SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1058801 9t5v:A (3.06) BS04 CA N/A N/A P11215 N/A
    1058802 9t5v:B (3.06) BS01 MN N/A N/A P05107 N/A
    1058803 9t5v:B (3.06) BS02 CA N/A N/A P05107 N/A
    1058804 9t5v:B (3.06) BS03 CA N/A N/A P05107 N/A
    1058805 9t5w:A (2.74) BS01 CA N/A N/A P11215 N/A
    1058806 9t5w:A (2.74) BS02 CA N/A N/A P11215 N/A
    1058807 9t5w:A (2.74) BS03 CA N/A N/A P11215 N/A
    1058808 9t5w:B (2.74) BS01 MN N/A N/A P05107 N/A
    1058809 9t5w:B (2.74) BS02 CA N/A N/A P05107 N/A
    1058810 9t5w:B (2.74) BS03 CA N/A N/A P05107 N/A
    1058811 9t5z:A (3.1) BS01 CA N/A N/A P11215 N/A
    1058812 9t5z:A (3.1) BS02 CA N/A N/A P11215 N/A
    1058813 9t5z:A (3.1) BS03 CA N/A N/A P11215 N/A
    1058814 9t5z:B (3.1) BS01 MN N/A N/A P05107 N/A
    1058815 9t5z:B (3.1) BS02 CA N/A N/A P05107 N/A
    1058816 9t5z:B (3.1) BS03 CA N/A N/A P05107 N/A
    1058817 9t62:A (2.4) BS01 CU N/A N/A D6RTB9 N/A
    1058818 9t62:A (2.4) BS02 CU N/A N/A D6RTB9 N/A
    1058819 9t62:B (2.4) BS01 CU N/A N/A D6RTB9 N/A
    1058820 9t62:B (2.4) BS02 CU N/A N/A D6RTB9 N/A
    1058821 9t6k:A (1.133) BS01 A1JT6 N/A N/A P08581 N/A
    1058822 9t6m:0 (1.87) BS01 rna N/A N/A N/A N/A
    1058823 9t6m:1 (1.87) BS01 rna N/A N/A N/A N/A
    1058824 9t6m:2 (1.87) BS01 rna N/A N/A N/A N/A
    1058825 9t6m:3 (1.87) BS01 rna N/A N/A N/A N/A
    1058826 9t6m:3 (1.87) BS02 ZN N/A N/A N/A N/A
    1058827 9t6m:4 (1.87) BS01 rna N/A N/A N/A N/A
    1058828 9t6m:4 (1.87) BS02 ZN N/A N/A N/A N/A
    1058829 9t6m:B (1.87) BS01 rna N/A N/A N/A N/A
    1058830 9t6m:C (1.87) BS01 rna N/A N/A N/A N/A
    1058831 9t6m:D (1.87) BS01 rna N/A N/A N/A N/A
    1058832 9t6m:E (1.87) BS01 rna N/A N/A N/A N/A
    1058833 9t6m:E (1.87) BS02 rna N/A N/A N/A N/A
    1058834 9t6m:F (1.87) BS01 rna N/A N/A N/A N/A
    1058835 9t6m:G (1.87) BS01 rna N/A N/A N/A N/A
    1058836 9t6m:G (1.87) BS02 rna N/A N/A N/A N/A
    1058837 9t6m:H (1.87) BS01 rna N/A N/A N/A N/A
    1058838 9t6m:I (1.87) BS01 rna N/A N/A N/A N/A
    1058839 9t6m:I (1.87) BS02 rna N/A N/A N/A N/A
    1058840 9t6m:J (1.87) BS01 rna N/A N/A N/A N/A
    1058841 9t6m:K (1.87) BS01 rna N/A N/A N/A N/A
    1058842 9t6m:L (1.87) BS01 rna N/A N/A N/A N/A
    1058843 9t6m:M (1.87) BS01 rna N/A N/A N/A N/A
    1058844 9t6m:M (1.87) BS02 rna N/A N/A N/A N/A
    1058845 9t6m:N (1.87) BS01 rna N/A N/A N/A N/A
    1058846 9t6m:O (1.87) BS01 rna N/A N/A N/A N/A
    1058847 9t6m:O (1.87) BS02 rna N/A N/A N/A N/A
    1058848 9t6m:P (1.87) BS01 rna N/A N/A N/A N/A
    1058849 9t6m:Q (1.87) BS01 rna N/A N/A N/A N/A
    1058850 9t6m:R (1.87) BS01 rna N/A N/A N/A N/A
    1058851 9t6m:S (1.87) BS01 rna N/A N/A N/A N/A
    1058852 9t6m:T (1.87) BS01 rna N/A N/A N/A N/A
    1058853 9t6m:U (1.87) BS01 rna N/A N/A N/A N/A
    1058854 9t6m:U (1.87) BS02 rna N/A N/A N/A N/A
    1058855 9t6m:c (1.87) BS01 rna N/A N/A N/A N/A
    1058856 9t6m:c (1.87) BS02 MG N/A N/A N/A N/A
    1058857 9t6m:d (1.87) BS01 rna N/A N/A N/A N/A
    1058858 9t6m:e (1.87) BS01 rna N/A N/A N/A N/A
    1058859 9t6m:f (1.87) BS01 rna N/A N/A N/A N/A
    1058860 9t6m:f (1.87) BS02 rna N/A N/A N/A N/A
    1058861 9t6m:f (1.87) BS03 rna N/A N/A N/A N/A
    1058862 9t6m:g (1.87) BS01 rna N/A N/A N/A N/A
    1058863 9t6m:h (1.87) BS01 rna N/A N/A N/A N/A
    1058864 9t6m:i (1.87) BS01 rna N/A N/A N/A N/A
    1058865 9t6m:j (1.87) BS01 rna N/A N/A N/A N/A
    1058866 9t6m:j (1.87) BS02 rna N/A N/A N/A N/A
    1058867 9t6m:k (1.87) BS01 rna N/A N/A N/A N/A
    1058868 9t6m:l (1.87) BS01 rna N/A N/A N/A N/A
    1058869 9t6m:l (1.87) BS02 rna N/A N/A N/A N/A
    1058870 9t6m:l (1.87) BS03 rna N/A N/A N/A N/A
    1058871 9t6m:m (1.87) BS01 rna N/A N/A N/A N/A
    1058872 9t6m:n (1.87) BS01 rna N/A N/A N/A N/A
    1058873 9t6m:n (1.87) BS02 rna N/A N/A N/A N/A
    1058874 9t6m:o (1.87) BS01 rna N/A N/A N/A N/A
    1058875 9t6m:o (1.87) BS02 rna N/A N/A N/A N/A
    1058876 9t6m:p (1.87) BS01 rna N/A N/A N/A N/A
    1058877 9t6m:q (1.87) BS01 rna N/A N/A N/A N/A
    1058878 9t6m:r (1.87) BS01 rna N/A N/A N/A N/A
    1058879 9t6m:r (1.87) BS02 SR0 N/A N/A N/A N/A
    1058880 9t6m:s (1.87) BS01 rna N/A N/A N/A N/A
    1058881 9t6m:t (1.87) BS01 rna N/A N/A N/A N/A
    1058882 9t6m:u (1.87) BS01 rna N/A N/A N/A N/A
    1058883 9t6m:v (1.87) BS01 rna N/A N/A N/A N/A
    1058884 9t6m:v (1.87) BS02 rna N/A N/A N/A N/A
    1058885 9t6m:w (1.87) BS01 rna N/A N/A N/A N/A
    1058886 9t6m:x (1.87) BS01 rna N/A N/A N/A N/A
    1058887 9t6m:y (1.87) BS01 rna N/A N/A N/A N/A
    1058888 9t6m:y (1.87) BS02 rna N/A N/A N/A N/A
    1058889 9t6m:z (1.87) BS01 rna N/A N/A N/A N/A
    1058890 9t6o:A (1.597) BS01 CU N/A N/A P25006 41641581
    1058891 9t6o:A (1.597) BS02 CU N/A N/A P25006 41641581
    1058892 9t6p:A (2.008) BS01 CU N/A N/A P25006 41641581
    1058893 9t6p:A (2.008) BS02 CU N/A N/A P25006 41641581
    1058894 9t6q:A (1.465) BS01 FRU N/A N/A P25006 41641581
    1058895 9t6q:A (1.465) BS02 CU N/A N/A P25006 41641581
    1058896 9t6q:A (1.465) BS03 CU N/A N/A P25006 41641581
    1058897 9t6u:A (1.5) BS01 CU N/A N/A P25006 41641581
    1058898 9t6u:A (1.5) BS02 CU N/A N/A P25006 41641581
    1058899 9t6v:A (1.243) BS01 HEM N/A GO:0003009 ... P68082 41641581
    1058900 9t6w:A (1.71) BS01 HEM N/A GO:0003009 ... P68082 41641581
    1058901 9t6x:A (1.1) BS01 HEM N/A GO:0003009 ... P68082 41641581
    1058902 9t6y:A (1.03) BS01 HEM N/A GO:0003009 ... P68082 41641581
    1058903 9t74:B (3.46) BS01 rna N/A GO:0005515 ... P0DTC2 N/A
    1058904 9t7f:C (1.5) BS01 4PQ N/A N/A N/A 41497624
    1058905 9t7f:C (1.5) BS02 ZN N/A N/A N/A 41497624
    1058906 9t7u:AAA (1.7) BS01 CU1 N/A GO:0004365 ... Q5HHP5 41419077
    1058907 9t7u:BBB (1.7) BS01 CU1 N/A GO:0004365 ... Q5HHP5 41419077
    1058908 9t7u:CCC (1.7) BS01 CU1 N/A GO:0004365 ... Q5HHP5 41419077
    1058909 9t7u:DDD (1.7) BS01 CU1 N/A GO:0004365 ... Q5HHP5 41419077
    1058910 9t8k:d (2.18) BS01 rna N/A N/A N/A N/A
    1058911 9t8k:l (2.18) BS01 rna N/A N/A N/A N/A
    1058912 9t8k:l (2.18) BS02 rna N/A N/A N/A N/A
    1058913 9t8l:d (2.21) BS01 rna N/A N/A N/A N/A
    1058914 9t8l:l (2.21) BS01 rna N/A N/A N/A N/A
    1058915 9t8l:l (2.21) BS02 rna N/A N/A N/A N/A
    1058916 9t8m:d (2.2) BS01 rna N/A N/A N/A N/A
    1058917 9t8m:l (2.2) BS01 rna N/A N/A N/A N/A
    1058918 9t8m:l (2.2) BS02 rna N/A N/A N/A N/A
    1058919 9t8n:d (2.22) BS01 rna N/A N/A N/A N/A
    1058920 9t8n:l (2.22) BS01 rna N/A N/A N/A N/A
    1058921 9t8n:l (2.22) BS02 rna N/A N/A N/A N/A
    1058922 9t8n:l (2.22) BS03 peptide N/A N/A N/A N/A
    1058923 9t8o:d (2.19) BS01 rna N/A N/A N/A N/A
    1058924 9t8o:l (2.19) BS01 rna N/A N/A N/A N/A
    1058925 9t8o:l (2.19) BS02 rna N/A N/A N/A N/A
    1058926 9t8p:d (2.22) BS01 rna N/A N/A N/A N/A
    1058927 9t8p:l (2.22) BS01 rna N/A N/A N/A N/A
    1058928 9t8p:l (2.22) BS02 rna N/A N/A N/A N/A
    1058929 9t8q:d (2.23) BS01 rna N/A N/A N/A N/A
    1058930 9t8q:l (2.23) BS01 rna N/A N/A N/A N/A
    1058931 9t8q:l (2.23) BS02 rna N/A N/A N/A N/A
    1058932 9t8r:d (2.22) BS01 rna N/A N/A N/A N/A
    1058933 9t8r:l (2.22) BS01 rna N/A N/A N/A N/A
    1058934 9t8r:l (2.22) BS02 rna N/A N/A N/A N/A
    1058935 9t8s:d (2.22) BS01 rna N/A N/A N/A N/A
    1058936 9t8s:l (2.22) BS01 rna N/A N/A N/A N/A
    1058937 9t8s:l (2.22) BS02 rna N/A N/A N/A N/A
    1058938 9t8t:d (2.23) BS01 rna N/A N/A N/A N/A
    1058939 9t8t:l (2.23) BS01 rna N/A N/A N/A N/A
    1058940 9t8t:l (2.23) BS02 rna N/A N/A N/A N/A
    1058941 9t8t:l (2.23) BS03 peptide N/A N/A N/A N/A
    1058942 9t99:A (2.18) BS01 rna N/A N/A G5EDI8 N/A
    1058943 9t99:A (2.18) BS02 rna N/A N/A G5EDI8 N/A
    1058944 9t99:A (2.18) BS03 ZN N/A N/A G5EDI8 N/A
    1058945 9t99:A (2.18) BS04 ADP N/A N/A G5EDI8 N/A
    1058946 9t9u:A (2.61) BS01 A1D6M N/A N/A Q69ZE8 N/A
    1058947 9t9u:A (2.61) BS02 YUV N/A N/A Q69ZE8 N/A
    1058948 9t9u:A (2.61) BS03 YUV N/A N/A Q69ZE8 N/A
    1058949 9t9u:B (2.61) BS01 YUV N/A N/A Q69ZE8 N/A
    1058950 9t9u:B (2.61) BS02 YUV N/A N/A Q69ZE8 N/A
    1058951 9t9u:B (2.61) BS03 A1D6M N/A N/A Q69ZE8 N/A
    1058952 9t9u:B (2.61) BS04 YUV N/A N/A Q69ZE8 N/A
    1058953 9t9u:C (2.61) BS01 YUV N/A N/A Q69ZE8 N/A
    1058954 9t9u:C (2.61) BS02 YUV N/A N/A Q69ZE8 N/A
    1058955 9t9u:C (2.61) BS03 YUV N/A N/A Q69ZE8 N/A
    1058956 9t9u:C (2.61) BS04 A1D6M N/A N/A Q69ZE8 N/A
    1058957 9t9u:C (2.61) BS05 YUV N/A N/A Q69ZE8 N/A
    1058958 9t9u:D (2.61) BS01 YUV N/A N/A Q69ZE8 N/A
    1058959 9t9u:D (2.61) BS02 YUV N/A N/A Q69ZE8 N/A
    1058960 9t9u:D (2.61) BS03 A1D6M N/A N/A Q69ZE8 N/A
    1058961 9ta5:A (2.1) BS01 peptide N/A GO:0005515 ... Q00169 41700428
    1058962 9taq:A (1.4) BS01 A1JUV N/A N/A N/A N/A
    1058963 9taq:A (1.4) BS02 A1JUW N/A N/A N/A N/A
    1058964 9taq:B (1.4) BS01 A1JUV N/A N/A N/A N/A
    1058965 9taq:B (1.4) BS02 A1JUW N/A N/A N/A N/A
    1058966 9taq:C (1.4) BS01 A1JUV N/A N/A N/A N/A
    1058967 9taq:C (1.4) BS02 A1JUW N/A N/A N/A N/A
    1058968 9taq:D (1.4) BS01 A1JUV N/A N/A N/A N/A
    1058969 9taq:D (1.4) BS02 A1JUW N/A N/A N/A N/A
    1058970 9tar:A (1.5) BS01 A1JUX N/A N/A N/A N/A
    1058971 9tar:A (1.5) BS02 A1JUW N/A N/A N/A N/A
    1058972 9tar:B (1.5) BS01 A1JUX N/A N/A N/A N/A
    1058973 9tar:B (1.5) BS02 A1JUW N/A N/A N/A N/A
    1058974 9tas:A (1.15) BS01 A1JUV N/A N/A N/A N/A
    1058975 9tas:A (1.15) BS02 A1JUW N/A N/A N/A N/A
    1058976 9tat:A (1.15) BS01 A1JUW N/A N/A N/A N/A
    1058977 9tat:B (1.15) BS01 A1JUW N/A N/A N/A N/A
    1058978 9tau:A (1.4) BS01 A1JUV N/A N/A N/A N/A
    1058979 9tav:A (1.55) BS01 A1JUV N/A N/A N/A N/A
    1058980 9tav:A (1.55) BS02 A1JUW N/A N/A N/A N/A
    1058981 9tb4:A (2.2) BS01 FPP N/A N/A N/A 41540682
    1058982 9tb4:A (2.2) BS02 SAH N/A N/A N/A 41540682
    1058983 9tb4:B (2.2) BS01 SAH N/A N/A N/A 41540682
    1058984 9tb4:C (2.2) BS01 SAH N/A N/A N/A 41540682
    1058985 9tb4:D (2.2) BS01 SAH N/A N/A N/A 41540682
    1058986 9tb4:E (2.2) BS01 SAH N/A N/A N/A 41540682
    1058987 9tb4:F (2.2) BS01 FPP N/A N/A N/A 41540682
    1058988 9tb4:F (2.2) BS02 SAH N/A N/A N/A 41540682
    1058989 9tb4:G (2.2) BS01 FPP N/A N/A N/A 41540682
    1058990 9tb4:G (2.2) BS02 SAH N/A N/A N/A 41540682
    1058991 9tb4:H (2.2) BS01 SAH N/A N/A N/A 41540682
    1058992 9tb4:I (2.2) BS01 SAH N/A N/A N/A 41540682
    1058993 9tb4:J (2.2) BS01 SAH N/A N/A N/A 41540682
    1058994 9tb4:K (2.2) BS01 SAH N/A N/A N/A 41540682
    1058995 9tb4:L (2.2) BS01 SAH N/A N/A N/A 41540682
    1058996 9tbd:A (2.1) BS01 RET N/A N/A N/A 41332690
    1058997 9tbd:B (2.1) BS01 RET N/A N/A N/A 41332690
    1058998 9tbd:C (2.1) BS01 RET N/A N/A N/A 41332690
    1058999 9tbd:D (2.1) BS01 RET N/A N/A N/A 41332690
    1059000 9tbd:E (2.1) BS01 RET N/A N/A N/A 41332690

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).