SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1058401 9syr:SE (3.55) BS01 rna N/A GO:0002181 ... P46783 41417911
    1058402 9syr:SF (3.55) BS01 rna N/A GO:0000462 ... P62277 41417911
    1058403 9syr:SG (3.55) BS01 rna N/A GO:0000028 ... P62263 41417911
    1058404 9syr:SH (3.55) BS01 rna N/A GO:0002181 ... P25398 41417911
    1058405 9syr:Sa (3.55) BS01 rna N/A N/A K7ELC2 41417911
    1058406 9syr:Sb (3.55) BS01 rna N/A GO:0002181 ... P08708 41417911
    1058407 9syr:Sc (3.55) BS01 rna N/A GO:0000462 ... P62249 41417911
    1058408 9syr:Sd (3.55) BS01 rna N/A GO:0002181 ... P62269 41417911
    1058409 9syr:Sf (3.55) BS01 rna N/A GO:0002181 ... P62244 41417911
    1058410 9syr:Sg (3.55) BS01 rna N/A GO:0002181 ... P62266 41417911
    1058411 9syr:Sh (3.55) BS01 rna N/A GO:0002181 ... P62847 41417911
    1058412 9syr:Si (3.55) BS01 rna N/A GO:0000028 ... P39019 41417911
    1058413 9syr:Sj (3.55) BS01 rna N/A GO:0002181 ... P62854 41417911
    1058414 9syr:Sj (3.55) BS02 ZN N/A GO:0002181 ... P62854 41417911
    1058415 9syr:Sk (3.55) BS01 rna N/A GO:0002181 ... P42677 41417911
    1058416 9syr:Sl (3.55) BS01 rna N/A GO:0002181 ... P60866 41417911
    1058417 9syr:Sm (3.55) BS01 rna N/A GO:0002181 ... P62851 41417911
    1058418 9syr:Sm (3.55) BS02 rna N/A GO:0002181 ... P62851 41417911
    1058419 9syr:Sn (3.55) BS01 rna N/A GO:0002181 ... P62861 41417911
    1058420 9syr:So (3.55) BS01 rna N/A GO:0000028 ... P62857 41417911
    1058421 9syr:Sp (3.55) BS01 rna N/A GO:0002181 ... P62273 41417911
    1058422 9syr:Sp (3.55) BS02 ZN N/A GO:0002181 ... P62273 41417911
    1058423 9syr:Sr (3.55) BS01 rna N/A GO:0002181 ... P62979 41417911
    1058424 9syr:Sr (3.55) BS02 ZN N/A GO:0002181 ... P62979 41417911
    1058425 9syr:Ss (3.55) BS01 rna N/A GO:0001891 ... P63244 41417911
    1058426 9syr:St (3.55) BS01 rna N/A GO:0000028 ... P08865 41417911
    1058427 9syr:Su (3.55) BS01 rna N/A GO:0002181 ... P61247 41417911
    1058428 9syr:Sv (3.55) BS01 rna N/A GO:0002181 ... P15880 41417911
    1058429 9syr:Sw (3.55) BS01 rna N/A GO:0002181 ... P62701 41417911
    1058430 9syr:Sx (3.55) BS01 rna N/A GO:0001228 ... P23396 41417911
    1058431 9syr:Sy (3.55) BS01 rna N/A GO:0002181 ... P62753 41417911
    1058432 9syr:Sz (3.55) BS01 rna N/A GO:0002181 ... P62081 41417911
    1058433 9syu:A (2.98) BS01 ADP N/A GO:0000146 ... P35579 N/A
    1058434 9syu:A (2.98) BS02 MG N/A GO:0000146 ... P35579 N/A
    1058435 9syu:B (2.98) BS01 ADP N/A GO:0000146 ... P35579 N/A
    1058436 9syu:E (2.98) BS01 MG N/A GO:0000146 ... Q5E9E2 N/A
    1058437 9syu:F (2.98) BS01 MG N/A GO:0000146 ... Q5E9E2 N/A
    1058438 9sz7:B (3.87) BS01 dna N/A GO:0000976 ... P47463 41611686
    1058439 9sz7:B (3.87) BS02 dna N/A GO:0000976 ... P47463 41611686
    1058440 9sz7:C (3.87) BS01 dna N/A GO:0000976 ... P47463 41611686
    1058441 9sz7:D (3.87) BS01 dna N/A GO:0000976 ... P47463 41611686
    1058442 9sz7:D (3.87) BS02 dna N/A GO:0000976 ... P47463 41611686
    1058443 9sz7:E (3.87) BS01 dna N/A GO:0000976 ... P47463 41611686
    1058444 9sz7:E (3.87) BS02 dna N/A GO:0000976 ... P47463 41611686
    1058445 9sz7:F (3.87) BS01 dna N/A GO:0000976 ... P47463 41611686
    1058446 9sz7:F (3.87) BS02 dna N/A GO:0000976 ... P47463 41611686
    1058447 9sz7:H (3.87) BS01 dna N/A GO:0000976 ... P47463 41611686
    1058448 9sz7:H (3.87) BS02 dna N/A GO:0000976 ... P47463 41611686
    1058449 9sz7:J (3.87) BS01 dna N/A GO:0000976 ... P47463 41611686
    1058450 9sz7:J (3.87) BS02 dna N/A GO:0000976 ... P47463 41611686
    1058451 9sz7:K (3.87) BS01 dna N/A GO:0000976 ... P47463 41611686
    1058452 9sz7:K (3.87) BS02 dna N/A GO:0000976 ... P47463 41611686
    1058453 9szj:A (2.289) BS01 A1JRF N/A N/A P08581 N/A
    1058454 9szr:A (6.3) BS01 ADP N/A GO:0000146 ... P35579 N/A
    1058455 9szr:B (6.3) BS01 ADP N/A GO:0000146 ... P35579 N/A
    1058456 9szr:E (6.3) BS01 MG N/A GO:0000146 ... Q5E9E2 N/A
    1058457 9szr:F (6.3) BS01 MG N/A GO:0000146 ... Q5E9E2 N/A
    1058458 9szt:A (3.5) BS01 ATP N/A GO:0000502 ... P35998 41719407
    1058459 9szt:B (3.5) BS01 ADP N/A GO:0000502 ... P62191 41719407
    1058460 9szt:C (3.5) BS01 ADP N/A GO:0000502 ... P62195 41719407
    1058461 9szt:D (3.5) BS01 ADP N/A GO:0000502 ... P43686 41719407
    1058462 9szt:E (3.5) BS01 ADP N/A GO:0005634 ... A0A087X2I1 41719407
    1058463 9szt:F (3.5) BS01 ADP N/A GO:0000502 ... P17980 41719407
    1058464 9szv:A (3.6) BS01 ATP N/A GO:0000502 ... P35998 41719407
    1058465 9szv:B (3.6) BS01 ADP N/A GO:0000502 ... P62191 41719407
    1058466 9szv:C (3.6) BS01 ADP N/A GO:0000502 ... P62195 41719407
    1058467 9szv:D (3.6) BS01 ADP N/A GO:0000502 ... P43686 41719407
    1058468 9szv:E (3.6) BS01 ADP N/A GO:0005634 ... A0A087X2I1 41719407
    1058469 9szv:F (3.6) BS01 ADP N/A GO:0000502 ... P17980 41719407
    1058470 9t05:AAA (2.169) BS01 A1JTN N/A GO:0009535 ... O19910 41373647
    1058471 9t05:BBB (2.169) BS01 A1JTN N/A N/A O19909 41373647
    1058472 9t05:DDD (2.169) BS01 A1JTN N/A N/A O19909 41373647
    1058473 9t05:EEE (2.169) BS01 A1JTN N/A GO:0009535 ... O19910 41373647
    1058474 9t05:FFF (2.169) BS01 A1JTN N/A N/A O19909 41373647
    1058475 9t05:GGG (2.169) BS01 A1JTN N/A GO:0009535 ... O19910 41373647
    1058476 9t05:HHH (2.169) BS01 A1JTN N/A N/A O19909 41373647
    1058477 9t05:III (2.169) BS01 A1JTN N/A GO:0009535 ... O19910 41373647
    1058478 9t05:JJJ (2.169) BS01 A1JTN N/A N/A O19909 41373647
    1058479 9t05:LLL (2.169) BS01 A1JTN N/A N/A O19909 41373647
    1058480 9t08:A (1.462) BS01 A1JSO N/A N/A P08581 N/A
    1058481 9t09:A (1.34) BS01 ZN N/A N/A P30305 N/A
    1058482 9t0a:A (2.04) BS01 A1JSQ N/A N/A P30305 N/A
    1058483 9t0a:A (2.04) BS02 A1JSP N/A N/A P30305 N/A
    1058484 9t0b:A (1.539) BS01 A1JSO N/A N/A P08581 N/A
    1058485 9t0d:A (1.196) BS01 A1JSR N/A N/A P08581 N/A
    1058486 9t0h:B (1.91) BS01 CA N/A N/A P62166 41785832
    1058487 9t0h:B (1.91) BS02 CA N/A N/A P62166 41785832
    1058488 9t0h:B (1.91) BS03 CA N/A N/A P62166 41785832
    1058489 9t0h:B (1.91) BS04 H9F N/A N/A P62166 41785832
    1058490 9t0k:A (1.87) BS01 NDP N/A GO:0000302 ... P04040 N/A
    1058491 9t0k:A (1.87) BS02 HEM N/A GO:0000302 ... P04040 N/A
    1058492 9t0l:A (1.73) BS01 HEM N/A GO:0004096 ... B6EXX7 N/A
    1058493 9t0l:A (1.73) BS02 NDP N/A GO:0004096 ... B6EXX7 N/A
    1058494 9t0m:A (1.9) BS01 HEM N/A GO:0004096 ... P29422 N/A
    1058495 9t0m:A (1.9) BS02 NDP N/A GO:0004096 ... P29422 N/A
    1058496 9t0y:0 (1.87) BS01 rna N/A N/A N/A N/A
    1058497 9t0y:1 (1.87) BS01 rna N/A N/A N/A N/A
    1058498 9t0y:2 (1.87) BS01 rna N/A N/A N/A N/A
    1058499 9t0y:3 (1.87) BS01 rna N/A N/A N/A N/A
    1058500 9t0y:3 (1.87) BS02 ZN N/A N/A N/A N/A
    1058501 9t0y:4 (1.87) BS01 rna N/A N/A N/A N/A
    1058502 9t0y:4 (1.87) BS02 ZN N/A N/A N/A N/A
    1058503 9t0y:B (1.87) BS01 rna N/A N/A N/A N/A
    1058504 9t0y:C (1.87) BS01 rna N/A N/A N/A N/A
    1058505 9t0y:D (1.87) BS01 rna N/A N/A N/A N/A
    1058506 9t0y:E (1.87) BS01 rna N/A N/A N/A N/A
    1058507 9t0y:E (1.87) BS02 rna N/A N/A N/A N/A
    1058508 9t0y:F (1.87) BS01 rna N/A N/A N/A N/A
    1058509 9t0y:G (1.87) BS01 rna N/A N/A N/A N/A
    1058510 9t0y:G (1.87) BS02 rna N/A N/A N/A N/A
    1058511 9t0y:H (1.87) BS01 rna N/A N/A N/A N/A
    1058512 9t0y:I (1.87) BS01 rna N/A N/A N/A N/A
    1058513 9t0y:I (1.87) BS02 rna N/A N/A N/A N/A
    1058514 9t0y:J (1.87) BS01 rna N/A N/A N/A N/A
    1058515 9t0y:K (1.87) BS01 rna N/A N/A N/A N/A
    1058516 9t0y:L (1.87) BS01 rna N/A N/A N/A N/A
    1058517 9t0y:M (1.87) BS01 rna N/A N/A N/A N/A
    1058518 9t0y:M (1.87) BS02 rna N/A N/A N/A N/A
    1058519 9t0y:N (1.87) BS01 rna N/A N/A N/A N/A
    1058520 9t0y:O (1.87) BS01 rna N/A N/A N/A N/A
    1058521 9t0y:O (1.87) BS02 rna N/A N/A N/A N/A
    1058522 9t0y:P (1.87) BS01 rna N/A N/A N/A N/A
    1058523 9t0y:Q (1.87) BS01 rna N/A N/A N/A N/A
    1058524 9t0y:R (1.87) BS01 rna N/A N/A N/A N/A
    1058525 9t0y:S (1.87) BS01 rna N/A N/A N/A N/A
    1058526 9t0y:T (1.87) BS01 rna N/A N/A N/A N/A
    1058527 9t0y:U (1.87) BS01 rna N/A N/A N/A N/A
    1058528 9t0y:U (1.87) BS02 rna N/A N/A N/A N/A
    1058529 9t0y:c (1.87) BS01 rna N/A N/A N/A N/A
    1058530 9t0y:c (1.87) BS02 MG N/A N/A N/A N/A
    1058531 9t0y:d (1.87) BS01 rna N/A N/A N/A N/A
    1058532 9t0y:e (1.87) BS01 rna N/A N/A N/A N/A
    1058533 9t0y:f (1.87) BS01 rna N/A N/A N/A N/A
    1058534 9t0y:f (1.87) BS02 rna N/A N/A N/A N/A
    1058535 9t0y:f (1.87) BS03 rna N/A N/A N/A N/A
    1058536 9t0y:g (1.87) BS01 rna N/A N/A N/A N/A
    1058537 9t0y:h (1.87) BS01 rna N/A N/A N/A N/A
    1058538 9t0y:i (1.87) BS01 rna N/A N/A N/A N/A
    1058539 9t0y:j (1.87) BS01 rna N/A N/A N/A N/A
    1058540 9t0y:j (1.87) BS02 rna N/A N/A N/A N/A
    1058541 9t0y:k (1.87) BS01 rna N/A N/A N/A N/A
    1058542 9t0y:l (1.87) BS01 rna N/A N/A N/A N/A
    1058543 9t0y:l (1.87) BS02 rna N/A N/A N/A N/A
    1058544 9t0y:l (1.87) BS03 rna N/A N/A N/A N/A
    1058545 9t0y:m (1.87) BS01 rna N/A N/A N/A N/A
    1058546 9t0y:n (1.87) BS01 rna N/A N/A N/A N/A
    1058547 9t0y:n (1.87) BS02 rna N/A N/A N/A N/A
    1058548 9t0y:o (1.87) BS01 rna N/A N/A N/A N/A
    1058549 9t0y:o (1.87) BS02 rna N/A N/A N/A N/A
    1058550 9t0y:p (1.87) BS01 rna N/A N/A N/A N/A
    1058551 9t0y:q (1.87) BS01 rna N/A N/A N/A N/A
    1058552 9t0y:r (1.87) BS01 rna N/A N/A N/A N/A
    1058553 9t0y:r (1.87) BS02 SR0 N/A N/A N/A N/A
    1058554 9t0y:s (1.87) BS01 rna N/A N/A N/A N/A
    1058555 9t0y:t (1.87) BS01 rna N/A N/A N/A N/A
    1058556 9t0y:u (1.87) BS01 rna N/A N/A N/A N/A
    1058557 9t0y:v (1.87) BS01 rna N/A N/A N/A N/A
    1058558 9t0y:v (1.87) BS02 rna N/A N/A N/A N/A
    1058559 9t0y:v (1.87) BS03 rna N/A N/A N/A N/A
    1058560 9t0y:w (1.87) BS01 rna N/A N/A N/A N/A
    1058561 9t0y:x (1.87) BS01 rna N/A N/A N/A N/A
    1058562 9t0y:y (1.87) BS01 rna N/A N/A N/A N/A
    1058563 9t0y:y (1.87) BS02 rna N/A N/A N/A N/A
    1058564 9t0y:z (1.87) BS01 rna N/A N/A N/A N/A
    1058565 9t19:d (2.41) BS01 rna N/A N/A N/A N/A
    1058566 9t19:d (2.41) BS02 peptide N/A N/A N/A N/A
    1058567 9t19:l (2.41) BS01 rna N/A N/A N/A N/A
    1058568 9t19:l (2.41) BS02 rna N/A N/A N/A N/A
    1058569 9t19:l (2.41) BS03 peptide N/A N/A N/A N/A
    1058570 9t1a:d (2.39) BS01 rna N/A N/A N/A N/A
    1058571 9t1a:d (2.39) BS02 peptide N/A N/A N/A N/A
    1058572 9t1a:l (2.39) BS01 rna N/A N/A N/A N/A
    1058573 9t1a:l (2.39) BS02 rna N/A N/A N/A N/A
    1058574 9t1a:l (2.39) BS03 peptide N/A N/A N/A N/A
    1058575 9t1b:d (2.32) BS01 rna N/A N/A N/A N/A
    1058576 9t1b:d (2.32) BS02 peptide N/A N/A N/A N/A
    1058577 9t1b:l (2.32) BS01 rna N/A N/A N/A N/A
    1058578 9t1b:l (2.32) BS02 rna N/A N/A N/A N/A
    1058579 9t1b:l (2.32) BS03 peptide N/A N/A N/A N/A
    1058580 9t1c:d (3.07) BS01 rna N/A N/A N/A N/A
    1058581 9t1c:d (3.07) BS02 peptide N/A N/A N/A N/A
    1058582 9t1c:l (3.07) BS01 rna N/A N/A N/A N/A
    1058583 9t1c:l (3.07) BS02 rna N/A N/A N/A N/A
    1058584 9t1e:d (2.28) BS01 rna N/A N/A N/A N/A
    1058585 9t1e:d (2.28) BS02 peptide N/A N/A N/A N/A
    1058586 9t1e:l (2.28) BS01 rna N/A N/A N/A N/A
    1058587 9t1e:l (2.28) BS02 rna N/A N/A N/A N/A
    1058588 9t1e:l (2.28) BS03 peptide N/A N/A N/A N/A
    1058589 9t1f:d (2.32) BS01 rna N/A N/A N/A N/A
    1058590 9t1f:d (2.32) BS02 peptide N/A N/A N/A N/A
    1058591 9t1f:l (2.32) BS01 rna N/A N/A N/A N/A
    1058592 9t1f:l (2.32) BS02 rna N/A N/A N/A N/A
    1058593 9t1f:l (2.32) BS03 rna N/A N/A N/A N/A
    1058594 9t1f:l (2.32) BS04 peptide N/A N/A N/A N/A
    1058595 9t1g:d (2.29) BS01 rna N/A N/A N/A N/A
    1058596 9t1g:d (2.29) BS02 peptide N/A N/A N/A N/A
    1058597 9t1g:l (2.29) BS01 rna N/A N/A N/A N/A
    1058598 9t1g:l (2.29) BS02 rna N/A N/A N/A N/A
    1058599 9t1g:l (2.29) BS03 peptide N/A N/A N/A N/A
    1058600 9t1h:d (2.33) BS01 rna N/A N/A N/A N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).