SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1057401 9slj:D (3.8) BS01 dna N/A GO:0000786 ... P06899 41145915
    1057402 9slj:D (3.8) BS02 dna N/A GO:0000786 ... P06899 41145915
    1057403 9slj:E (3.8) BS01 dna N/A GO:0000786 ... P84233 41145915
    1057404 9slj:E (3.8) BS02 dna N/A GO:0000786 ... P84233 41145915
    1057405 9slj:F (3.8) BS01 dna N/A GO:0000786 ... P62799 41145915
    1057406 9slj:F (3.8) BS02 dna N/A GO:0000786 ... P62799 41145915
    1057407 9slj:G (3.8) BS01 dna N/A GO:0000786 ... P0C0S8 41145915
    1057408 9slj:G (3.8) BS02 dna N/A GO:0000786 ... P0C0S8 41145915
    1057409 9slj:H (3.8) BS01 dna N/A GO:0000786 ... P06899 41145915
    1057410 9slj:H (3.8) BS02 dna N/A GO:0000786 ... P06899 41145915
    1057411 9sls:A (1.8) BS01 SAH N/A N/A N/A N/A
    1057412 9sls:B (1.8) BS01 SAH N/A N/A N/A N/A
    1057413 9slz:A (3.8) BS01 rna N/A GO:0000049 ... Q5SJG7 8947055
    1057414 9slz:A (3.8) BS02 KAA N/A GO:0000049 ... Q5SJG7 8947055
    1057415 9sm0:A (1.4) BS01 SAH N/A N/A A0A6L3NMB0 N/A
    1057416 9sm0:A (1.4) BS02 CO3 N/A N/A A0A6L3NMB0 N/A
    1057417 9sm0:A (1.4) BS03 CO3 N/A N/A A0A6L3NMB0 N/A
    1057418 9sm1:A (2.2) BS01 SAH N/A N/A A0AB33WVX4 N/A
    1057419 9sm1:A (2.2) BS02 FPP N/A N/A A0AB33WVX4 N/A
    1057420 9sm1:B (2.2) BS01 SAH N/A N/A A0AB33WVX4 N/A
    1057421 9sm1:B (2.2) BS02 FPP N/A N/A A0AB33WVX4 N/A
    1057422 9sm1:C (2.2) BS01 SAH N/A N/A A0AB33WVX4 N/A
    1057423 9sm1:C (2.2) BS02 FPP N/A N/A A0AB33WVX4 N/A
    1057424 9sm1:D (2.2) BS01 SAH N/A N/A A0AB33WVX4 N/A
    1057425 9sm1:D (2.2) BS02 FPP N/A N/A A0AB33WVX4 N/A
    1057426 9sm1:E (2.2) BS01 SAH N/A N/A A0AB33WVX4 N/A
    1057427 9sm1:F (2.2) BS01 SAH N/A N/A A0AB33WVX4 N/A
    1057428 9sm3:A (2.05) BS01 SAH N/A N/A A0AB33WUZ9 N/A
    1057429 9sm3:B (2.05) BS01 SAH N/A N/A A0AB33WUZ9 N/A
    1057430 9sm3:C (2.05) BS01 SAH N/A N/A A0AB33WUZ9 N/A
    1057431 9sm3:D (2.05) BS01 SAH N/A N/A A0AB33WUZ9 N/A
    1057432 9sm3:E (2.05) BS01 SAH N/A N/A A0AB33WUZ9 N/A
    1057433 9sm3:F (2.05) BS01 SAH N/A N/A A0AB33WUZ9 N/A
    1057434 9sm5:A (2.6) BS01 SAH N/A N/A A0AB33WUZ9 N/A
    1057435 9sm5:A (2.6) BS02 A1JOQ N/A N/A A0AB33WUZ9 N/A
    1057436 9sm5:B (2.6) BS01 SAH N/A N/A A0AB33WUZ9 N/A
    1057437 9sm5:C (2.6) BS01 SAH N/A N/A A0AB33WUZ9 N/A
    1057438 9smf:B (2.51) BS01 SF4 N/A N/A N/A 41786699
    1057439 9smf:B (2.51) BS02 U10 N/A N/A N/A 41786699
    1057440 9smf:D (2.51) BS01 SF4 N/A N/A N/A 41786699
    1057441 9smf:D (2.51) BS02 U10 N/A N/A N/A 41786699
    1057442 9smf:E (2.51) BS01 FES N/A N/A N/A 41786699
    1057443 9smf:F (2.51) BS01 FMN N/A N/A N/A 41786699
    1057444 9smf:F (2.51) BS02 SF4 N/A N/A N/A 41786699
    1057445 9smf:F (2.51) BS03 NAI N/A N/A N/A 41786699
    1057446 9smf:G (2.51) BS01 SF4 N/A N/A N/A 41786699
    1057447 9smf:G (2.51) BS02 SF4 N/A N/A N/A 41786699
    1057448 9smf:G (2.51) BS03 FES N/A N/A N/A 41786699
    1057449 9smf:H (2.51) BS01 U10 N/A N/A N/A 41786699
    1057450 9smf:I (2.51) BS01 SF4 N/A N/A N/A 41786699
    1057451 9smf:I (2.51) BS02 SF4 N/A N/A N/A 41786699
    1057452 9smf:O (2.51) BS01 DGT N/A N/A N/A 41786699
    1057453 9smf:P (2.51) BS01 NDP N/A N/A N/A 41786699
    1057454 9smf:R (2.51) BS01 ZN N/A N/A N/A 41786699
    1057455 9smf:U (2.51) BS01 EHZ N/A N/A N/A 41786699
    1057456 9smf:W (2.51) BS01 EHZ N/A N/A N/A 41786699
    1057457 9smf:n (2.51) BS01 EHZ N/A N/A N/A 41786699
    1057458 9smg:B (2.42) BS01 SF4 N/A N/A N/A 41786699
    1057459 9smg:B (2.42) BS02 U10 N/A N/A N/A 41786699
    1057460 9smg:D (2.42) BS01 SF4 N/A N/A N/A 41786699
    1057461 9smg:D (2.42) BS02 U10 N/A N/A N/A 41786699
    1057462 9smg:E (2.42) BS01 FES N/A N/A N/A 41786699
    1057463 9smg:F (2.42) BS01 FMN N/A N/A N/A 41786699
    1057464 9smg:F (2.42) BS02 SF4 N/A N/A N/A 41786699
    1057465 9smg:F (2.42) BS03 NAI N/A N/A N/A 41786699
    1057466 9smg:G (2.42) BS01 SF4 N/A N/A N/A 41786699
    1057467 9smg:G (2.42) BS02 SF4 N/A N/A N/A 41786699
    1057468 9smg:G (2.42) BS03 FES N/A N/A N/A 41786699
    1057469 9smg:H (2.42) BS01 U10 N/A N/A N/A 41786699
    1057470 9smg:I (2.42) BS01 SF4 N/A N/A N/A 41786699
    1057471 9smg:I (2.42) BS02 SF4 N/A N/A N/A 41786699
    1057472 9smg:O (2.42) BS01 DGT N/A N/A N/A 41786699
    1057473 9smg:P (2.42) BS01 NDP N/A N/A N/A 41786699
    1057474 9smg:R (2.42) BS01 ZN N/A N/A N/A 41786699
    1057475 9smg:U (2.42) BS01 EHZ N/A N/A N/A 41786699
    1057476 9smg:W (2.42) BS01 EHZ N/A N/A N/A 41786699
    1057477 9smg:n (2.42) BS01 EHZ N/A N/A N/A 41786699
    1057478 9smh:B (2.61) BS01 SF4 N/A N/A N/A 41786699
    1057479 9smh:D (2.61) BS01 SF4 N/A N/A N/A 41786699
    1057480 9smh:E (2.61) BS01 FES N/A N/A N/A 41786699
    1057481 9smh:F (2.61) BS01 NAI N/A N/A N/A 41786699
    1057482 9smh:F (2.61) BS02 SF4 N/A N/A N/A 41786699
    1057483 9smh:F (2.61) BS03 FMN N/A N/A N/A 41786699
    1057484 9smh:G (2.61) BS01 SF4 N/A N/A N/A 41786699
    1057485 9smh:G (2.61) BS02 SF4 N/A N/A N/A 41786699
    1057486 9smh:G (2.61) BS03 FES N/A N/A N/A 41786699
    1057487 9smh:I (2.61) BS01 SF4 N/A N/A N/A 41786699
    1057488 9smh:I (2.61) BS02 SF4 N/A N/A N/A 41786699
    1057489 9smh:O (2.61) BS01 DGT N/A N/A N/A 41786699
    1057490 9smh:P (2.61) BS01 NDP N/A N/A N/A 41786699
    1057491 9smh:R (2.61) BS01 ZN N/A N/A N/A 41786699
    1057492 9smh:W (2.61) BS01 EHZ N/A N/A N/A 41786699
    1057493 9smh:n (2.61) BS01 EHZ N/A N/A N/A 41786699
    1057494 9smi:B (2.01) BS01 SF4 N/A N/A N/A 41786699
    1057495 9smi:D (2.01) BS01 SF4 N/A N/A N/A 41786699
    1057496 9smi:E (2.01) BS01 FES N/A N/A N/A 41786699
    1057497 9smi:F (2.01) BS01 FMN N/A N/A N/A 41786699
    1057498 9smi:F (2.01) BS02 SF4 N/A N/A N/A 41786699
    1057499 9smi:F (2.01) BS03 NAI N/A N/A N/A 41786699
    1057500 9smi:G (2.01) BS01 SF4 N/A N/A N/A 41786699
    1057501 9smi:G (2.01) BS02 SF4 N/A N/A N/A 41786699
    1057502 9smi:G (2.01) BS03 FES N/A N/A N/A 41786699
    1057503 9smi:I (2.01) BS01 SF4 N/A N/A N/A 41786699
    1057504 9smi:I (2.01) BS02 SF4 N/A N/A N/A 41786699
    1057505 9smi:O (2.01) BS01 DGT N/A N/A N/A 41786699
    1057506 9smi:P (2.01) BS01 NDP N/A N/A N/A 41786699
    1057507 9smi:R (2.01) BS01 ZN N/A N/A N/A 41786699
    1057508 9smi:T (2.01) BS01 EHZ N/A N/A N/A 41786699
    1057509 9smi:W (2.01) BS01 EHZ N/A N/A N/A 41786699
    1057510 9smi:n (2.01) BS01 EHZ N/A N/A N/A 41786699
    1057511 9smk:A (3.8) BS01 CA N/A GO:0002407 ... Q8TD43 41372170
    1057512 9smk:A (3.8) BS02 Y01 N/A GO:0002407 ... Q8TD43 41372170
    1057513 9smk:A (3.8) BS03 Y01 N/A GO:0002407 ... Q8TD43 41372170
    1057514 9smk:A (3.8) BS04 Y01 N/A GO:0002407 ... Q8TD43 41372170
    1057515 9smk:A (3.8) BS05 Y01 N/A GO:0002407 ... Q8TD43 41372170
    1057516 9smk:B (3.8) BS01 Y01 N/A GO:0002407 ... Q8TD43 41372170
    1057517 9smk:B (3.8) BS02 CA N/A GO:0002407 ... Q8TD43 41372170
    1057518 9smk:B (3.8) BS03 Y01 N/A GO:0002407 ... Q8TD43 41372170
    1057519 9smk:B (3.8) BS04 Y01 N/A GO:0002407 ... Q8TD43 41372170
    1057520 9smk:B (3.8) BS05 Y01 N/A GO:0002407 ... Q8TD43 41372170
    1057521 9smk:C (3.8) BS01 Y01 N/A GO:0002407 ... Q8TD43 41372170
    1057522 9smk:C (3.8) BS02 CA N/A GO:0002407 ... Q8TD43 41372170
    1057523 9smk:C (3.8) BS03 Y01 N/A GO:0002407 ... Q8TD43 41372170
    1057524 9smk:C (3.8) BS04 Y01 N/A GO:0002407 ... Q8TD43 41372170
    1057525 9smk:C (3.8) BS05 Y01 N/A GO:0002407 ... Q8TD43 41372170
    1057526 9smk:D (3.8) BS01 Y01 N/A GO:0002407 ... Q8TD43 41372170
    1057527 9smk:D (3.8) BS02 Y01 N/A GO:0002407 ... Q8TD43 41372170
    1057528 9smk:D (3.8) BS03 CA N/A GO:0002407 ... Q8TD43 41372170
    1057529 9smk:D (3.8) BS04 Y01 N/A GO:0002407 ... Q8TD43 41372170
    1057530 9smk:D (3.8) BS05 Y01 N/A GO:0002407 ... Q8TD43 41372170
    1057531 9smo:A (2.199) BS01 dna N/A N/A Q9UQ84 41359073
    1057532 9smo:A (2.199) BS02 dna N/A N/A Q9UQ84 41359073
    1057533 9smo:A (2.199) BS03 MG N/A N/A Q9UQ84 41359073
    1057534 9smo:A (2.199) BS04 A1JO0 N/A N/A Q9UQ84 41359073
    1057535 9smq:A (2.2) BS01 peptide N/A GO:0003677 ... O00482 N/A
    1057536 9smq:A (2.2) BS02 A1JOT N/A GO:0003677 ... O00482 N/A
    1057537 9smz:A (2.28) BS01 YMR N/A GO:0006355 ... W8U802 41474324
    1057538 9smz:A (2.28) BS02 YMR N/A GO:0006355 ... W8U802 41474324
    1057539 9smz:B (2.28) BS01 YMR N/A GO:0006355 ... W8U802 41474324
    1057540 9snd:A (2.4) BS01 A1JOW N/A GO:0001919 ... P21836 41551022
    1057541 9snd:A (2.4) BS02 9YU N/A GO:0001919 ... P21836 41551022
    1057542 9snd:A (2.4) BS03 A1JOW N/A GO:0001919 ... P21836 41551022
    1057543 9snd:B (2.4) BS01 9YU N/A GO:0001919 ... P21836 41551022
    1057544 9snd:B (2.4) BS02 A1JOW N/A GO:0001919 ... P21836 41551022
    1057545 9snd:B (2.4) BS03 A1JOW N/A GO:0001919 ... P21836 41551022
    1057546 9snd:B (2.4) BS04 A1JOW N/A GO:0001919 ... P21836 41551022
    1057547 9snj:A (2.3) BS01 A1JO2 N/A GO:0001919 ... P21836 41551022
    1057548 9snj:A (2.3) BS02 A1JO2 N/A GO:0001919 ... P21836 41551022
    1057549 9snj:A (2.3) BS03 A1JO2 N/A GO:0001919 ... P21836 41551022
    1057550 9snj:A (2.3) BS04 A1JO2 N/A GO:0001919 ... P21836 41551022
    1057551 9snj:B (2.3) BS01 A1JO2 N/A GO:0001919 ... P21836 41551022
    1057552 9snj:B (2.3) BS02 A1JO2 N/A GO:0001919 ... P21836 41551022
    1057553 9snj:B (2.3) BS03 A1JO2 N/A GO:0001919 ... P21836 41551022
    1057554 9sob:A16 (35.0) BS01 peptide N/A GO:0005515 ... O22224 41174229
    1057555 9sob:A24 (35.0) BS01 peptide N/A GO:0005515 ... O22224 41174229
    1057556 9sob:A32 (35.0) BS01 peptide N/A GO:0005515 ... O22224 41174229
    1057557 9sob:A40 (35.0) BS01 peptide N/A GO:0005515 ... O22224 41174229
    1057558 9sp7:A (1.2) BS01 MN N/A N/A Q96L58 41316887
    1057559 9spc:A (2.66) BS01 FUC N/A GO:0001540 ... P06276 N/A
    1057560 9spc:A (2.66) BS02 FUC N/A GO:0001540 ... P06276 N/A
    1057561 9spc:A (2.66) BS03 A1JPK N/A GO:0001540 ... P06276 N/A
    1057562 9spc:A (2.66) BS04 SIA N/A GO:0001540 ... P06276 N/A
    1057563 9spf:LA (2.4) BS01 rna N/A GO:0002181 ... P62917 41535458
    1057564 9spf:LA (2.4) BS02 rna N/A GO:0002181 ... P62917 41535458
    1057565 9spf:LB (2.4) BS01 rna N/A GO:0002181 ... P39023 41535458
    1057566 9spf:LC (2.4) BS01 rna N/A GO:0002181 ... P36578 41535458
    1057567 9spf:LC (2.4) BS02 rna N/A GO:0002181 ... P36578 41535458
    1057568 9spf:LD (2.4) BS01 rna N/A GO:0000027 ... P46777 41535458
    1057569 9spf:LD (2.4) BS02 rna N/A GO:0000027 ... P46777 41535458
    1057570 9spf:LE (2.4) BS01 rna N/A GO:0002181 ... Q02878 41535458
    1057571 9spf:LF (2.4) BS01 rna N/A GO:0000463 ... P18124 41535458
    1057572 9spf:LF (2.4) BS02 rna N/A GO:0000463 ... P18124 41535458
    1057573 9spf:LG (2.4) BS01 rna N/A GO:0000470 ... P62424 41535458
    1057574 9spf:LG (2.4) BS02 rna N/A GO:0000470 ... P62424 41535458
    1057575 9spf:LH (2.4) BS01 rna N/A GO:0002181 ... P32969 41535458
    1057576 9spf:LI (2.4) BS01 rna N/A GO:0000122 ... P27635 41535458
    1057577 9spf:LI (2.4) BS02 rna N/A GO:0000122 ... P27635 41535458
    1057578 9spf:LI (2.4) BS03 rna N/A GO:0000122 ... P27635 41535458
    1057579 9spf:LJ (2.4) BS01 rna N/A GO:0000027 ... P62913 41535458
    1057580 9spf:LJ (2.4) BS02 rna N/A GO:0000027 ... P62913 41535458
    1057581 9spf:LJ (2.4) BS03 rna N/A GO:0000027 ... P62913 41535458
    1057582 9spf:LL (2.4) BS01 rna N/A GO:0002181 ... P26373 41535458
    1057583 9spf:LL (2.4) BS02 rna N/A GO:0002181 ... P26373 41535458
    1057584 9spf:LM (2.4) BS01 rna N/A GO:0002181 ... P50914 41535458
    1057585 9spf:LN (2.4) BS01 rna N/A GO:0002181 ... P61313 41535458
    1057586 9spf:LN (2.4) BS02 rna N/A GO:0002181 ... P61313 41535458
    1057587 9spf:LO (2.4) BS01 rna N/A GO:0002181 ... P40429 41535458
    1057588 9spf:LP (2.4) BS01 rna N/A GO:0002181 ... P18621 41535458
    1057589 9spf:LP (2.4) BS02 rna N/A GO:0002181 ... P18621 41535458
    1057590 9spf:LQ (2.4) BS01 rna N/A GO:0002181 ... Q07020 41535458
    1057591 9spf:LR (2.4) BS01 rna N/A GO:0002181 ... P84098 41535458
    1057592 9spf:LR (2.4) BS02 rna N/A GO:0002181 ... P84098 41535458
    1057593 9spf:LS (2.4) BS01 rna N/A GO:0002181 ... Q02543 41535458
    1057594 9spf:LS (2.4) BS02 rna N/A GO:0002181 ... Q02543 41535458
    1057595 9spf:LT (2.4) BS01 rna N/A GO:0001650 ... P46778 41535458
    1057596 9spf:LT (2.4) BS02 rna N/A GO:0001650 ... P46778 41535458
    1057597 9spf:LU (2.4) BS01 rna N/A GO:0002181 ... P35268 41535458
    1057598 9spf:LV (2.4) BS01 rna N/A GO:0000122 ... P62829 41535458
    1057599 9spf:LV (2.4) BS02 rna N/A GO:0000122 ... P62829 41535458
    1057600 9spf:LW (2.4) BS01 rna N/A GO:0002181 ... P83731 41535458

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).