SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1059201 9tjx:E (3.0) BS01 CA N/A N/A P08709 N/A
    1059202 9tjx:E (3.0) BS02 CA N/A N/A P08709 N/A
    1059203 9tjx:E (3.0) BS03 CA N/A N/A P08709 N/A
    1059204 9tjx:E (3.0) BS04 CA N/A N/A P08709 N/A
    1059205 9tjx:E (3.0) BS05 MG N/A N/A P08709 N/A
    1059206 9tjx:E (3.0) BS06 MG N/A N/A P08709 N/A
    1059207 9tjx:F (3.0) BS01 CA N/A N/A P08709 N/A
    1059208 9tjx:F (3.0) BS02 CA N/A N/A P08709 N/A
    1059209 9tjx:F (3.0) BS03 CA N/A N/A P08709 N/A
    1059210 9tjx:F (3.0) BS04 CA N/A N/A P08709 N/A
    1059211 9tjx:F (3.0) BS05 MG N/A N/A P08709 N/A
    1059212 9tjx:L (3.0) BS01 CA N/A N/A P08709 N/A
    1059213 9tjx:L (3.0) BS02 CA N/A N/A P08709 N/A
    1059214 9tjx:L (3.0) BS03 CA N/A N/A P08709 N/A
    1059215 9tjx:L (3.0) BS04 CA N/A N/A P08709 N/A
    1059216 9tjx:L (3.0) BS05 MG N/A N/A P08709 N/A
    1059217 9tjx:L (3.0) BS06 MG N/A N/A P08709 N/A
    1059218 9tjx:R (3.0) BS01 CA N/A N/A P08709 N/A
    1059219 9tjx:R (3.0) BS02 CA N/A N/A P08709 N/A
    1059220 9tjx:R (3.0) BS03 CA N/A N/A P08709 N/A
    1059221 9tjx:R (3.0) BS04 CA N/A N/A P08709 N/A
    1059222 9tjx:R (3.0) BS05 MG N/A N/A P08709 N/A
    1059223 9tjx:R (3.0) BS06 MG N/A N/A P08709 N/A
    1059224 9tkv:A (1.488) BS01 rna N/A N/A D3TI84 N/A
    1059225 9tkv:A (1.488) BS02 ZN N/A N/A D3TI84 N/A
    1059226 9tkv:A (1.488) BS03 GTP N/A N/A D3TI84 N/A
    1059227 9tl1:A (1.704) BS01 rna N/A N/A D3TI84 N/A
    1059228 9tl1:A (1.704) BS02 ZN N/A N/A D3TI84 N/A
    1059229 9tl1:A (1.704) BS03 ADP N/A N/A D3TI84 N/A
    1059230 9tl1:A (1.704) BS04 ADP N/A N/A D3TI84 N/A
    1059231 9tm6:A (1.982) BS01 rna N/A N/A D3TI84 N/A
    1059232 9tm6:A (1.982) BS02 ZN N/A N/A D3TI84 N/A
    1059233 9tm6:A (1.982) BS03 ADP N/A N/A D3TI84 N/A
    1059234 9tm6:A (1.982) BS04 GTP N/A N/A D3TI84 N/A
    1059235 9tme:A (1.813) BS01 A1JWS N/A GO:0004802 ... C6KSV3 N/A
    1059236 9tme:A (1.813) BS02 A1JWS N/A GO:0004802 ... C6KSV3 N/A
    1059237 9tme:B (1.813) BS01 A1JWS N/A GO:0004802 ... C6KSV3 N/A
    1059238 9tme:B (1.813) BS02 A1JWS N/A GO:0004802 ... C6KSV3 N/A
    1059239 9tme:C (1.813) BS01 A1JWS N/A GO:0004802 ... C6KSV3 N/A
    1059240 9tme:C (1.813) BS02 A1JWS N/A GO:0004802 ... C6KSV3 N/A
    1059241 9tme:D (1.813) BS01 A1JWS N/A GO:0004802 ... C6KSV3 N/A
    1059242 9tme:D (1.813) BS02 A1JWS N/A GO:0004802 ... C6KSV3 N/A
    1059243 9tmp:A (2.65) BS01 HEM N/A N/A P0ABE7 N/A
    1059244 9toy:A (2.1) BS01 dna N/A N/A Q15306 34196610
    1059245 9toy:A (2.1) BS02 dna N/A N/A Q15306 34196610
    1059246 9toy:B (2.1) BS01 dna N/A N/A Q15306 34196610
    1059247 9toy:B (2.1) BS02 dna N/A N/A Q15306 34196610
    1059248 9toy:D (2.1) BS01 dna N/A N/A Q15306 34196610
    1059249 9toy:D (2.1) BS02 dna N/A N/A Q15306 34196610
    1059250 9toy:F (2.1) BS01 dna N/A N/A Q15306 34196610
    1059251 9toy:F (2.1) BS02 dna N/A N/A Q15306 34196610
    1059252 9tpf:A (1.8) BS01 ZN N/A N/A N/A N/A
    1059253 9tpg:A (2.48) BS01 A1H2Z N/A N/A A0A140DLX4 41667483
    1059254 9tpg:A (2.48) BS02 A1H2Z N/A N/A A0A140DLX4 41667483
    1059255 9tqc:B (2.48) BS01 BTI N/A N/A N/A 41509382
    1059256 9tqc:G (2.48) BS01 BTI N/A N/A N/A 41509382
    1059257 9tqg:D (2.68) BS01 BTI N/A GO:0004485 ... Q5ZUH1 41509382
    1059258 9tqg:E (2.68) BS01 BTI N/A GO:0004485 ... Q5ZUH1 41509382
    1059259 9tqg:F (2.68) BS01 BTI N/A GO:0004485 ... Q5ZUH1 41509382
    1059260 9tro:A (1.55) BS01 CA N/A N/A N/A N/A
    1059261 9tro:A (1.55) BS02 CA N/A N/A N/A N/A
    1059262 9tro:A (1.55) BS03 CA N/A N/A N/A N/A
    1059263 9tro:A (1.55) BS04 CA N/A N/A N/A N/A
    1059264 9tro:A (1.55) BS05 CA N/A N/A N/A N/A
    1059265 9tro:A (1.55) BS06 CA N/A N/A N/A N/A
    1059266 9tro:L (1.55) BS01 CA N/A N/A N/A N/A
    1059267 9tro:L (1.55) BS02 CA N/A N/A N/A N/A
    1059268 9tro:L (1.55) BS03 CA N/A N/A N/A N/A
    1059269 9tro:L (1.55) BS04 CA N/A N/A N/A N/A
    1059270 9tro:L (1.55) BS05 CA N/A N/A N/A N/A
    1059271 9tu0:A (2.17) BS01 peptide N/A GO:0000165 ... P27361 41648251
    1059272 9tvu:0 (2.52) BS01 rna N/A N/A N/A 41727112
    1059273 9tvu:0 (2.52) BS02 rna N/A N/A N/A 41727112
    1059274 9tvu:6 (2.52) BS01 rna N/A N/A N/A 41727112
    1059275 9tvu:7 (2.52) BS01 rna N/A N/A N/A 41727112
    1059276 9tvu:7 (2.52) BS02 rna N/A N/A N/A 41727112
    1059277 9tvu:8 (2.52) BS01 rna N/A N/A N/A 41727112
    1059278 9tvu:8 (2.52) BS02 rna N/A N/A N/A 41727112
    1059279 9tvu:9 (2.52) BS01 rna N/A N/A N/A 41727112
    1059280 9tvu:B (2.52) BS01 rna N/A N/A N/A 41727112
    1059281 9tvu:C (2.52) BS01 rna N/A N/A N/A 41727112
    1059282 9tvu:D (2.52) BS01 rna N/A N/A N/A 41727112
    1059283 9tvu:D (2.52) BS02 rna N/A N/A N/A 41727112
    1059284 9tvu:E (2.52) BS01 rna N/A N/A N/A 41727112
    1059285 9tvu:E (2.52) BS02 rna N/A N/A N/A 41727112
    1059286 9tvu:F (2.52) BS01 rna N/A N/A N/A 41727112
    1059287 9tvu:G (2.52) BS01 rna N/A N/A N/A 41727112
    1059288 9tvu:G (2.52) BS02 rna N/A N/A N/A 41727112
    1059289 9tvu:H (2.52) BS01 rna N/A N/A N/A 41727112
    1059290 9tvu:I (2.52) BS01 rna N/A N/A N/A 41727112
    1059291 9tvu:J (2.52) BS01 rna N/A N/A N/A 41727112
    1059292 9tvu:K (2.52) BS01 rna N/A N/A N/A 41727112
    1059293 9tvu:K (2.52) BS02 rna N/A N/A N/A 41727112
    1059294 9tvu:L (2.52) BS01 rna N/A N/A N/A 41727112
    1059295 9tvu:L (2.52) BS02 rna N/A N/A N/A 41727112
    1059296 9tvu:L (2.52) BS03 MG N/A N/A N/A 41727112
    1059297 9tvu:M (2.52) BS01 rna N/A N/A N/A 41727112
    1059298 9tvu:M (2.52) BS02 rna N/A N/A N/A 41727112
    1059299 9tvu:N (2.52) BS01 rna N/A N/A N/A 41727112
    1059300 9tvu:O (2.52) BS01 rna N/A N/A N/A 41727112
    1059301 9tvu:O (2.52) BS02 rna N/A N/A N/A 41727112
    1059302 9tvu:P (2.52) BS01 rna N/A N/A N/A 41727112
    1059303 9tvu:P (2.52) BS02 rna N/A N/A N/A 41727112
    1059304 9tvu:Q (2.52) BS01 rna N/A N/A N/A 41727112
    1059305 9tvu:Q (2.52) BS02 rna N/A N/A N/A 41727112
    1059306 9tvu:Q (2.52) BS03 MG N/A N/A N/A 41727112
    1059307 9tvu:R (2.52) BS01 rna N/A N/A N/A 41727112
    1059308 9tvu:S (2.52) BS01 rna N/A N/A N/A 41727112
    1059309 9tvu:S (2.52) BS02 rna N/A N/A N/A 41727112
    1059310 9tvu:T (2.52) BS01 rna N/A N/A N/A 41727112
    1059311 9tvu:T (2.52) BS02 rna N/A N/A N/A 41727112
    1059312 9tvu:U (2.52) BS01 rna N/A N/A N/A 41727112
    1059313 9tvu:U (2.52) BS02 rna N/A N/A N/A 41727112
    1059314 9tvu:U (2.52) BS03 rna N/A N/A N/A 41727112
    1059315 9tvu:V (2.52) BS01 rna N/A N/A N/A 41727112
    1059316 9tvu:W (2.52) BS01 rna N/A N/A N/A 41727112
    1059317 9tvu:W (2.52) BS02 rna N/A N/A N/A 41727112
    1059318 9tvu:X (2.52) BS01 rna N/A N/A N/A 41727112
    1059319 9tvu:Y (2.52) BS01 rna N/A N/A N/A 41727112
    1059320 9tvu:Y (2.52) BS02 rna N/A N/A N/A 41727112
    1059321 9tvu:Z (2.52) BS01 rna N/A N/A N/A 41727112
    1059322 9tvu:Z (2.52) BS02 rna N/A N/A N/A 41727112
    1059323 9tvu:b (2.52) BS01 rna N/A N/A N/A 41727112
    1059324 9tvu:c (2.52) BS01 rna N/A N/A N/A 41727112
    1059325 9tvu:d (2.52) BS01 rna N/A N/A N/A 41727112
    1059326 9tvu:e (2.52) BS01 rna N/A N/A N/A 41727112
    1059327 9tvu:f (2.52) BS01 rna N/A N/A N/A 41727112
    1059328 9tvu:g (2.52) BS01 rna N/A N/A N/A 41727112
    1059329 9tvu:h (2.52) BS01 rna N/A N/A N/A 41727112
    1059330 9tvu:i (2.52) BS01 rna N/A N/A N/A 41727112
    1059331 9tvu:j (2.52) BS01 rna N/A N/A N/A 41727112
    1059332 9tvu:k (2.52) BS01 rna N/A N/A N/A 41727112
    1059333 9tvu:l (2.52) BS01 rna N/A N/A N/A 41727112
    1059334 9tvu:m (2.52) BS01 rna N/A N/A N/A 41727112
    1059335 9tvu:m (2.52) BS02 rna N/A N/A N/A 41727112
    1059336 9tvu:n (2.52) BS01 rna N/A N/A N/A 41727112
    1059337 9tvu:o (2.52) BS01 rna N/A N/A N/A 41727112
    1059338 9tvu:o (2.52) BS02 rna N/A N/A N/A 41727112
    1059339 9tvu:p (2.52) BS01 rna N/A N/A N/A 41727112
    1059340 9tvu:q (2.52) BS01 rna N/A N/A N/A 41727112
    1059341 9tvu:r (2.52) BS01 rna N/A N/A N/A 41727112
    1059342 9tvu:s (2.52) BS01 rna N/A N/A N/A 41727112
    1059343 9tvu:t (2.52) BS01 rna N/A N/A N/A 41727112
    1059344 9tvu:u (2.52) BS01 rna N/A N/A N/A 41727112
    1059345 9tvu:w (2.52) BS01 rna N/A N/A N/A 41727112
    1059346 9tvu:x (2.52) BS01 rna N/A N/A N/A 41727112
    1059347 9tw9:A (1.65) BS01 FE N/A N/A N/A 41684149
    1059348 9tw9:B (1.65) BS01 FE N/A N/A N/A 41684149
    1059349 9twa:A (1.4) BS01 FE N/A N/A N/A 41684149
    1059350 9twa:B (1.4) BS01 FE N/A N/A N/A 41684149
    1059351 9twc:A (2.0) BS01 FE N/A N/A N/A 41684149
    1059352 9twc:B (2.0) BS01 FE N/A N/A N/A 41684149
    1059353 9twc:C (2.0) BS01 FE N/A N/A N/A 41684149
    1059354 9twc:D (2.0) BS01 FE N/A N/A N/A 41684149
    1059355 9twc:E (2.0) BS01 FE N/A N/A N/A 41684149
    1059356 9twc:G (2.0) BS01 FE N/A N/A N/A 41684149
    1059357 9tyg:A (2.9) BS01 ADP N/A GO:0000165 ... A0A125YG37
    Q02750
    41648251
    1059358 9tyg:A (2.9) BS02 MG N/A GO:0000165 ... A0A125YG37
    Q02750
    41648251
    1059359 9tyg:B (2.9) BS01 ADP N/A GO:0000165 ... P28482 41648251
    1059360 9tyh:A (3.4) BS01 ADP N/A GO:0000165 ... A0A125YG37
    Q02750
    41648251
    1059361 9tyh:B (3.4) BS01 ADP N/A GO:0000165 ... P28482 41648251
    1059362 9u19:C (1.18) BS01 dna N/A N/A N/A N/A
    1059363 9u19:C (1.18) BS02 dna N/A N/A N/A N/A
    1059364 9u19:F (1.18) BS01 dna N/A N/A N/A N/A
    1059365 9u19:F (1.18) BS02 dna N/A N/A N/A N/A
    1059366 9u2s:A (3.2) BS01 dna N/A N/A Q9T221 N/A
    1059367 9u2s:A (3.2) BS02 dna N/A N/A Q9T221 N/A
    1059368 9u2s:A (3.2) BS03 ZN N/A N/A Q9T221 N/A
    1059369 9u2s:B (3.2) BS01 dna N/A N/A Q9T221 N/A
    1059370 9u2s:B (3.2) BS02 dna N/A N/A Q9T221 N/A
    1059371 9u2s:B (3.2) BS03 ZN N/A N/A Q9T221 N/A
    1059372 9u2t:A (3.26) BS01 dna N/A N/A Q9T221 N/A
    1059373 9u2t:A (3.26) BS02 dna N/A N/A Q9T221 N/A
    1059374 9u2t:A (3.26) BS03 ZN N/A N/A Q9T221 N/A
    1059375 9u2t:B (3.26) BS01 dna N/A N/A Q9T221 N/A
    1059376 9u2t:B (3.26) BS02 dna N/A N/A Q9T221 N/A
    1059377 9u2t:B (3.26) BS03 ZN N/A N/A Q9T221 N/A
    1059378 9u32:A (2.51) BS01 GLU N/A N/A N/A 41731698
    1059379 9u32:A (2.51) BS02 Y01 N/A N/A N/A 41731698
    1059380 9u32:B (2.51) BS01 GLU N/A N/A N/A 41731698
    1059381 9u32:B (2.51) BS02 Y01 N/A N/A N/A 41731698
    1059382 9u39:A (2.218) BS01 SER N/A N/A D5SUT9 N/A
    1059383 9u39:A (2.218) BS02 SER N/A N/A D5SUT9 N/A
    1059384 9u39:B (2.218) BS01 SER N/A N/A D5SUT9 N/A
    1059385 9u39:B (2.218) BS02 SER N/A N/A D5SUT9 N/A
    1059386 9u39:C (2.218) BS01 SER N/A N/A D5SUT9 N/A
    1059387 9u39:C (2.218) BS02 SER N/A N/A D5SUT9 N/A
    1059388 9u3a:A (2.98) BS01 AMP N/A N/A N/A N/A
    1059389 9u3a:A (2.98) BS02 AMP N/A N/A N/A N/A
    1059390 9u3a:B (2.98) BS01 AMP N/A N/A N/A N/A
    1059391 9u3a:B (2.98) BS02 AMP N/A N/A N/A N/A
    1059392 9u3a:D (2.98) BS01 AMP N/A N/A N/A N/A
    1059393 9u3a:D (2.98) BS02 AMP N/A N/A N/A N/A
    1059394 9u3a:E (2.98) BS01 AMP N/A N/A N/A N/A
    1059395 9u3a:E (2.98) BS02 AMP N/A N/A N/A N/A
    1059396 9u3b:A (1.3) BS01 FAD N/A GO:0005737 ... P40859 40932061
    1059397 9u3b:A (1.3) BS02 PRS N/A GO:0005737 ... P40859 40932061
    1059398 9u3b:A (1.3) BS03 PRS N/A GO:0005737 ... P40859 40932061
    1059399 9u3b:B (1.3) BS01 FAD N/A GO:0005737 ... P40859 40932061
    1059400 9u3b:B (1.3) BS02 PRS N/A GO:0005737 ... P40859 40932061

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).