SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1058001 9ss5:BD (2.7) BS01 rna N/A GO:0001070 ... P60723 41542601
    1058002 9ss5:BE (2.7) BS01 rna N/A GO:0000027 ... P62399 41542601
    1058003 9ss5:BE (2.7) BS02 rna N/A GO:0000027 ... P62399 41542601
    1058004 9ss5:BF (2.7) BS01 rna N/A GO:0000027 ... P0AG55 41542601
    1058005 9ss5:BG (2.7) BS01 rna N/A GO:0000028 ... P0A7U7 41542601
    1058006 9ss5:BI (2.7) BS01 rna N/A GO:0002181 ... P0A7R1 41542601
    1058007 9ss5:BK (2.7) BS01 rna N/A GO:0000027 ... P0A7J7 41542601
    1058008 9ss5:BM (2.7) BS01 rna N/A GO:0002181 ... P0AA10 41542601
    1058009 9ss5:BN (2.7) BS01 rna N/A GO:0002181 ... P0ADY3 41542601
    1058010 9ss5:BO (2.7) BS01 rna N/A GO:0002181 ... P02413 41542601
    1058011 9ss5:BP (2.7) BS01 rna N/A GO:0000027 ... P0ADY7 41542601
    1058012 9ss5:BP (2.7) BS02 rna N/A GO:0000027 ... P0ADY7 41542601
    1058013 9ss5:BQ (2.7) BS01 rna N/A GO:0000027 ... P0AG44 41542601
    1058014 9ss5:BR (2.7) BS01 rna N/A GO:0002181 ... P0C018 41542601
    1058015 9ss5:BR (2.7) BS02 rna N/A GO:0002181 ... P0C018 41542601
    1058016 9ss5:BS (2.7) BS01 rna N/A GO:0000027 ... P0A7K6 41542601
    1058017 9ss5:BT (2.7) BS01 rna N/A GO:0000027 ... P0A7L3 41542601
    1058018 9ss5:BU (2.7) BS01 rna N/A GO:0002181 ... P0AG48 41542601
    1058019 9ss5:BV (2.7) BS01 rna N/A GO:0002181 ... P61175 41542601
    1058020 9ss5:BW (2.7) BS01 rna N/A GO:0000027 ... P0ADZ0 41542601
    1058021 9ss5:BX (2.7) BS01 rna N/A GO:0000027 ... P60624 41542601
    1058022 9ss5:BY (2.7) BS01 rna N/A GO:0000027 ... P68919 41542601
    1058023 9ss6:AA (2.6) BS01 rna N/A GO:0000028 ... P0A7V0 41542601
    1058024 9ss6:AB (2.6) BS01 rna N/A GO:0000028 ... P0A7V3 41542601
    1058025 9ss6:AC (2.6) BS01 rna N/A GO:0000028 ... P0A7V8 41542601
    1058026 9ss6:AD (2.6) BS01 rna N/A GO:0000028 ... P0A7W1 41542601
    1058027 9ss6:AE (2.6) BS01 rna N/A GO:0002181 ... P02358 41542601
    1058028 9ss6:AF (2.6) BS01 rna N/A GO:0000028 ... P02359 41542601
    1058029 9ss6:AG (2.6) BS01 rna N/A GO:0000028 ... P0A7W7 41542601
    1058030 9ss6:AH (2.6) BS01 rna N/A GO:0002181 ... P0A7X3 41542601
    1058031 9ss6:AI (2.6) BS01 rna N/A GO:0000049 ... P0A7R5 41542601
    1058032 9ss6:AJ (2.6) BS01 rna N/A GO:0002181 ... P0A7R9 41542601
    1058033 9ss6:AK (2.6) BS01 rna N/A GO:0000049 ... P0A7S3 41542601
    1058034 9ss6:AL (2.6) BS01 rna N/A GO:0000049 ... P0A7S9 41542601
    1058035 9ss6:AL (2.6) BS02 rna N/A GO:0000049 ... P0A7S9 41542601
    1058036 9ss6:AM (2.6) BS01 rna N/A GO:0000028 ... P0AG59 41542601
    1058037 9ss6:AN (2.6) BS01 rna N/A GO:0000028 ... P0ADZ4 41542601
    1058038 9ss6:AO (2.6) BS01 rna N/A GO:0000028 ... P0A7T3 41542601
    1058039 9ss6:AP (2.6) BS01 rna N/A GO:0000028 ... P0AG63 41542601
    1058040 9ss6:AQ (2.6) BS01 rna N/A GO:0002181 ... P0A7T7 41542601
    1058041 9ss6:AR (2.6) BS01 rna N/A GO:0002181 ... P0A7U3 41542601
    1058042 9ss6:AS (2.6) BS01 rna N/A GO:0000028 ... P0A7U7 41542601
    1058043 9ss6:AT (2.6) BS01 rna N/A GO:0000028 ... P68679 41542601
    1058044 9ss6:B0 (2.6) BS01 rna N/A GO:0000027 ... P0A7L8 41542601
    1058045 9ss6:B1 (2.6) BS01 rna N/A GO:0000027 ... P0A7M2 41542601
    1058046 9ss6:B2 (2.6) BS01 rna N/A GO:0000027 ... P0A7M6 41542601
    1058047 9ss6:B3 (2.6) BS01 rna N/A GO:0000027 ... P0AG51 41542601
    1058048 9ss6:B4 (2.6) BS01 rna N/A GO:0002181 ... P0A7M9 41542601
    1058049 9ss6:B5 (2.6) BS01 rna N/A GO:0000027 ... P0A7N4 41542601
    1058050 9ss6:B6 (2.6) BS01 rna N/A GO:0000027 ... P0A7N9 41542601
    1058051 9ss6:B7 (2.6) BS01 rna N/A GO:0002181 ... P0A7P5 41542601
    1058052 9ss6:B8 (2.6) BS01 rna N/A GO:0002181 ... P0A7Q1 41542601
    1058053 9ss6:B9 (2.6) BS01 rna N/A GO:0002181 ... P0A7Q6 41542601
    1058054 9ss6:BA (2.6) BS01 rna N/A GO:0000027 ... P0A7L0 41542601
    1058055 9ss6:BB (2.6) BS01 rna N/A GO:0000027 ... P60422 41542601
    1058056 9ss6:BC (2.6) BS01 rna N/A GO:0000027 ... P60438 41542601
    1058057 9ss6:BD (2.6) BS01 rna N/A GO:0001070 ... P60723 41542601
    1058058 9ss6:BE (2.6) BS01 rna N/A GO:0000027 ... P62399 41542601
    1058059 9ss6:BE (2.6) BS02 rna N/A GO:0000027 ... P62399 41542601
    1058060 9ss6:BF (2.6) BS01 rna N/A GO:0000027 ... P0AG55 41542601
    1058061 9ss6:BG (2.6) BS01 rna N/A GO:0000028 ... P0A7U7 41542601
    1058062 9ss6:BI (2.6) BS01 rna N/A GO:0002181 ... P0A7R1 41542601
    1058063 9ss6:BK (2.6) BS01 rna N/A GO:0000027 ... P0A7J7 41542601
    1058064 9ss6:BM (2.6) BS01 rna N/A GO:0002181 ... P0AA10 41542601
    1058065 9ss6:BN (2.6) BS01 rna N/A GO:0002181 ... P0ADY3 41542601
    1058066 9ss6:BN (2.6) BS02 rna N/A GO:0002181 ... P0ADY3 41542601
    1058067 9ss6:BO (2.6) BS01 rna N/A GO:0002181 ... P02413 41542601
    1058068 9ss6:BP (2.6) BS01 rna N/A GO:0000027 ... P0ADY7 41542601
    1058069 9ss6:BP (2.6) BS02 rna N/A GO:0000027 ... P0ADY7 41542601
    1058070 9ss6:BQ (2.6) BS01 rna N/A GO:0000027 ... P0AG44 41542601
    1058071 9ss6:BR (2.6) BS01 rna N/A GO:0002181 ... P0C018 41542601
    1058072 9ss6:BR (2.6) BS02 rna N/A GO:0002181 ... P0C018 41542601
    1058073 9ss6:BS (2.6) BS01 rna N/A GO:0000027 ... P0A7K6 41542601
    1058074 9ss6:BS (2.6) BS02 rna N/A GO:0000027 ... P0A7K6 41542601
    1058075 9ss6:BT (2.6) BS01 rna N/A GO:0000027 ... P0A7L3 41542601
    1058076 9ss6:BU (2.6) BS01 rna N/A GO:0002181 ... P0AG48 41542601
    1058077 9ss6:BV (2.6) BS01 rna N/A GO:0002181 ... P61175 41542601
    1058078 9ss6:BW (2.6) BS01 rna N/A GO:0000027 ... P0ADZ0 41542601
    1058079 9ss6:BX (2.6) BS01 rna N/A GO:0000027 ... P60624 41542601
    1058080 9ss6:BY (2.6) BS01 rna N/A GO:0000027 ... P68919 41542601
    1058081 9ss7:A (1.95) BS01 FUC N/A N/A P12821 41631382
    1058082 9ss7:A (1.95) BS02 ZN N/A N/A P12821 41631382
    1058083 9ss7:A (1.95) BS03 A1JPY N/A N/A P12821 41631382
    1058084 9ss7:A (1.95) BS04 A1JPY N/A N/A P12821 41631382
    1058085 9ss8:A (2.0) BS01 ZN N/A N/A P12821 41631382
    1058086 9ss8:A (2.0) BS02 CA N/A N/A P12821 41631382
    1058087 9ss8:A (2.0) BS03 A1JPY N/A N/A P12821 41631382
    1058088 9ss8:B (2.0) BS01 ZN N/A N/A P12821 41631382
    1058089 9ss8:B (2.0) BS02 A1JPY N/A N/A P12821 41631382
    1058090 9ss9:A (2.5) BS01 ZN N/A N/A P12821 41631382
    1058091 9ss9:A (2.5) BS02 MCO N/A N/A P12821 41631382
    1058092 9ss9:B (2.5) BS01 ZN N/A N/A P12821 41631382
    1058093 9ss9:B (2.5) BS02 X8Z N/A N/A P12821 41631382
    1058094 9ssa:A (1.9) BS01 FUC N/A N/A P12821 41631382
    1058095 9ssa:A (1.9) BS02 ZN N/A N/A P12821 41631382
    1058096 9ssa:A (1.9) BS03 ZED N/A N/A P12821 41631382
    1058097 9ssb:A (2.0) BS01 FUC N/A N/A P12821 41631382
    1058098 9ssb:A (2.0) BS02 FUC N/A N/A P12821 41631382
    1058099 9ssb:A (2.0) BS03 ZN N/A N/A P12821 41631382
    1058100 9ssb:A (2.0) BS04 ZED N/A N/A P12821 41631382
    1058101 9ssb:A (2.0) BS05 CA N/A N/A P12821 41631382
    1058102 9ssb:B (2.0) BS01 ZN N/A N/A P12821 41631382
    1058103 9ssb:B (2.0) BS02 ZED N/A N/A P12821 41631382
    1058104 9ssb:B (2.0) BS03 CA N/A N/A P12821 41631382
    1058105 9ssb:C (2.0) BS01 ZN N/A N/A P12821 41631382
    1058106 9ssb:C (2.0) BS02 ZED N/A N/A P12821 41631382
    1058107 9ssb:C (2.0) BS03 CA N/A N/A P12821 41631382
    1058108 9ssb:D (2.0) BS01 ZN N/A N/A P12821 41631382
    1058109 9ssb:D (2.0) BS02 ZED N/A N/A P12821 41631382
    1058110 9ssb:D (2.0) BS03 CA N/A N/A P12821 41631382
    1058111 9ssd:A (1.51) BS01 PNM N/A N/A O70038 41589753
    1058112 9sse:A (1.79) BS01 AIX N/A N/A O70038 41589753
    1058113 9ssf:A (1.931) BS01 7EP N/A N/A O70038 41589753
    1058114 9ssg:A (1.642) BS01 A1JXD N/A N/A O70038 41589753
    1058115 9ssg:A (1.642) BS02 SO3 N/A N/A O70038 41589753
    1058116 9ssh:A (1.792) BS01 CEF N/A N/A O70038 41589753
    1058117 9ssi:A (1.64) BS01 CDS N/A N/A O70038 41589753
    1058118 9ssp:A (3.1) BS01 THH N/A GO:0000096 ... Q99707 N/A
    1058119 9ssr:A (2.84) BS01 THH N/A GO:0000096 ... Q99707 N/A
    1058120 9sss:A (3.01) BS01 B12 N/A GO:0000096 ... Q99707 N/A
    1058121 9sst:A (2.82) BS01 B12 N/A GO:0000096 ... Q99707 N/A
    1058122 9suy:A (2.27) BS01 ADP N/A N/A O14965
    Q9ULW0
    41847687
    1058123 9suy:A (2.27) BS02 A1JQV N/A N/A O14965
    Q9ULW0
    41847687
    1058124 9sv3:D (4.3) BS01 peptide N/A GO:0000122 ... P63104 N/A
    1058125 9sv3:D (4.3) BS02 A1JQT N/A GO:0000122 ... P63104 N/A
    1058126 9sv3:E (4.3) BS01 A1JQT N/A N/A P40337 N/A
    1058127 9sv3:I (4.3) BS01 peptide N/A GO:0000122 ... P63104 N/A
    1058128 9svx:A (2.7) BS01 dna N/A GO:0000278 ... O43543 41196948
    1058129 9svx:A (2.7) BS02 ATP N/A GO:0000278 ... O43543 41196948
    1058130 9svx:B (2.7) BS01 dna N/A GO:0000400 ... O75771 41196948
    1058131 9svx:B (2.7) BS02 ATP N/A GO:0000400 ... O75771 41196948
    1058132 9svx:B (2.7) BS03 ATP N/A GO:0000400 ... O75771 41196948
    1058133 9svx:C (2.7) BS01 dna N/A GO:0000400 ... O43502 41196948
    1058134 9svx:C (2.7) BS02 ADP N/A GO:0000400 ... O43502 41196948
    1058135 9svx:C (2.7) BS03 ATP N/A GO:0000400 ... O43502 41196948
    1058136 9svx:D (2.7) BS01 dna N/A GO:0000400 ... O43542 41196948
    1058137 9svx:D (2.7) BS02 ADP N/A GO:0000400 ... O43542 41196948
    1058138 9svx:D (2.7) BS03 ATP N/A GO:0000400 ... O43542 41196948
    1058139 9svx:E (2.7) BS01 dna N/A GO:0000150 ... Q06609 41196948
    1058140 9svx:E (2.7) BS02 ATP N/A GO:0000150 ... Q06609 41196948
    1058141 9svx:E (2.7) BS03 ATP N/A GO:0000150 ... Q06609 41196948
    1058142 9svx:E (2.7) BS04 CA N/A GO:0000150 ... Q06609 41196948
    1058143 9svx:F (2.7) BS01 dna N/A GO:0000150 ... Q06609 41196948
    1058144 9svx:F (2.7) BS02 ATP N/A GO:0000150 ... Q06609 41196948
    1058145 9svx:F (2.7) BS03 ATP N/A GO:0000150 ... Q06609 41196948
    1058146 9svx:F (2.7) BS04 CA N/A GO:0000150 ... Q06609 41196948
    1058147 9svx:G (2.7) BS01 dna N/A GO:0000150 ... Q06609 41196948
    1058148 9svx:G (2.7) BS02 ATP N/A GO:0000150 ... Q06609 41196948
    1058149 9svx:G (2.7) BS03 ATP N/A GO:0000150 ... Q06609 41196948
    1058150 9svx:G (2.7) BS04 CA N/A GO:0000150 ... Q06609 41196948
    1058151 9svx:H (2.7) BS01 ATP N/A GO:0000150 ... Q06609 41196948
    1058152 9svx:H (2.7) BS02 ATP N/A GO:0000150 ... Q06609 41196948
    1058153 9svx:H (2.7) BS03 CA N/A GO:0000150 ... Q06609 41196948
    1058154 9svx:I (2.7) BS01 ATP N/A GO:0000150 ... Q06609 41196948
    1058155 9svx:I (2.7) BS02 CA N/A GO:0000150 ... Q06609 41196948
    1058156 9svy:A (2.6) BS01 dna N/A GO:0000278 ... O43543 41196948
    1058157 9svy:A (2.6) BS02 ATP N/A GO:0000278 ... O43543 41196948
    1058158 9svy:B (2.6) BS01 dna N/A GO:0000400 ... O75771 41196948
    1058159 9svy:B (2.6) BS02 ATP N/A GO:0000400 ... O75771 41196948
    1058160 9svy:B (2.6) BS03 ATP N/A GO:0000400 ... O75771 41196948
    1058161 9svy:C (2.6) BS01 dna N/A GO:0000400 ... O43502 41196948
    1058162 9svy:C (2.6) BS02 ATP N/A GO:0000400 ... O43502 41196948
    1058163 9svy:C (2.6) BS03 ADP N/A GO:0000400 ... O43502 41196948
    1058164 9svy:D (2.6) BS01 dna N/A GO:0000400 ... O43542 41196948
    1058165 9svy:D (2.6) BS02 ADP N/A GO:0000400 ... O43542 41196948
    1058166 9svy:D (2.6) BS03 ATP N/A GO:0000400 ... O43542 41196948
    1058167 9svy:E (2.6) BS01 dna N/A GO:0000150 ... Q06609 41196948
    1058168 9svy:E (2.6) BS02 dna N/A GO:0000150 ... Q06609 41196948
    1058169 9svy:E (2.6) BS03 ATP N/A GO:0000150 ... Q06609 41196948
    1058170 9svy:E (2.6) BS04 ATP N/A GO:0000150 ... Q06609 41196948
    1058171 9svy:E (2.6) BS05 CA N/A GO:0000150 ... Q06609 41196948
    1058172 9svy:F (2.6) BS01 dna N/A GO:0000150 ... Q06609 41196948
    1058173 9svy:F (2.6) BS02 dna N/A GO:0000150 ... Q06609 41196948
    1058174 9svy:F (2.6) BS03 ATP N/A GO:0000150 ... Q06609 41196948
    1058175 9svy:F (2.6) BS04 ATP N/A GO:0000150 ... Q06609 41196948
    1058176 9svy:F (2.6) BS05 CA N/A GO:0000150 ... Q06609 41196948
    1058177 9svy:G (2.6) BS01 dna N/A GO:0000150 ... Q06609 41196948
    1058178 9svy:G (2.6) BS02 ATP N/A GO:0000150 ... Q06609 41196948
    1058179 9svy:G (2.6) BS03 ATP N/A GO:0000150 ... Q06609 41196948
    1058180 9svy:G (2.6) BS04 CA N/A GO:0000150 ... Q06609 41196948
    1058181 9svy:H (2.6) BS01 dna N/A GO:0000150 ... Q06609 41196948
    1058182 9svy:H (2.6) BS02 dna N/A GO:0000150 ... Q06609 41196948
    1058183 9svy:H (2.6) BS03 ATP N/A GO:0000150 ... Q06609 41196948
    1058184 9svy:H (2.6) BS04 ATP N/A GO:0000150 ... Q06609 41196948
    1058185 9svy:H (2.6) BS05 CA N/A GO:0000150 ... Q06609 41196948
    1058186 9svy:I (2.6) BS01 dna N/A GO:0000150 ... Q06609 41196948
    1058187 9svy:I (2.6) BS02 dna N/A GO:0000150 ... Q06609 41196948
    1058188 9svy:I (2.6) BS03 ATP N/A GO:0000150 ... Q06609 41196948
    1058189 9svy:I (2.6) BS04 ATP N/A GO:0000150 ... Q06609 41196948
    1058190 9svy:I (2.6) BS05 CA N/A GO:0000150 ... Q06609 41196948
    1058191 9svy:J (2.6) BS01 dna N/A GO:0000150 ... Q06609 41196948
    1058192 9svy:J (2.6) BS02 dna N/A GO:0000150 ... Q06609 41196948
    1058193 9svy:J (2.6) BS03 ATP N/A GO:0000150 ... Q06609 41196948
    1058194 9svy:J (2.6) BS04 ATP N/A GO:0000150 ... Q06609 41196948
    1058195 9svy:J (2.6) BS05 CA N/A GO:0000150 ... Q06609 41196948
    1058196 9svy:K (2.6) BS01 dna N/A GO:0000150 ... Q06609 41196948
    1058197 9svy:K (2.6) BS02 ATP N/A GO:0000150 ... Q06609 41196948
    1058198 9svy:K (2.6) BS03 CA N/A GO:0000150 ... Q06609 41196948
    1058199 9sw0:B (3.0) BS01 dna N/A GO:0000400 ... O75771 41196948
    1058200 9sw0:B (3.0) BS02 ATP N/A GO:0000400 ... O75771 41196948

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).