A
    1055667 9rw9:C (4.2) BS02 rna N/A N/A N/A N/A
    1055668 9rw9:D (4.2) BS01 rna N/A N/A N/A N/A
    1055669 9rw9:D (4.2) BS02 rna N/A N/A N/A N/A
    1055670 9rwa:C (3.9) BS01 rna N/A N/A N/A N/A
    1055671 9rwa:C (3.9) BS02 rna N/A N/A N/A N/A
    1055672 9rwa:D (3.9) BS01 rna N/A N/A N/A N/A
    1055673 9rwa:D (3.9) BS02 rna N/A N/A N/A N/A
    1055674 9rwb:C (3.4) BS01 rna N/A N/A N/A N/A
    1055675 9rwb:D (3.4) BS01 rna N/A N/A N/A N/A
    1055676 9rwg:A (2.19) BS01 peptide N/A GO:0000166 ... Q8JQF8 41790558
    1055677 9rwg:A (2.19) BS02 ADP N/A GO:0000166 ... Q8JQF8 41790558
    1055678 9rwg:A (2.19) BS03 MG N/A GO:0000166 ... Q8JQF8 41790558
    1055679 9rwg:F (2.19) BS01 ADP N/A GO:0000166 ... Q8JQF8 41790558
    1055680 9rwg:F (2.19) BS02 MG N/A GO:0000166 ... Q8JQF8 41790558
    1055681 9rwg:G (2.19) BS01 peptide N/A GO:0000166 ... Q8JQF8 41790558
    1055682 9rwg:G (2.19) BS02 ADP N/A GO:0000166 ... Q8JQF8 41790558
    1055683 9rwg:G (2.19) BS03 MG N/A GO:0000166 ... Q8JQF8 41790558
    1055684 9rwg:H (2.19) BS01 peptide N/A GO:0000166 ... Q8JQF8 41790558
    1055685 9rwg:H (2.19) BS02 ADP N/A GO:0000166 ... Q8JQF8 41790558
    1055686 9rwg:H (2.19) BS03 MG N/A GO:0000166 ... Q8JQF8 41790558
    1055687 9rwg:Q (2.19) BS01 ADP N/A GO:0000166 ... Q8JQF8 41790558
    1055688 9rwg:Q (2.19) BS02 MG N/A GO:0000166 ... Q8JQF8 41790558
    1055689 9rwg:R (2.19) BS01 peptide N/A GO:0000166 ... Q8JQF8 41790558
    1055690 9rwg:R (2.19) BS02 ADP N/A GO:0000166 ... Q8JQF8 41790558
    1055691 9rwg:R (2.19) BS03 MG N/A GO:0000166 ... Q8JQF8 41790558
    1055692 9rwg:U (2.19) BS01 peptide N/A GO:0000166 ... Q8JQF8 41790558
    1055693 9rwg:U (2.19) BS02 ADP N/A GO:0000166 ... Q8JQF8 41790558
    1055694 9rwg:U (2.19) BS03 MG N/A GO:0000166 ... Q8JQF8 41790558
    1055695 9rwg:V (2.19) BS01 peptide N/A GO:0000166 ... Q8JQF8 41790558
    1055696 9rwg:V (2.19) BS02 ADP N/A GO:0000166 ... Q8JQF8 41790558
    1055697 9rwg:V (2.19) BS03 MG N/A GO:0000166 ... Q8JQF8 41790558
    1055698 9rwg:W (2.19) BS01 peptide N/A GO:0000166 ... Q8JQF8 41790558
    1055699 9rwg:W (2.19) BS02 ADP N/A GO:0000166 ... Q8JQF8 41790558
    1055700 9rwg:W (2.19) BS03 MG N/A GO:0000166 ... Q8JQF8 41790558
    1055701 9rwg:X (2.19) BS01 peptide N/A GO:0000166 ... Q8JQF8 41790558
    1055702 9rwg:X (2.19) BS02 ADP N/A GO:0000166 ... Q8JQF8 41790558
    1055703 9rwg:X (2.19) BS03 MG N/A GO:0000166 ... Q8JQF8 41790558
    1055704 9rwg:c (2.19) BS01 ADP N/A N/A P03132 41790558
    1055705 9rwg:e (2.19) BS01 ADP N/A N/A P03132 41790558
    1055706 9rwp:A (3.69) BS01 ADP N/A N/A N/A 41310978
    1055707 9rwp:B (3.69) BS01 ADP N/A N/A N/A 41310978
    1055708 9rwp:C (3.69) BS01 ADP N/A N/A N/A 41310978
    1055709 9rwp:D (3.69) BS01 ADP N/A N/A N/A 41310978
    1055710 9rwp:E (3.69) BS01 ADP N/A N/A N/A 41310978
    1055711 9rwp:F (3.69) BS01 ADP N/A N/A N/A 41310978
    1055712 9rwp:G (3.69) BS01 ADP N/A N/A N/A 41310978
    1055713 9rwp:H (3.69) BS01 ADP N/A N/A N/A 41310978
    1055714 9rwp:I (3.69) BS01 ADP N/A N/A N/A 41310978
    1055715 9rwp:J (3.69) BS01 ADP N/A N/A N/A 41310978
    1055716 9rwp:K (3.69) BS01 ADP N/A N/A N/A 41310978
    1055717 9rwp:L (3.69) BS01 ADP N/A N/A N/A 41310978
    1055718 9rwp:M (3.69) BS01 ADP N/A N/A N/A 41310978
    1055719 9rwp:N (3.69) BS01 ADP N/A N/A N/A 41310978
    1055720 9rwp:O (3.69) BS01 ADP N/A N/A N/A 41310978
    1055721 9rwp:P (3.69) BS01 ADP N/A N/A N/A 41310978
    1055722 9rwz:A (3.1) BS01 rna N/A N/A N/A N/A
    1055723 9rwz:A (3.1) BS02 rna N/A N/A N/A N/A
    1055724 9rwz:M (3.1) BS01 ZN N/A N/A N/A N/A
    1055725 9rwz:N (3.1) BS01 rna N/A N/A N/A N/A
    1055726 9rwz:N (3.1) BS02 ZN N/A N/A N/A N/A
    1055727 9rxf:A (1.4) BS01 FMN N/A GO:0005515 ... P0A3E0 41106744
    1055728 9rxf:B (1.4) BS01 FMN N/A GO:0005515 ... P0A3E0 41106744
    1055729 9rxg:A (2.62) BS01 HEM N/A GO:0005344 ... P01966 N/A
    1055730 9rxg:B (2.62) BS01 HEM N/A GO:0005344 ... P02070 N/A
    1055731 9rxg:C (2.62) BS01 HEM N/A GO:0005344 ... P01966 N/A
    1055732 9rxg:D (2.62) BS01 HEM N/A GO:0005344 ... P02070 N/A
    1055733 9rxh:B (1.83) BS01 HEM N/A GO:0004497 ... A0A657XIU7 41125001
    1055734 9rxh:B (1.83) BS02 ELA N/A GO:0004497 ... A0A657XIU7 41125001
    1055735 9rxl:C (1.46) BS01 peptide N/A N/A P0DTC9 41685809
    1055736 9rxl:C (1.46) BS02 peptide N/A N/A P0DTC9 41685809
    1055737 9rxl:C (1.46) BS03 LFI N/A N/A P0DTC9 41685809
    1055738 9rxl:D (1.46) BS01 peptide N/A N/A P0DTC9 41685809
    1055739 9rxl:D (1.46) BS02 peptide N/A N/A P0DTC9 41685809
    1055740 9rxl:D (1.46) BS03 LFI N/A N/A P0DTC9 41685809
    1055741 9rxm:A (3.0) BS01 peptide N/A N/A N/A N/A
    1055742 9rxm:B (3.0) BS01 peptide N/A N/A N/A N/A
    1055743 9rxm:E (3.0) BS01 peptide N/A GO:0000139 ... A7WPI8 N/A
    1055744 9ryg:A (1.791) BS01 A1JKI N/A GO:0005856 ... Q9L9F0 N/A
    1055745 9ryg:A (1.791) BS02 FE N/A GO:0005856 ... Q9L9F0 N/A
    1055746 9ryg:B (1.791) BS01 A1JKI N/A GO:0005856 ... Q9L9F0 N/A
    1055747 9ryg:B (1.791) BS02 A1JKI N/A GO:0005856 ... Q9L9F0 N/A
    1055748 9ryg:B (1.791) BS03 FE N/A GO:0005856 ... Q9L9F0 N/A
    1055749 9ryg:C (1.791) BS01 A1JKI N/A GO:0005856 ... Q9L9F0 N/A
    1055750 9ryg:C (1.791) BS02 A1JKI N/A GO:0005856 ... Q9L9F0 N/A
    1055751 9ryg:C (1.791) BS03 FE N/A GO:0005856 ... Q9L9F0 N/A
    1055752 9ryg:D (1.791) BS01 A1JKI N/A GO:0005856 ... Q9L9F0 N/A
    1055753 9ryg:D (1.791) BS02 A1JKI N/A GO:0005856 ... Q9L9F0 N/A
    1055754 9ryg:D (1.791) BS03 FE N/A GO:0005856 ... Q9L9F0 N/A
    1055755 9rzc:O (3.66) BS01 peptide N/A GO:0005634 ... Q9BYW2 41162378
    1055756 9rzc:a (3.66) BS01 dna N/A GO:0000786 ... Q71DI3 41162378
    1055757 9rzc:a (3.66) BS02 dna N/A GO:0000786 ... Q71DI3 41162378
    1055758 9rzc:b (3.66) BS01 dna N/A GO:0000781 ... P62805 41162378
    1055759 9rzc:b (3.66) BS02 dna N/A GO:0000781 ... P62805 41162378
    1055760 9rzc:c (3.66) BS01 dna N/A GO:0000786 ... P04908 41162378
    1055761 9rzc:c (3.66) BS02 dna N/A GO:0000786 ... P04908 41162378
    1055762 9rzc:d (3.66) BS01 dna N/A GO:0000786 ... O60814 41162378
    1055763 9rzc:d (3.66) BS02 dna N/A GO:0000786 ... O60814 41162378
    1055764 9rzc:e (3.66) BS01 dna N/A GO:0000786 ... Q71DI3 41162378
    1055765 9rzc:e (3.66) BS02 dna N/A GO:0000786 ... Q71DI3 41162378
    1055766 9rzc:f (3.66) BS01 dna N/A GO:0000781 ... P62805 41162378
    1055767 9rzc:f (3.66) BS02 dna N/A GO:0000781 ... P62805 41162378
    1055768 9rzc:g (3.66) BS01 dna N/A GO:0000786 ... P04908 41162378
    1055769 9rzc:g (3.66) BS02 dna N/A GO:0000786 ... P04908 41162378
    1055770 9rzc:g (3.66) BS03 peptide N/A GO:0000786 ... P04908 41162378
    1055771 9rzc:h (3.66) BS01 dna N/A GO:0000786 ... O60814 41162378
    1055772 9rzc:h (3.66) BS02 peptide N/A GO:0000786 ... O60814 41162378
    1055773 9rzd:M (3.69) BS01 peptide N/A GO:0003676 ... Q7KZ85 41162378
    1055774 9rze:A (8.53) BS01 rna N/A N/A A0A8D1DPV6 41162378
    1055775 9rze:A (8.53) BS02 dna N/A N/A A0A8D1DPV6 41162378
    1055776 9rze:A (8.53) BS03 dna N/A N/A A0A8D1DPV6 41162378
    1055777 9rze:A (8.53) BS04 ZN N/A N/A A0A8D1DPV6 41162378
    1055778 9rze:A (8.53) BS05 MG N/A N/A A0A8D1DPV6 41162378
    1055779 9rze:B (8.53) BS01 rna N/A N/A I3LGP4 41162378
    1055780 9rze:B (8.53) BS02 dna N/A N/A I3LGP4 41162378
    1055781 9rze:B (8.53) BS03 ZN N/A N/A I3LGP4 41162378
    1055782 9rze:C (8.53) BS01 ZN N/A N/A I3LCH3 41162378
    1055783 9rze:E (8.53) BS01 dna N/A N/A I3LSI7 41162378
    1055784 9rze:I (8.53) BS01 ZN N/A N/A P60899 41162378
    1055785 9rze:I (8.53) BS02 ZN N/A N/A P60899 41162378
    1055786 9rze:J (8.53) BS01 ZN N/A N/A A0A4X1VYD0 41162378
    1055787 9rze:L (8.53) BS01 ZN N/A N/A A0A8D0JYF1 41162378
    1055788 9rze:M (8.53) BS01 rna N/A N/A Q7KZ85 41162378
    1055789 9rze:Y (8.53) BS01 ZN N/A N/A Q4R941 41162378
    1055790 9rze:Z (8.53) BS01 rna N/A N/A O00267 41162378
    1055791 9rze:a (8.53) BS01 dna N/A N/A Q71DI3 41162378
    1055792 9rze:a (8.53) BS02 dna N/A N/A Q71DI3 41162378
    1055793 9rze:b (8.53) BS01 dna N/A N/A P62805 41162378
    1055794 9rze:b (8.53) BS02 dna N/A N/A P62805 41162378
    1055795 9rze:c (8.53) BS01 dna N/A N/A P04908 41162378
    1055796 9rze:c (8.53) BS02 dna N/A N/A P04908 41162378
    1055797 9rze:d (8.53) BS01 dna N/A N/A O60814 41162378
    1055798 9rze:d (8.53) BS02 dna N/A N/A O60814 41162378
    1055799 9rze:e (8.53) BS01 dna N/A N/A Q71DI3 41162378
    1055800 9rze:e (8.53) BS02 dna N/A N/A Q71DI3 41162378

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).