SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1056401 9s3g:B (6.4) BS03 ZN N/A GO:0000781 ... I3LGP4 41162378
    1056402 9s3g:C (6.4) BS01 ZN N/A GO:0003677 ... I3LCH3 41162378
    1056403 9s3g:E (6.4) BS01 dna N/A GO:0003677 ... I3LSI7 41162378
    1056404 9s3g:I (6.4) BS01 ZN N/A GO:0001193 ... P60899 41162378
    1056405 9s3g:I (6.4) BS02 ZN N/A GO:0001193 ... P60899 41162378
    1056406 9s3g:J (6.4) BS01 ZN N/A GO:0003677 ... A0A4X1VYD0 41162378
    1056407 9s3g:L (6.4) BS01 ZN N/A GO:0001650 ... A0A8D0JYF1 41162378
    1056408 9s3g:M (6.4) BS01 rna N/A GO:0003676 ... Q7KZ85 41162378
    1056409 9s3g:Y (6.4) BS01 ZN N/A GO:0000122 ... Q4R941 41162378
    1056410 9s3g:Z (6.4) BS01 rna N/A GO:0000122 ... O00267 41162378
    1056411 9s3g:a (6.4) BS01 dna N/A GO:0000786 ... Q71DI3 41162378
    1056412 9s3g:a (6.4) BS02 dna N/A GO:0000786 ... Q71DI3 41162378
    1056413 9s3g:b (6.4) BS01 dna N/A GO:0000781 ... P62805 41162378
    1056414 9s3g:e (6.4) BS01 dna N/A GO:0000786 ... Q71DI3 41162378
    1056415 9s3g:f (6.4) BS01 dna N/A GO:0000781 ... P62805 41162378
    1056416 9s3g:j (6.4) BS01 dna N/A GO:0000511 ... Q9Y5B9 41162378
    1056417 9s3g:k (6.4) BS01 dna N/A GO:0003677 ... Q08945 41162378
    1056418 9s3g:k (6.4) BS02 dna N/A GO:0003677 ... Q08945 41162378
    1056419 9s3k:A (2.7) BS01 NDP N/A GO:0004459 ... Q60176 41274549
    1056420 9s3k:B (2.7) BS01 NDP N/A GO:0004459 ... Q60176 41274549
    1056421 9s3k:C (2.7) BS01 NDP N/A GO:0004459 ... Q60176 41274549
    1056422 9s3k:D (2.7) BS01 NDP N/A GO:0004459 ... Q60176 41274549
    1056423 9s3l:A (2.57) BS01 ZN N/A N/A A0A1M6IZB6 41098411
    1056424 9s3l:A (2.57) BS02 MG N/A N/A A0A1M6IZB6 41098411
    1056425 9s3l:B (2.57) BS01 ZN N/A N/A A0A1M6IZB6 41098411
    1056426 9s3l:B (2.57) BS02 MG N/A N/A A0A1M6IZB6 41098411
    1056427 9s3l:B (2.57) BS03 MG N/A N/A A0A1M6IZB6 41098411
    1056428 9s3l:C (2.57) BS01 ZN N/A N/A A0A1M6IZB6 41098411
    1056429 9s3l:C (2.57) BS02 MG N/A N/A A0A1M6IZB6 41098411
    1056430 9s3l:D (2.57) BS01 ZN N/A N/A A0A1M6IZB6 41098411
    1056431 9s3l:D (2.57) BS02 MG N/A N/A A0A1M6IZB6 41098411
    1056432 9s3n:B (1.93) BS01 peptide N/A N/A P0DTC9 41685809
    1056433 9s3p:A (3.1) BS01 HEM N/A GO:0004601 ... P69905 41321687
    1056434 9s3p:B (3.1) BS01 HEM N/A GO:0004601 ... P68871 41321687
    1056435 9s3p:C (3.1) BS01 HEM N/A GO:0004601 ... P69905 41321687
    1056436 9s3p:D (3.1) BS01 HEM N/A GO:0004601 ... P68871 41321687
    1056437 9s3x:A (2.423) BS01 A1JLU N/A N/A P00533 41432179
    1056438 9s3y:A (2.05) BS01 NDP N/A GO:0004459 ... Q6LZI3 41274549
    1056439 9s3y:B (2.05) BS01 NDP N/A GO:0004459 ... Q6LZI3 41274549
    1056440 9s3z:A (3.55) BS01 E2Q N/A GO:0004971 ... A0A286ZS63 41379938
    1056441 9s3z:B (3.55) BS01 E2Q N/A GO:0004971 ... I3L8N9 41379938
    1056442 9s3z:C (3.55) BS01 E2Q N/A GO:0004971 ... A0A286ZS63 41379938
    1056443 9s3z:D (3.55) BS01 E2Q N/A GO:0004971 ... I3L8N9 41379938
    1056444 9s42:A (2.32) BS01 ZZ7 N/A GO:0003677 ... P35747 41596427
    1056445 9s43:A (2.03) BS01 A1JLX N/A GO:0003677 ... P35747 41596427
    1056446 9s43:A (2.03) BS02 CA N/A GO:0003677 ... P35747 41596427
    1056447 9s44:A (2.15) BS01 ZN N/A GO:0017136 ... Q8IXJ6 40919320
    1056448 9s45:A (2.15) BS01 MG N/A N/A A0A1M6IZB6 41098411
    1056449 9s45:A (2.15) BS02 ZN N/A N/A A0A1M6IZB6 41098411
    1056450 9s45:A (2.15) BS03 AMP N/A N/A A0A1M6IZB6 41098411
    1056451 9s45:A (2.15) BS04 A1JLN N/A N/A A0A1M6IZB6 41098411
    1056452 9s45:A (2.15) BS05 MG N/A N/A A0A1M6IZB6 41098411
    1056453 9s45:B (2.15) BS01 MG N/A N/A A0A1M6IZB6 41098411
    1056454 9s45:B (2.15) BS02 MG N/A N/A A0A1M6IZB6 41098411
    1056455 9s45:B (2.15) BS03 ZN N/A N/A A0A1M6IZB6 41098411
    1056456 9s45:B (2.15) BS04 AMP N/A N/A A0A1M6IZB6 41098411
    1056457 9s45:B (2.15) BS05 A1JOG N/A N/A A0A1M6IZB6 41098411
    1056458 9s45:C (2.15) BS01 MG N/A N/A A0A1M6IZB6 41098411
    1056459 9s45:C (2.15) BS02 ZN N/A N/A A0A1M6IZB6 41098411
    1056460 9s45:C (2.15) BS03 AMP N/A N/A A0A1M6IZB6 41098411
    1056461 9s45:C (2.15) BS04 A1JOG N/A N/A A0A1M6IZB6 41098411
    1056462 9s45:C (2.15) BS05 MG N/A N/A A0A1M6IZB6 41098411
    1056463 9s45:D (2.15) BS01 MG N/A N/A A0A1M6IZB6 41098411
    1056464 9s45:D (2.15) BS02 MG N/A N/A A0A1M6IZB6 41098411
    1056465 9s45:D (2.15) BS03 ZN N/A N/A A0A1M6IZB6 41098411
    1056466 9s45:D (2.15) BS04 AMP N/A N/A A0A1M6IZB6 41098411
    1056467 9s45:D (2.15) BS05 A1JLN N/A N/A A0A1M6IZB6 41098411
    1056468 9s46:A (1.45) BS01 A1JLK N/A GO:0017136 ... Q8IXJ6 40919320
    1056469 9s46:A (1.45) BS02 ZN N/A GO:0017136 ... Q8IXJ6 40919320
    1056470 9s48:A (1.45) BS01 ZN N/A GO:0017136 ... Q8IXJ6 40919320
    1056471 9s48:A (1.45) BS02 A1JLL N/A GO:0017136 ... Q8IXJ6 40919320
    1056472 9s4f:A (4.2) BS01 HEM N/A GO:0004601 ... P69905 41321687
    1056473 9s4f:B (4.2) BS01 HEM N/A GO:0004601 ... P68871 41321687
    1056474 9s4g:A (2.701) BS01 ZN N/A N/A G8B6R8 41321686
    1056475 9s4g:A (2.701) BS02 AZM N/A N/A G8B6R8 41321686
    1056476 9s4g:A (2.701) BS03 AZM N/A N/A G8B6R8 41321686
    1056477 9s4g:B (2.701) BS01 ZN N/A N/A G8B6R8 41321686
    1056478 9s4g:B (2.701) BS02 AZM N/A N/A G8B6R8 41321686
    1056479 9s4g:C (2.701) BS01 ZN N/A N/A G8B6R8 41321686
    1056480 9s4g:C (2.701) BS02 AZM N/A N/A G8B6R8 41321686
    1056481 9s4g:C (2.701) BS03 AZM N/A N/A G8B6R8 41321686
    1056482 9s4g:D (2.701) BS01 ZN N/A N/A G8B6R8 41321686
    1056483 9s4g:D (2.701) BS02 AZM N/A N/A G8B6R8 41321686
    1056484 9s4h:A (2.24) BS01 A1JLP N/A GO:0006633 ... Q42561 40936424
    1056485 9s4i:A (4.0) BS01 HEM N/A GO:0004601 ... P69905 41321687
    1056486 9s4i:B (4.0) BS01 HEM N/A GO:0004601 ... P68871 41321687
    1056487 9s4i:C (4.0) BS01 HEM N/A N/A Q8NW39 41321687
    1056488 9s4j:A (4.1) BS01 HEM N/A GO:0004601 ... P69905 41321687
    1056489 9s4j:B (4.1) BS01 HEM N/A GO:0004601 ... P68871 41321687
    1056490 9s4k:A (4.0) BS01 HEM N/A GO:0004601 ... P69905 41321687
    1056491 9s4k:B (4.0) BS01 HEM N/A GO:0004601 ... P68871 41321687
    1056492 9s4v:A (2.64) BS01 ADP N/A N/A N/A N/A
    1056493 9s4v:A (2.64) BS02 AMP N/A N/A N/A N/A
    1056494 9s4v:B (2.64) BS01 ADP N/A N/A N/A N/A
    1056495 9s4v:B (2.64) BS02 AMP N/A N/A N/A N/A
    1056496 9s4v:C (2.64) BS01 ADP N/A N/A N/A N/A
    1056497 9s4v:C (2.64) BS02 AMP N/A N/A N/A N/A
    1056498 9s4x:A (2.76) BS01 ADP N/A N/A N/A N/A
    1056499 9s4x:A (2.76) BS02 ADP N/A N/A N/A N/A
    1056500 9s4x:B (2.76) BS01 ADP N/A N/A N/A N/A
    1056501 9s4x:B (2.76) BS02 ADP N/A N/A N/A N/A
    1056502 9s4y:A (3.35) BS01 B4P N/A N/A N/A N/A
    1056503 9s4y:A (3.35) BS02 B4P N/A N/A N/A N/A
    1056504 9s4y:B (3.35) BS01 B4P N/A N/A N/A N/A
    1056505 9s4y:B (3.35) BS02 B4P N/A N/A N/A N/A
    1056506 9s4z:A (2.62) BS01 ADP N/A N/A N/A N/A
    1056507 9s4z:A (2.62) BS02 ADP N/A N/A N/A N/A
    1056508 9s4z:B (2.62) BS01 ADP N/A N/A N/A N/A
    1056509 9s4z:B (2.62) BS02 AMP N/A N/A N/A N/A
    1056510 9s50:A (3.06) BS01 ADP N/A N/A N/A N/A
    1056511 9s50:A (3.06) BS02 ADP N/A N/A N/A N/A
    1056512 9s50:B (3.06) BS01 ADP N/A N/A N/A N/A
    1056513 9s50:B (3.06) BS02 ADP N/A N/A N/A N/A
    1056514 9s51:A (2.53) BS01 ADP N/A N/A N/A N/A
    1056515 9s51:A (2.53) BS02 ATP N/A N/A N/A N/A
    1056516 9s51:B (2.53) BS01 ADP N/A N/A N/A N/A
    1056517 9s51:B (2.53) BS02 ADP N/A N/A N/A N/A
    1056518 9s52:A (2.3) BS01 AMP N/A N/A N/A N/A
    1056519 9s52:A (2.3) BS02 AMP N/A N/A N/A N/A
    1056520 9s52:B (2.3) BS01 AMP N/A N/A N/A N/A
    1056521 9s52:B (2.3) BS02 AMP N/A N/A N/A N/A
    1056522 9s5b:A (1.5) BS01 MN N/A GO:0004364 ... A0A086IRG1 41083451
    1056523 9s5b:B (1.5) BS01 MN N/A GO:0004364 ... A0A086IRG1 41083451
    1056524 9s5k:A (1.38) BS01 A1JLW N/A GO:0008800 ... A7XM81 N/A
    1056525 9s5k:B (1.38) BS01 A1JLW N/A GO:0008800 ... A7XM81 N/A
    1056526 9s5l:A (1.6) BS01 XQN N/A GO:0008800 ... A7XM81 N/A
    1056527 9s5l:B (1.6) BS01 XQN N/A GO:0008800 ... A7XM81 N/A
    1056528 9s5m:A (1.59) BS01 KJK N/A GO:0008800 ... A7XM81 N/A
    1056529 9s5m:B (1.59) BS01 KJK N/A GO:0008800 ... A7XM81 N/A
    1056530 9s5x:A (1.34) BS01 A1H1H N/A GO:0004318 ... Q5F696 40968127
    1056531 9s5x:A (1.34) BS02 NAD N/A GO:0004318 ... Q5F696 40968127
    1056532 9s5x:B (1.34) BS01 A1H1H N/A GO:0004318 ... Q5F696 40968127
    1056533 9s5x:B (1.34) BS02 NAD N/A GO:0004318 ... Q5F696 40968127
    1056534 9s62:A (1.059) BS01 ASO N/A N/A P17931 41217252
    1056535 9s62:A (1.059) BS02 GAL N/A N/A P17931 41217252
    1056536 9s62:A (1.059) BS03 A1JL1 N/A N/A P17931 41217252
    1056537 9s64:C (1.85) BS01 A1JLZ N/A N/A P28347 41212049
    1056538 9s64:D (1.85) BS01 A1JLZ N/A N/A P28347 41212049
    1056539 9s6a:A (1.41) BS01 MAN N/A N/A Q9LJK1 41577690
    1056540 9s6a:A (1.41) BS02 GDP N/A N/A Q9LJK1 41577690
    1056541 9s6c:A (1.817) BS01 CNC N/A N/A Q8A7N8 N/A
    1056542 9s6c:B (1.817) BS01 CNC N/A N/A Q8A7N8 N/A
    1056543 9s6c:C (1.817) BS01 CNC N/A N/A Q8A7N8 N/A
    1056544 9s6m:A (1.427) BS01 A1JL2 N/A N/A Q16548 41432228
    1056545 9s6m:B (1.427) BS01 A1JL2 N/A N/A Q16548 41432228
    1056546 9s6r:A (3.08) BS01 A1JMA N/A N/A N/A 41807832
    1056547 9s6r:A (3.08) BS02 Y01 N/A N/A N/A 41807832
    1056548 9s6r:A (3.08) BS03 IZY N/A N/A N/A 41807832
    1056549 9s6s:A (2.89) BS01 A1JL9 N/A N/A N/A 41807832
    1056550 9s6s:A (2.89) BS02 A1JMT N/A N/A N/A 41807832
    1056551 9s6s:A (2.89) BS03 Y01 N/A N/A N/A 41807832
    1056552 9s6t:A (2.42) BS01 A1JMT N/A N/A N/A 41807832
    1056553 9s6t:A (2.42) BS02 A1JMC N/A N/A N/A 41807832
    1056554 9s6t:A (2.42) BS03 Y01 N/A N/A N/A 41807832
    1056555 9s6t:A (2.42) BS04 AV0 N/A N/A N/A 41807832
    1056556 9s6t:H (2.42) BS01 Y01 N/A N/A N/A 41807832
    1056557 9s6t:H (2.42) BS02 AV0 N/A N/A N/A 41807832
    1056558 9s6u:A (2.95) BS01 A1JMT N/A N/A N/A 41807832
    1056559 9s6u:A (2.95) BS02 A1JMB N/A N/A N/A 41807832
    1056560 9s6u:A (2.95) BS03 Y01 N/A N/A N/A 41807832
    1056561 9s6u:A (2.95) BS04 Y01 N/A N/A N/A 41807832
    1056562 9s6u:A (2.95) BS05 Y01 N/A N/A N/A 41807832
    1056563 9s6w:A (2.074) BS01 A1JL5 N/A GO:0016032 ... B6DRA0 N/A
    1056564 9s70:A (1.95) BS01 peptide N/A GO:0003677 ... P19793 41276988
    1056565 9s70:A (1.95) BS02 A1JL7 N/A GO:0003677 ... P19793 41276988
    1056566 9s71:A (2.0) BS01 peptide N/A GO:0003677 ... P19793 41276988
    1056567 9s71:A (2.0) BS02 A1JL8 N/A GO:0003677 ... P19793 41276988
    1056568 9s73:A (2.5) BS01 AIC N/A GO:0003677 ... P35747 41596427
    1056569 9s78:G (3.15) BS01 MG N/A GO:0003674 ... P21243 41252648
    1056570 9s78:H (3.15) BS01 peptide N/A N/A P25043 41252648
    1056571 9s78:I (3.15) BS01 peptide N/A GO:0005515 ... P25451 41252648
    1056572 9s78:K (3.15) BS01 peptide N/A N/A P30656 41252648
    1056573 9s78:K (3.15) BS02 MG N/A N/A P30656 41252648
    1056574 9s78:L (3.15) BS01 peptide N/A GO:0003674 ... P23724 41252648
    1056575 9s78:N (3.15) BS01 MG N/A GO:0004175 ... P38624 41252648
    1056576 9s78:V (3.15) BS01 peptide N/A N/A P25043 41252648
    1056577 9s78:V (3.15) BS02 MG N/A N/A P25043 41252648
    1056578 9s78:W (3.15) BS01 peptide N/A GO:0005515 ... P25451 41252648
    1056579 9s78:Y (3.15) BS01 peptide N/A N/A P30656 41252648
    1056580 9s78:Y (3.15) BS02 MG N/A N/A P30656 41252648
    1056581 9s78:Z (3.15) BS01 peptide N/A GO:0003674 ... P23724 41252648
    1056582 9s78:Z (3.15) BS02 MG N/A GO:0003674 ... P23724 41252648
    1056583 9s7f:A (1.767) BS01 HEM N/A GO:0005737 ... Q9ZAU3 41639599
    1056584 9s7f:A (1.767) BS02 A1L3V N/A GO:0005737 ... Q9ZAU3 41639599
    1056585 9s7f:D (1.767) BS01 HEM N/A GO:0005737 ... Q9ZAU3 41639599
    1056586 9s7f:D (1.767) BS02 A1L3V N/A GO:0005737 ... Q9ZAU3 41639599
    1056587 9s80:A (2.45) BS01 MAN N/A N/A Q9LJF3 N/A
    1056588 9s80:A (2.45) BS02 BLD N/A N/A Q9LJF3 N/A
    1056589 9s80:B (2.45) BS01 MAN N/A N/A Q9LJF3 N/A
    1056590 9s80:B (2.45) BS02 MAN N/A N/A Q9LJF3 N/A
    1056591 9s80:B (2.45) BS03 MAN N/A N/A Q9LJF3 N/A
    1056592 9s80:B (2.45) BS04 GLY N/A N/A Q9LJF3 N/A
    1056593 9s80:B (2.45) BS05 BLD N/A N/A Q9LJF3 N/A
    1056594 9s87:A (2.14) BS01 A1JME N/A N/A O22476 N/A
    1056595 9s8i:A (2.3) BS01 WIR N/A GO:0005524 ... Q9HW02 N/A
    1056596 9s8i:B (2.3) BS01 WIR N/A GO:0005524 ... Q9HW02 N/A
    1056597 9s8s:A (2.65) BS01 A1JMF N/A N/A O22476 N/A
    1056598 9s8v:A (2.4) BS01 A1JMG N/A N/A O22476 N/A
    1056599 9s8w:A (3.49) BS01 FUC N/A GO:0016020 ... Q9Y251 40940793
    1056600 9s8z:A (2.35) BS01 A1JMH N/A N/A O22476 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).