SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1055801 9rze:f (8.53) BS01 dna N/A N/A P62805 41162378
    1055802 9rze:g (8.53) BS01 dna N/A N/A P04908 41162378
    1055803 9rze:g (8.53) BS02 peptide N/A N/A P04908 41162378
    1055804 9rze:g (8.53) BS03 dna N/A N/A P04908 41162378
    1055805 9rze:h (8.53) BS01 peptide N/A N/A O60814 41162378
    1055806 9rzr:A (1.27) BS01 A1JKF N/A GO:0003796 ... P00698 40985763
    1055807 9rzs:A (1.68) BS01 A1JKB N/A GO:0003796 ... P00698 40985763
    1055808 9rzt:A (1.73) BS01 A1JKC N/A GO:0003796 ... P00698 40985763
    1055809 9rzz:A (1.7) BS01 A1JKN N/A GO:0004735 ... P32322 41016381
    1055810 9rzz:A (1.7) BS02 A1JKN N/A GO:0004735 ... P32322 41016381
    1055811 9rzz:B (1.7) BS01 A1JKN N/A GO:0004735 ... P32322 41016381
    1055812 9rzz:B (1.7) BS02 A1JKN N/A GO:0004735 ... P32322 41016381
    1055813 9rzz:C (1.7) BS01 A1JKN N/A GO:0004735 ... P32322 41016381
    1055814 9rzz:C (1.7) BS02 A1JKN N/A GO:0004735 ... P32322 41016381
    1055815 9rzz:D (1.7) BS01 A1JKN N/A GO:0004735 ... P32322 41016381
    1055816 9rzz:D (1.7) BS02 A1JKN N/A GO:0004735 ... P32322 41016381
    1055817 9rzz:E (1.7) BS01 A1JKN N/A GO:0004735 ... P32322 41016381
    1055818 9s02:A (1.65) BS01 R9M N/A GO:0004735 ... P32322 41016381
    1055819 9s02:A (1.65) BS02 R9M N/A GO:0004735 ... P32322 41016381
    1055820 9s02:B (1.65) BS01 R9M N/A GO:0004735 ... P32322 41016381
    1055821 9s02:B (1.65) BS02 R9M N/A GO:0004735 ... P32322 41016381
    1055822 9s02:C (1.65) BS01 R9M N/A GO:0004735 ... P32322 41016381
    1055823 9s02:C (1.65) BS02 R9M N/A GO:0004735 ... P32322 41016381
    1055824 9s02:D (1.65) BS01 R9M N/A GO:0004735 ... P32322 41016381
    1055825 9s02:D (1.65) BS02 R9M N/A GO:0004735 ... P32322 41016381
    1055826 9s02:E (1.65) BS01 R9M N/A GO:0004735 ... P32322 41016381
    1055827 9s04:A (1.57) BS01 A1JKQ N/A GO:0004735 ... P32322 41016381
    1055828 9s04:B (1.57) BS01 A1JKQ N/A GO:0004735 ... P32322 41016381
    1055829 9s04:C (1.57) BS01 A1JKQ N/A GO:0004735 ... P32322 41016381
    1055830 9s04:D (1.57) BS01 A1JKQ N/A GO:0004735 ... P32322 41016381
    1055831 9s04:E (1.57) BS01 A1JKQ N/A GO:0004735 ... P32322 41016381
    1055832 9s06:A (2.05) BS01 B12 N/A N/A Q746J7 41639453
    1055833 9s06:B (2.05) BS01 B12 N/A N/A Q746J7 41639453
    1055834 9s06:C (2.05) BS01 B12 N/A N/A Q746J7 41639453
    1055835 9s06:D (2.05) BS01 B12 N/A N/A Q746J7 41639453
    1055836 9s07:A (2.6) BS01 B12 N/A N/A Q746J7 41639453
    1055837 9s07:B (2.6) BS01 B12 N/A N/A Q746J7 41639453
    1055838 9s07:C (2.6) BS01 B12 N/A N/A Q746J7 41639453
    1055839 9s07:D (2.6) BS01 B12 N/A N/A Q746J7 41639453
    1055840 9s08:A (2.3) BS01 B12 N/A N/A Q746J7 41639453
    1055841 9s08:B (2.3) BS01 B12 N/A N/A Q746J7 41639453
    1055842 9s08:C (2.3) BS01 B12 N/A N/A Q746J7 41639453
    1055843 9s08:D (2.3) BS01 B12 N/A N/A Q746J7 41639453
    1055844 9s09:A (2.3) BS01 B12 N/A N/A Q746J7 41639453
    1055845 9s09:B (2.3) BS01 B12 N/A N/A Q746J7 41639453
    1055846 9s09:C (2.3) BS01 B12 N/A N/A Q746J7 41639453
    1055847 9s09:D (2.3) BS01 B12 N/A N/A Q746J7 41639453
    1055848 9s0a:A (2.3) BS01 B12 N/A N/A Q746J7 41639453
    1055849 9s0a:B (2.3) BS01 B12 N/A N/A Q746J7 41639453
    1055850 9s0a:C (2.3) BS01 B12 N/A N/A Q746J7 41639453
    1055851 9s0a:D (2.3) BS01 B12 N/A N/A Q746J7 41639453
    1055852 9s0b:A (2.35) BS01 B12 N/A N/A Q746J7 41639453
    1055853 9s0b:B (2.35) BS01 B12 N/A N/A Q746J7 41639453
    1055854 9s0b:C (2.35) BS01 B12 N/A N/A Q746J7 41639453
    1055855 9s0b:D (2.35) BS01 B12 N/A N/A Q746J7 41639453
    1055856 9s0c:A (2.28) BS01 B12 N/A N/A Q746J7 41639453
    1055857 9s0c:B (2.28) BS01 B12 N/A N/A Q746J7 41639453
    1055858 9s0c:C (2.28) BS01 B12 N/A N/A Q746J7 41639453
    1055859 9s0c:D (2.28) BS01 B12 N/A N/A Q746J7 41639453
    1055860 9s0d:A (2.3) BS01 B12 N/A N/A Q746J7 41639453
    1055861 9s0d:B (2.3) BS01 B12 N/A N/A Q746J7 41639453
    1055862 9s0d:C (2.3) BS01 B12 N/A N/A Q746J7 41639453
    1055863 9s0d:D (2.3) BS01 B12 N/A N/A Q746J7 41639453
    1055864 9s0e:A (2.25) BS01 B12 N/A N/A Q746J7 41639453
    1055865 9s0e:B (2.25) BS01 B12 N/A N/A Q746J7 41639453
    1055866 9s0e:C (2.25) BS01 B12 N/A N/A Q746J7 41639453
    1055867 9s0e:D (2.25) BS01 B12 N/A N/A Q746J7 41639453
    1055868 9s0f:A (2.35) BS01 B12 N/A N/A Q746J7 41639453
    1055869 9s0f:B (2.35) BS01 B12 N/A N/A Q746J7 41639453
    1055870 9s0f:C (2.35) BS01 B12 N/A N/A Q746J7 41639453
    1055871 9s0f:D (2.35) BS01 B12 N/A N/A Q746J7 41639453
    1055872 9s0g:A (1.9) BS01 B12 N/A N/A Q746J7 41639453
    1055873 9s0g:B (1.9) BS01 B12 N/A N/A Q746J7 41639453
    1055874 9s0g:C (1.9) BS01 B12 N/A N/A Q746J7 41639453
    1055875 9s0g:D (1.9) BS01 B12 N/A N/A Q746J7 41639453
    1055876 9s0h:A (2.0) BS01 B12 N/A N/A Q746J7 41639453
    1055877 9s0h:B (2.0) BS01 B12 N/A N/A Q746J7 41639453
    1055878 9s0h:C (2.0) BS01 B12 N/A N/A Q746J7 41639453
    1055879 9s0h:D (2.0) BS01 B12 N/A N/A Q746J7 41639453
    1055880 9s0i:A (2.2) BS01 B12 N/A N/A Q746J7 41639453
    1055881 9s0i:B (2.2) BS01 B12 N/A N/A Q746J7 41639453
    1055882 9s0i:C (2.2) BS01 B12 N/A N/A Q746J7 41639453
    1055883 9s0i:D (2.2) BS01 B12 N/A N/A Q746J7 41639453
    1055884 9s0j:A (2.9) BS01 B12 N/A N/A Q746J7 41639453
    1055885 9s0j:B (2.9) BS01 B12 N/A N/A Q746J7 41639453
    1055886 9s0j:C (2.9) BS01 B12 N/A N/A Q746J7 41639453
    1055887 9s0j:D (2.9) BS01 B12 N/A N/A Q746J7 41639453
    1055888 9s0m:A (2.85) BS01 ZN N/A N/A P0DTD1 41502823
    1055889 9s0m:A (2.85) BS02 ZN N/A N/A P0DTD1 41502823
    1055890 9s0m:A (2.85) BS03 ZN N/A N/A P0DTD1 41502823
    1055891 9s0m:A (2.85) BS04 A1JKS N/A N/A P0DTD1 41502823
    1055892 9s0m:B (2.85) BS01 ZN N/A N/A P0DTD1 41502823
    1055893 9s0m:B (2.85) BS02 ZN N/A N/A P0DTD1 41502823
    1055894 9s0m:B (2.85) BS03 ZN N/A N/A P0DTD1 41502823
    1055895 9s0m:B (2.85) BS04 A1JKS N/A N/A P0DTD1 41502823
    1055896 9s0n:a (3.08) BS01 AGS N/A GO:0000166 ... Q89269 41790558
    1055897 9s0n:b (3.08) BS01 AGS N/A GO:0000166 ... Q89269 41790558
    1055898 9s0n:b (3.08) BS02 AGS N/A GO:0000166 ... Q89269 41790558
    1055899 9s0n:c (3.08) BS01 dna N/A GO:0000166 ... Q89269 41790558
    1055900 9s0n:c (3.08) BS02 AGS N/A GO:0000166 ... Q89269 41790558
    1055901 9s0n:f (3.08) BS01 dna N/A GO:0000166 ... Q89269 41790558
    1055902 9s0n:f (3.08) BS02 AGS N/A GO:0000166 ... Q89269 41790558
    1055903 9s0o:A (1.514) BS01 A1JKT N/A N/A O43598 41531952
    1055904 9s0o:A (1.514) BS02 A1JKT N/A N/A O43598 41531952
    1055905 9s0o:B (1.514) BS01 A1JKT N/A N/A O43598 41531952
    1055906 9s0o:B (1.514) BS02 A1JKT N/A N/A O43598 41531952
    1055907 9s0t:A (2.05) BS01 GLC N/A N/A P42212 41255130
    1055908 9s0t:A (2.05) BS02 GLC N/A N/A P42212 41255130
    1055909 9s0t:A (2.05) BS03 GLC N/A N/A P42212 41255130
    1055910 9s0t:B (2.05) BS01 GLC N/A N/A P42212 41255130
    1055911 9s0t:B (2.05) BS02 GLC N/A N/A P42212 41255130
    1055912 9s0u:A (6.72) BS01 rna N/A GO:0001172 ... A0A8D1DPV6 41162378
    1055913 9s0u:A (6.72) BS02 dna N/A GO:0001172 ... A0A8D1DPV6 41162378
    1055914 9s0u:A (6.72) BS03 dna N/A GO:0001172 ... A0A8D1DPV6 41162378
    1055915 9s0u:A (6.72) BS04 ZN N/A GO:0001172 ... A0A8D1DPV6 41162378
    1055916 9s0u:A (6.72) BS05 MG N/A GO:0001172 ... A0A8D1DPV6 41162378
    1055917 9s0u:B (6.72) BS01 rna N/A GO:0000781 ... I3LGP4 41162378
    1055918 9s0u:B (6.72) BS02 dna N/A GO:0000781 ... I3LGP4 41162378
    1055919 9s0u:B (6.72) BS03 ZN N/A GO:0000781 ... I3LGP4 41162378
    1055920 9s0u:C (6.72) BS01 ZN N/A GO:0003677 ... I3LCH3 41162378
    1055921 9s0u:E (6.72) BS01 dna N/A GO:0003677 ... I3LSI7 41162378
    1055922 9s0u:I (6.72) BS01 ZN N/A GO:0001193 ... P60899 41162378
    1055923 9s0u:I (6.72) BS02 ZN N/A GO:0001193 ... P60899 41162378
    1055924 9s0u:J (6.72) BS01 ZN N/A GO:0003677 ... A0A4X1VYD0 41162378
    1055925 9s0u:L (6.72) BS01 ZN N/A GO:0001650 ... A0A8D0JYF1 41162378
    1055926 9s0u:M (6.72) BS01 rna N/A GO:0003676 ... Q7KZ85 41162378
    1055927 9s0u:O (6.72) BS01 peptide N/A GO:0005634 ... Q9BYW2 41162378
    1055928 9s0u:Y (6.72) BS01 ZN N/A GO:0000122 ... Q4R941 41162378
    1055929 9s0u:a (6.72) BS01 dna N/A GO:0000786 ... Q71DI3 41162378
    1055930 9s0u:a (6.72) BS02 dna N/A GO:0000786 ... Q71DI3 41162378
    1055931 9s0u:b (6.72) BS01 dna N/A GO:0000781 ... P62805 41162378
    1055932 9s0u:b (6.72) BS02 dna N/A GO:0000781 ... P62805 41162378
    1055933 9s0u:c (6.72) BS01 dna N/A GO:0000786 ... P04908 41162378
    1055934 9s0u:c (6.72) BS02 dna N/A GO:0000786 ... P04908 41162378
    1055935 9s0u:d (6.72) BS01 dna N/A GO:0000786 ... O60814 41162378
    1055936 9s0u:d (6.72) BS02 dna N/A GO:0000786 ... O60814 41162378
    1055937 9s0u:e (6.72) BS01 dna N/A GO:0000786 ... Q71DI3 41162378
    1055938 9s0u:e (6.72) BS02 dna N/A GO:0000786 ... Q71DI3 41162378
    1055939 9s0u:f (6.72) BS01 dna N/A GO:0000781 ... P62805 41162378
    1055940 9s0u:g (6.72) BS01 peptide N/A GO:0000786 ... P04908 41162378
    1055941 9s0u:g (6.72) BS02 dna N/A GO:0000786 ... P04908 41162378
    1055942 9s0u:h (6.72) BS01 peptide N/A GO:0000786 ... O60814 41162378
    1055943 9s0v:A (3.35) BS01 ZN N/A GO:0001501 ... P05186 N/A
    1055944 9s0v:A (3.35) BS02 ZN N/A GO:0001501 ... P05186 N/A
    1055945 9s0v:A (3.35) BS03 MG N/A GO:0001501 ... P05186 N/A
    1055946 9s0v:A (3.35) BS04 CA N/A GO:0001501 ... P05186 N/A
    1055947 9s0v:B (3.35) BS01 ZN N/A GO:0001501 ... P05186 N/A
    1055948 9s0v:B (3.35) BS02 ZN N/A GO:0001501 ... P05186 N/A
    1055949 9s0v:B (3.35) BS03 MG N/A GO:0001501 ... P05186 N/A
    1055950 9s0v:B (3.35) BS04 CA N/A GO:0001501 ... P05186 N/A
    1055951 9s0v:C (3.35) BS01 ZN N/A GO:0001501 ... P05186 N/A
    1055952 9s0v:C (3.35) BS02 ZN N/A GO:0001501 ... P05186 N/A
    1055953 9s0v:C (3.35) BS03 MG N/A GO:0001501 ... P05186 N/A
    1055954 9s0v:C (3.35) BS04 CA N/A GO:0001501 ... P05186 N/A
    1055955 9s0v:D (3.35) BS01 ZN N/A GO:0001501 ... P05186 N/A
    1055956 9s0v:D (3.35) BS02 ZN N/A GO:0001501 ... P05186 N/A
    1055957 9s0v:D (3.35) BS03 MG N/A GO:0001501 ... P05186 N/A
    1055958 9s0v:D (3.35) BS04 CA N/A GO:0001501 ... P05186 N/A
    1055959 9s0v:E (3.35) BS01 ZN N/A GO:0001501 ... P05186 N/A
    1055960 9s0v:E (3.35) BS02 ZN N/A GO:0001501 ... P05186 N/A
    1055961 9s0v:E (3.35) BS03 MG N/A GO:0001501 ... P05186 N/A
    1055962 9s0v:E (3.35) BS04 CA N/A GO:0001501 ... P05186 N/A
    1055963 9s0z:B (3.0) BS01 rna N/A GO:0003727 ... Q9JMB7 41528842
    1055964 9s0z:B (3.0) BS02 MG N/A GO:0003727 ... Q9JMB7 41528842
    1055965 9s10:a (3.07) BS01 dna N/A GO:0000166 ... Q89269 41790558
    1055966 9s10:a (3.07) BS02 AGS N/A GO:0000166 ... Q89269 41790558
    1055967 9s10:b (3.07) BS01 dna N/A GO:0000166 ... Q89269 41790558
    1055968 9s10:b (3.07) BS02 AGS N/A GO:0000166 ... Q89269 41790558
    1055969 9s10:b (3.07) BS03 AGS N/A GO:0000166 ... Q89269 41790558
    1055970 9s10:c (3.07) BS01 dna N/A GO:0000166 ... Q89269 41790558
    1055971 9s10:c (3.07) BS02 AGS N/A GO:0000166 ... Q89269 41790558
    1055972 9s10:c (3.07) BS03 ADP N/A GO:0000166 ... Q89269 41790558
    1055973 9s10:e (3.07) BS01 dna N/A GO:0000166 ... Q89269 41790558
    1055974 9s1e:B (2.89) BS01 rna N/A GO:0003727 ... Q9JMB7 41528842
    1055975 9s1e:B (2.89) BS02 MG N/A GO:0003727 ... Q9JMB7 41528842
    1055976 9s1f:A (2.9) BS01 rna N/A GO:0003964 ... P21325 41709047
    1055977 9s1f:A (2.9) BS02 rna N/A GO:0003964 ... P21325 41709047
    1055978 9s1f:A (2.9) BS03 dna N/A GO:0003964 ... P21325 41709047
    1055979 9s1f:A (2.9) BS04 dna N/A GO:0003964 ... P21325 41709047
    1055980 9s1f:A (2.9) BS05 MG N/A GO:0003964 ... P21325 41709047
    1055981 9s1f:B (2.9) BS01 rna N/A GO:0003964 ... P21325 41709047
    1055982 9s1f:B (2.9) BS02 rna N/A GO:0003964 ... P21325 41709047
    1055983 9s1f:B (2.9) BS03 dna N/A GO:0003964 ... P21325 41709047
    1055984 9s1f:B (2.9) BS04 dna N/A GO:0003964 ... P21325 41709047
    1055985 9s1f:B (2.9) BS05 MG N/A GO:0003964 ... P21325 41709047
    1055986 9s1f:C (2.9) BS01 rna N/A GO:0003964 ... P21325 41709047
    1055987 9s1f:C (2.9) BS02 rna N/A GO:0003964 ... P21325 41709047
    1055988 9s1f:C (2.9) BS03 dna N/A GO:0003964 ... P21325 41709047
    1055989 9s1f:C (2.9) BS04 dna N/A GO:0003964 ... P21325 41709047
    1055990 9s1f:C (2.9) BS05 MG N/A GO:0003964 ... P21325 41709047
    1055991 9s1i:A (1.61) BS01 FMN N/A GO:0004152 ... Q02127 41143446
    1055992 9s1i:A (1.61) BS02 A1JKW N/A GO:0004152 ... Q02127 41143446
    1055993 9s1n:A (1.503) BS01 A1JKZ N/A N/A O43598 41531952
    1055994 9s1o:A (1.768) BS01 A1JK6 N/A N/A O43598 41531952
    1055995 9s1o:A (1.768) BS02 A1JK6 N/A N/A O43598 41531952
    1055996 9s1o:B (1.768) BS01 A1JK6 N/A N/A O43598 41531952
    1055997 9s1p:H (1.55) BS01 PLP N/A N/A N/A 41652856
    1055998 9s1q:A (2.0) BS01 PMP N/A N/A N/A 41652856
    1055999 9s1q:A (2.0) BS02 PMP N/A N/A N/A 41652856
    1056000 9s1q:B (2.0) BS01 PMP N/A N/A N/A 41652856

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).