SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1058201 9sw0:C (3.0) BS01 dna N/A GO:0000400 ... O43502 41196948
    1058202 9sw0:C (3.0) BS02 dna N/A GO:0000400 ... O43502 41196948
    1058203 9sw0:C (3.0) BS03 ATP N/A GO:0000400 ... O43502 41196948
    1058204 9sw0:C (3.0) BS04 ADP N/A GO:0000400 ... O43502 41196948
    1058205 9sw0:D (3.0) BS01 dna N/A GO:0000400 ... O43542 41196948
    1058206 9sw0:D (3.0) BS02 ADP N/A GO:0000400 ... O43542 41196948
    1058207 9sw0:D (3.0) BS03 ATP N/A GO:0000400 ... O43542 41196948
    1058208 9sw0:D (3.0) BS04 MG N/A GO:0000400 ... O43542 41196948
    1058209 9sw0:E (3.0) BS01 dna N/A GO:0000150 ... Q06609 41196948
    1058210 9sw0:E (3.0) BS02 dna N/A GO:0000150 ... Q06609 41196948
    1058211 9sw0:E (3.0) BS03 ATP N/A GO:0000150 ... Q06609 41196948
    1058212 9sw0:E (3.0) BS04 ATP N/A GO:0000150 ... Q06609 41196948
    1058213 9sw0:F (3.0) BS01 dna N/A GO:0000150 ... Q06609 41196948
    1058214 9sw0:F (3.0) BS02 dna N/A GO:0000150 ... Q06609 41196948
    1058215 9sw0:F (3.0) BS03 ATP N/A GO:0000150 ... Q06609 41196948
    1058216 9sw0:F (3.0) BS04 CA N/A GO:0000150 ... Q06609 41196948
    1058217 9sw0:F (3.0) BS05 ATP N/A GO:0000150 ... Q06609 41196948
    1058218 9sw0:G (3.0) BS01 dna N/A GO:0000150 ... Q06609 41196948
    1058219 9sw0:G (3.0) BS02 dna N/A GO:0000150 ... Q06609 41196948
    1058220 9sw0:G (3.0) BS03 dna N/A GO:0000150 ... Q06609 41196948
    1058221 9sw0:G (3.0) BS04 ATP N/A GO:0000150 ... Q06609 41196948
    1058222 9sw0:G (3.0) BS05 ATP N/A GO:0000150 ... Q06609 41196948
    1058223 9sw0:G (3.0) BS06 CA N/A GO:0000150 ... Q06609 41196948
    1058224 9sw0:H (3.0) BS01 dna N/A GO:0000150 ... Q06609 41196948
    1058225 9sw0:H (3.0) BS02 ATP N/A GO:0000150 ... Q06609 41196948
    1058226 9sw0:H (3.0) BS03 ATP N/A GO:0000150 ... Q06609 41196948
    1058227 9sw0:H (3.0) BS04 CA N/A GO:0000150 ... Q06609 41196948
    1058228 9sw0:I (3.0) BS01 dna N/A GO:0000150 ... Q06609 41196948
    1058229 9sw0:I (3.0) BS02 ATP N/A GO:0000150 ... Q06609 41196948
    1058230 9sw0:I (3.0) BS03 ATP N/A GO:0000150 ... Q06609 41196948
    1058231 9sw0:I (3.0) BS04 CA N/A GO:0000150 ... Q06609 41196948
    1058232 9sw0:J (3.0) BS01 dna N/A GO:0000150 ... Q06609 41196948
    1058233 9sw0:J (3.0) BS02 ATP N/A GO:0000150 ... Q06609 41196948
    1058234 9sw0:J (3.0) BS03 CA N/A GO:0000150 ... Q06609 41196948
    1058235 9sw0:J (3.0) BS04 ATP N/A GO:0000150 ... Q06609 41196948
    1058236 9sw0:K (3.0) BS01 ATP N/A GO:0000150 ... Q06609 41196948
    1058237 9sw0:K (3.0) BS02 CA N/A GO:0000150 ... Q06609 41196948
    1058238 9swj:A (3.7) BS01 COA N/A GO:0003824 ... P53597 N/A
    1058239 9swj:C (3.7) BS01 COA N/A GO:0003824 ... P53597 N/A
    1058240 9swj:E (3.7) BS01 COA N/A GO:0003824 ... P53597 N/A
    1058241 9swj:G (3.7) BS01 COA N/A GO:0003824 ... P53597 N/A
    1058242 9swy:B (1.72) BS01 GN1 N/A GO:0003977 ... A0A229XUD0 41532565
    1058243 9sx6:G (3.57) BS01 dna N/A GO:0000976 ... P47463 41611686
    1058244 9sx6:G (3.57) BS02 dna N/A GO:0000976 ... P47463 41611686
    1058245 9sxi:A (1.74) BS01 A1JSF N/A N/A P28907 41704394
    1058246 9sxj:A (1.315) BS01 A1JRF N/A N/A P08581 N/A
    1058247 9syh:0 (1.89) BS01 rna N/A N/A N/A N/A
    1058248 9syh:1 (1.89) BS01 rna N/A N/A N/A N/A
    1058249 9syh:2 (1.89) BS01 rna N/A N/A N/A N/A
    1058250 9syh:3 (1.89) BS01 rna N/A N/A N/A N/A
    1058251 9syh:3 (1.89) BS02 ZN N/A N/A N/A N/A
    1058252 9syh:4 (1.89) BS01 rna N/A N/A N/A N/A
    1058253 9syh:4 (1.89) BS02 ZN N/A N/A N/A N/A
    1058254 9syh:B (1.89) BS01 rna N/A N/A N/A N/A
    1058255 9syh:C (1.89) BS01 rna N/A N/A N/A N/A
    1058256 9syh:D (1.89) BS01 rna N/A N/A N/A N/A
    1058257 9syh:E (1.89) BS01 rna N/A N/A N/A N/A
    1058258 9syh:E (1.89) BS02 rna N/A N/A N/A N/A
    1058259 9syh:F (1.89) BS01 rna N/A N/A N/A N/A
    1058260 9syh:G (1.89) BS01 rna N/A N/A N/A N/A
    1058261 9syh:G (1.89) BS02 rna N/A N/A N/A N/A
    1058262 9syh:H (1.89) BS01 rna N/A N/A N/A N/A
    1058263 9syh:I (1.89) BS01 rna N/A N/A N/A N/A
    1058264 9syh:I (1.89) BS02 rna N/A N/A N/A N/A
    1058265 9syh:J (1.89) BS01 rna N/A N/A N/A N/A
    1058266 9syh:K (1.89) BS01 rna N/A N/A N/A N/A
    1058267 9syh:L (1.89) BS01 rna N/A N/A N/A N/A
    1058268 9syh:M (1.89) BS01 rna N/A N/A N/A N/A
    1058269 9syh:M (1.89) BS02 rna N/A N/A N/A N/A
    1058270 9syh:N (1.89) BS01 rna N/A N/A N/A N/A
    1058271 9syh:O (1.89) BS01 rna N/A N/A N/A N/A
    1058272 9syh:O (1.89) BS02 rna N/A N/A N/A N/A
    1058273 9syh:P (1.89) BS01 rna N/A N/A N/A N/A
    1058274 9syh:Q (1.89) BS01 rna N/A N/A N/A N/A
    1058275 9syh:R (1.89) BS01 rna N/A N/A N/A N/A
    1058276 9syh:S (1.89) BS01 rna N/A N/A N/A N/A
    1058277 9syh:T (1.89) BS01 rna N/A N/A N/A N/A
    1058278 9syh:U (1.89) BS01 rna N/A N/A N/A N/A
    1058279 9syh:U (1.89) BS02 rna N/A N/A N/A N/A
    1058280 9syh:c (1.89) BS01 rna N/A N/A N/A N/A
    1058281 9syh:c (1.89) BS02 rna N/A N/A N/A N/A
    1058282 9syh:c (1.89) BS03 MG N/A N/A N/A N/A
    1058283 9syh:d (1.89) BS01 rna N/A N/A N/A N/A
    1058284 9syh:e (1.89) BS01 rna N/A N/A N/A N/A
    1058285 9syh:f (1.89) BS01 rna N/A N/A N/A N/A
    1058286 9syh:f (1.89) BS02 rna N/A N/A N/A N/A
    1058287 9syh:f (1.89) BS03 rna N/A N/A N/A N/A
    1058288 9syh:g (1.89) BS01 rna N/A N/A N/A N/A
    1058289 9syh:h (1.89) BS01 rna N/A N/A N/A N/A
    1058290 9syh:i (1.89) BS01 rna N/A N/A N/A N/A
    1058291 9syh:j (1.89) BS01 rna N/A N/A N/A N/A
    1058292 9syh:j (1.89) BS02 rna N/A N/A N/A N/A
    1058293 9syh:k (1.89) BS01 rna N/A N/A N/A N/A
    1058294 9syh:l (1.89) BS01 rna N/A N/A N/A N/A
    1058295 9syh:l (1.89) BS02 rna N/A N/A N/A N/A
    1058296 9syh:l (1.89) BS03 rna N/A N/A N/A N/A
    1058297 9syh:m (1.89) BS01 rna N/A N/A N/A N/A
    1058298 9syh:n (1.89) BS01 rna N/A N/A N/A N/A
    1058299 9syh:n (1.89) BS02 rna N/A N/A N/A N/A
    1058300 9syh:o (1.89) BS01 rna N/A N/A N/A N/A
    1058301 9syh:o (1.89) BS02 rna N/A N/A N/A N/A
    1058302 9syh:p (1.89) BS01 rna N/A N/A N/A N/A
    1058303 9syh:q (1.89) BS01 rna N/A N/A N/A N/A
    1058304 9syh:r (1.89) BS01 rna N/A N/A N/A N/A
    1058305 9syh:r (1.89) BS02 SR0 N/A N/A N/A N/A
    1058306 9syh:s (1.89) BS01 rna N/A N/A N/A N/A
    1058307 9syh:t (1.89) BS01 rna N/A N/A N/A N/A
    1058308 9syh:u (1.89) BS01 rna N/A N/A N/A N/A
    1058309 9syh:v (1.89) BS01 rna N/A N/A N/A N/A
    1058310 9syh:v (1.89) BS02 rna N/A N/A N/A N/A
    1058311 9syh:w (1.89) BS01 rna N/A N/A N/A N/A
    1058312 9syh:x (1.89) BS01 rna N/A N/A N/A N/A
    1058313 9syh:y (1.89) BS01 rna N/A N/A N/A N/A
    1058314 9syh:y (1.89) BS02 rna N/A N/A N/A N/A
    1058315 9syh:z (1.89) BS01 rna N/A N/A N/A N/A
    1058316 9syi:A (2.102) BS01 U3O N/A N/A Q15561 41780024
    1058317 9syi:A (2.102) BS02 A1ICN N/A N/A Q15561 41780024
    1058318 9syi:B (2.102) BS01 U3O N/A N/A Q15561 41780024
    1058319 9syi:B (2.102) BS02 A1ICN N/A N/A Q15561 41780024
    1058320 9syn:A (1.3) BS01 peptide N/A N/A Q15561 41780024
    1058321 9syn:A (1.3) BS02 WCF N/A N/A Q15561 41780024
    1058322 9syr:LA (3.55) BS01 rna N/A GO:0000448 ... P61927 41417911
    1058323 9syr:LA (3.55) BS02 rna N/A GO:0000448 ... P61927 41417911
    1058324 9syr:LA (3.55) BS03 ZN N/A GO:0000448 ... P61927 41417911
    1058325 9syr:LB (3.55) BS01 rna N/A GO:0002181 ... P63173 41417911
    1058326 9syr:LC (3.55) BS01 rna N/A GO:0002181 ... P62891 41417911
    1058327 9syr:LC (3.55) BS02 rna N/A GO:0002181 ... P62891 41417911
    1058328 9syr:LD (3.55) BS01 rna N/A N/A P0CG48 41417911
    1058329 9syr:LD (3.55) BS02 ZN N/A N/A P0CG48 41417911
    1058330 9syr:LE (3.55) BS01 rna N/A GO:0002181 ... P83881 41417911
    1058331 9syr:LE (3.55) BS02 ZN N/A GO:0002181 ... P83881 41417911
    1058332 9syr:LF (3.55) BS01 rna N/A GO:0002181 ... P61513 41417911
    1058333 9syr:LF (3.55) BS02 ZN N/A GO:0002181 ... P61513 41417911
    1058334 9syr:LG (3.55) BS01 rna N/A GO:0002181 ... P46779 41417911
    1058335 9syr:LH (3.55) BS01 rna N/A GO:0002181 ... P61313 41417911
    1058336 9syr:LH (3.55) BS02 rna N/A GO:0002181 ... P61313 41417911
    1058337 9syr:LI (3.55) BS01 rna N/A GO:0000463 ... P18124 41417911
    1058338 9syr:LI (3.55) BS02 rna N/A GO:0000463 ... P18124 41417911
    1058339 9syr:LJ (3.55) BS01 rna N/A GO:0000470 ... P62424 41417911
    1058340 9syr:LJ (3.55) BS02 rna N/A GO:0000470 ... P62424 41417911
    1058341 9syr:LK (3.55) BS01 rna N/A GO:0002181 ... P32969 41417911
    1058342 9syr:LM (3.55) BS01 rna N/A GO:0000122 ... P27635 41417911
    1058343 9syr:LM (3.55) BS02 rna N/A GO:0000122 ... P27635 41417911
    1058344 9syr:LM (3.55) BS03 rna N/A GO:0000122 ... P27635 41417911
    1058345 9syr:LN (3.55) BS01 rna N/A N/A B1AHH2 41417911
    1058346 9syr:LO (3.55) BS01 rna N/A GO:0000027 ... P62913 41417911
    1058347 9syr:LO (3.55) BS02 rna N/A GO:0000027 ... P62913 41417911
    1058348 9syr:LO (3.55) BS03 rna N/A GO:0000027 ... P62913 41417911
    1058349 9syr:LP (3.55) BS01 rna N/A GO:0002181 ... P26373 41417911
    1058350 9syr:LP (3.55) BS02 rna N/A GO:0002181 ... P26373 41417911
    1058351 9syr:LQ (3.55) BS01 rna N/A GO:0002181 ... P50914 41417911
    1058352 9syr:La (3.55) BS01 rna N/A GO:0002181 ... P62917 41417911
    1058353 9syr:Lb (3.55) BS01 rna N/A GO:0002181 ... P39023 41417911
    1058354 9syr:Lc (3.55) BS01 rna N/A GO:0002181 ... P36578 41417911
    1058355 9syr:Lc (3.55) BS02 rna N/A GO:0002181 ... P36578 41417911
    1058356 9syr:Ld (3.55) BS01 rna N/A GO:0000027 ... P46777 41417911
    1058357 9syr:Ld (3.55) BS02 rna N/A GO:0000027 ... P46777 41417911
    1058358 9syr:Ld (3.55) BS03 GTP N/A GO:0000027 ... P46777 41417911
    1058359 9syr:Le (3.55) BS01 rna N/A GO:0002181 ... Q02878 41417911
    1058360 9syr:Lf (3.55) BS01 rna N/A GO:0002181 ... P40429 41417911
    1058361 9syr:Lg (3.55) BS01 rna N/A GO:0002181 ... P18621 41417911
    1058362 9syr:Lg (3.55) BS02 rna N/A GO:0002181 ... P18621 41417911
    1058363 9syr:Lh (3.55) BS01 rna N/A GO:0002181 ... Q07020 41417911
    1058364 9syr:Li (3.55) BS01 rna N/A GO:0002181 ... P84098 41417911
    1058365 9syr:Li (3.55) BS02 rna N/A GO:0002181 ... P84098 41417911
    1058366 9syr:Lj (3.55) BS01 rna N/A GO:0002181 ... Q02543 41417911
    1058367 9syr:Lj (3.55) BS02 rna N/A GO:0002181 ... Q02543 41417911
    1058368 9syr:Lk (3.55) BS01 rna N/A GO:0001650 ... P46778 41417911
    1058369 9syr:Lk (3.55) BS02 rna N/A GO:0001650 ... P46778 41417911
    1058370 9syr:Ll (3.55) BS01 rna N/A GO:0002181 ... P35268 41417911
    1058371 9syr:Lm (3.55) BS01 rna N/A GO:0000122 ... P62829 41417911
    1058372 9syr:Ln (3.55) BS01 rna N/A GO:0002181 ... P83731 41417911
    1058373 9syr:Ln (3.55) BS02 rna N/A GO:0002181 ... P83731 41417911
    1058374 9syr:Lo (3.55) BS01 rna N/A GO:0002181 ... P62750 41417911
    1058375 9syr:Lo (3.55) BS02 rna N/A GO:0002181 ... P62750 41417911
    1058376 9syr:Lp (3.55) BS01 rna N/A GO:0002181 ... P61254 41417911
    1058377 9syr:Lp (3.55) BS02 rna N/A GO:0002181 ... P61254 41417911
    1058378 9syr:Lq (3.55) BS01 rna N/A GO:0002181 ... P61353 41417911
    1058379 9syr:Lr (3.55) BS01 rna N/A GO:0002181 ... P46776 41417911
    1058380 9syr:Ls (3.55) BS01 rna N/A GO:0002181 ... P47914 41417911
    1058381 9syr:Lt (3.55) BS01 rna N/A GO:0002181 ... P62888 41417911
    1058382 9syr:Lu (3.55) BS01 rna N/A GO:0002181 ... P62899 41417911
    1058383 9syr:Lv (3.55) BS01 rna N/A GO:0002181 ... P62910 41417911
    1058384 9syr:Lw (3.55) BS01 rna N/A GO:0002181 ... P18077 41417911
    1058385 9syr:Lx (3.55) BS01 rna N/A GO:0002181 ... P49207 41417911
    1058386 9syr:Lx (3.55) BS02 ZN N/A GO:0002181 ... P49207 41417911
    1058387 9syr:Ly (3.55) BS01 rna N/A GO:0000463 ... P42766 41417911
    1058388 9syr:Ly (3.55) BS02 rna N/A GO:0000463 ... P42766 41417911
    1058389 9syr:Lz (3.55) BS01 rna N/A GO:0002181 ... Q9Y3U8 41417911
    1058390 9syr:Na (3.55) BS01 rna N/A GO:0000122 ... Q13765 41417911
    1058391 9syr:Nb (3.55) BS01 rna N/A N/A P20290 41417911
    1058392 9syr:Nd (3.55) BS01 rna N/A GO:0000794 ... Q12306
    Q86UY6
    41417911
    1058393 9syr:Nd (3.55) BS02 COA N/A GO:0000794 ... Q12306
    Q86UY6
    41417911
    1058394 9syr:Nm (3.55) BS01 ZN N/A GO:0004177 ... P53582 41417911
    1058395 9syr:Nm (3.55) BS02 ZN N/A GO:0004177 ... P53582 41417911
    1058396 9syr:SA (3.55) BS01 rna N/A GO:0002181 ... P62241 41417911
    1058397 9syr:SA (3.55) BS02 rna N/A GO:0002181 ... P62241 41417911
    1058398 9syr:SB (3.55) BS01 rna N/A GO:0002181 ... P46781 41417911
    1058399 9syr:SC (3.55) BS01 rna N/A GO:0002181 ... P46782 41417911
    1058400 9syr:SD (3.55) BS01 rna N/A GO:0002181 ... P62280 41417911

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).