SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1059401 9u3b:B (1.3) BS03 PRS N/A GO:0005737 ... P40859 40932061
    1059402 9u3c:A (1.54) BS01 FAD N/A GO:0005737 ... P40859 40932061
    1059403 9u3c:A (1.54) BS02 PRO N/A GO:0005737 ... P40859 40932061
    1059404 9u3c:A (1.54) BS03 PRO N/A GO:0005737 ... P40859 40932061
    1059405 9u3c:B (1.54) BS01 FAD N/A GO:0005737 ... P40859 40932061
    1059406 9u3c:B (1.54) BS02 PRO N/A GO:0005737 ... P40859 40932061
    1059407 9u3c:B (1.54) BS03 PRO N/A GO:0005737 ... P40859 40932061
    1059408 9u3d:A (1.35) BS01 FAD N/A GO:0005737 ... P40859 40932061
    1059409 9u3d:A (1.35) BS02 DPR N/A GO:0005737 ... P40859 40932061
    1059410 9u3d:B (1.35) BS01 FAD N/A GO:0005737 ... P40859 40932061
    1059411 9u3d:B (1.35) BS02 DPR N/A GO:0005737 ... P40859 40932061
    1059412 9u3e:A (1.35) BS01 FAD N/A GO:0005737 ... P40859 40932061
    1059413 9u3e:B (1.35) BS01 FAD N/A GO:0005737 ... P40859 40932061
    1059414 9u3f:A (1.45) BS01 FAD N/A GO:0005737 ... P40859 40932061
    1059415 9u3f:B (1.45) BS01 FAD N/A GO:0005737 ... P40859 40932061
    1059416 9u3h:A (2.181) BS01 A1ENY N/A N/A A0A866WQ05 N/A
    1059417 9u3h:B (2.181) BS01 A1ENY N/A N/A A0A866WQ05 N/A
    1059418 9u3h:C (2.181) BS01 A1ENY N/A N/A A0A866WQ05 N/A
    1059419 9u3h:D (2.181) BS01 A1ENY N/A N/A A0A866WQ05 N/A
    1059420 9u3k:D (3.32) BS01 AMP N/A N/A N/A N/A
    1059421 9u3k:D (3.32) BS02 AMP N/A N/A N/A N/A
    1059422 9u3k:E (3.32) BS01 AMP N/A N/A N/A N/A
    1059423 9u3k:E (3.32) BS02 AMP N/A N/A N/A N/A
    1059424 9u3l:A (2.91) BS01 ADP N/A N/A P35998 N/A
    1059425 9u3l:B (2.91) BS01 peptide N/A N/A P62191 N/A
    1059426 9u3l:B (2.91) BS02 ATP N/A N/A P62191 N/A
    1059427 9u3l:C (2.91) BS01 peptide N/A N/A P62195 N/A
    1059428 9u3l:C (2.91) BS02 ATP N/A N/A P62195 N/A
    1059429 9u3l:C (2.91) BS03 ATP N/A N/A P62195 N/A
    1059430 9u3l:D (2.91) BS01 ATP N/A N/A P43686 N/A
    1059431 9u3l:D (2.91) BS02 ATP N/A N/A P43686 N/A
    1059432 9u3l:E (2.91) BS01 ADP N/A N/A A0A087X2I1 N/A
    1059433 9u3l:F (2.91) BS01 ADP N/A N/A P17980 N/A
    1059434 9u3l:N (2.91) BS01 LDZ N/A N/A P28072 N/A
    1059435 9u3l:O (2.91) BS01 LDZ N/A N/A Q99436 N/A
    1059436 9u3l:R (2.91) BS01 LDZ N/A N/A P28074 N/A
    1059437 9u3l:c (2.91) BS01 ZN N/A N/A O00487 N/A
    1059438 9u3l:n (2.91) BS01 LDZ N/A N/A P28072 N/A
    1059439 9u3l:o (2.91) BS01 LDZ N/A N/A Q99436 N/A
    1059440 9u3l:p (2.91) BS01 LDZ N/A N/A P49720 N/A
    1059441 9u3l:r (2.91) BS01 LDZ N/A N/A P28074 N/A
    1059442 9u3n:A (3.25) BS01 A1ENT N/A GO:0004672 ... P21802 N/A
    1059443 9u3n:B (3.25) BS01 A1ENT N/A GO:0004672 ... P21802 N/A
    1059444 9u3p:B (2.65) BS01 GSP N/A GO:0001678 ... P63092 40466787
    1059445 9u3p:B (2.65) BS02 MG N/A GO:0001678 ... P63092 40466787
    1059446 9u3w:A (2.91) BS01 RIB N/A N/A N/A 41110570
    1059447 9u3w:B (2.91) BS01 RIB N/A N/A N/A 41110570
    1059448 9u42:A (1.55) BS01 ZN N/A N/A A0A1V2UZ47 40650421
    1059449 9u46:A (1.992) BS01 MTA N/A GO:0002128 ... Q9HJN6 40664129
    1059450 9u47:A (3.4) BS01 rna N/A GO:0000398 ... O42662 40841561
    1059451 9u48:A (2.99) BS01 rna N/A GO:0000398 ... O42662 40841561
    1059452 9u48:A (2.99) BS02 SAM N/A GO:0000398 ... O42662 40841561
    1059453 9u49:A (1.9) BS01 rna N/A N/A N/A 41569151
    1059454 9u49:B (1.9) BS01 rna N/A N/A N/A 41569151
    1059455 9u4e:A (2.78) BS01 A1EN6 N/A N/A P02741 N/A
    1059456 9u4e:A (2.78) BS02 CA N/A N/A P02741 N/A
    1059457 9u4e:A (2.78) BS03 CA N/A N/A P02741 N/A
    1059458 9u4e:B (2.78) BS01 A1EN6 N/A N/A P02741 N/A
    1059459 9u4e:B (2.78) BS02 CA N/A N/A P02741 N/A
    1059460 9u4e:B (2.78) BS03 CA N/A N/A P02741 N/A
    1059461 9u4e:C (2.78) BS01 A1EN6 N/A N/A P02741 N/A
    1059462 9u4e:C (2.78) BS02 CA N/A N/A P02741 N/A
    1059463 9u4e:C (2.78) BS03 CA N/A N/A P02741 N/A
    1059464 9u4e:D (2.78) BS01 A1EN6 N/A N/A P02741 N/A
    1059465 9u4e:D (2.78) BS02 CA N/A N/A P02741 N/A
    1059466 9u4e:D (2.78) BS03 CA N/A N/A P02741 N/A
    1059467 9u4e:E (2.78) BS01 A1EN6 N/A N/A P02741 N/A
    1059468 9u4e:E (2.78) BS02 CA N/A N/A P02741 N/A
    1059469 9u4e:E (2.78) BS03 CA N/A N/A P02741 N/A
    1059470 9u4i:A (1.852) BS01 A1EN8 N/A N/A Q6XEC0 N/A
    1059471 9u4i:B (1.852) BS01 A1EN8 N/A N/A Q6XEC0 N/A
    1059472 9u4i:C (1.852) BS01 A1EN8 N/A N/A Q6XEC0 N/A
    1059473 9u4i:D (1.852) BS01 A1EN8 N/A N/A Q6XEC0 N/A
    1059474 9u4k:A (2.178) BS01 A1EN7 N/A N/A Q6XEC0 N/A
    1059475 9u4k:B (2.178) BS01 A1EN7 N/A N/A Q6XEC0 N/A
    1059476 9u4k:C (2.178) BS01 A1EN7 N/A N/A Q6XEC0 N/A
    1059477 9u4k:D (2.178) BS01 A1EN7 N/A N/A Q6XEC0 N/A
    1059478 9u4k:E (2.178) BS01 A1EN7 N/A N/A Q6XEC0 N/A
    1059479 9u4k:F (2.178) BS01 A1EN7 N/A N/A Q6XEC0 N/A
    1059480 9u4k:G (2.178) BS01 A1EN7 N/A N/A Q6XEC0 N/A
    1059481 9u4k:H (2.178) BS01 A1EN7 N/A N/A Q6XEC0 N/A
    1059482 9u4m:A (4.14) BS01 ADP N/A N/A P35998 N/A
    1059483 9u4m:B (4.14) BS01 ADP N/A N/A P62191 N/A
    1059484 9u4m:C (4.14) BS01 ATP N/A N/A P62195 N/A
    1059485 9u4m:C (4.14) BS02 MG N/A N/A P62195 N/A
    1059486 9u4m:D (4.14) BS01 peptide N/A N/A P43686 N/A
    1059487 9u4m:D (4.14) BS02 ATP N/A N/A P43686 N/A
    1059488 9u4m:D (4.14) BS03 ATP N/A N/A P43686 N/A
    1059489 9u4m:E (4.14) BS01 peptide N/A N/A A0A087X2I1 N/A
    1059490 9u4m:E (4.14) BS02 ATP N/A N/A A0A087X2I1 N/A
    1059491 9u4m:E (4.14) BS03 ATP N/A N/A A0A087X2I1 N/A
    1059492 9u4m:F (4.14) BS01 ATP N/A N/A P17980 N/A
    1059493 9u4m:F (4.14) BS02 ADP N/A N/A P17980 N/A
    1059494 9u4m:c (4.14) BS01 ZN N/A N/A O00487 N/A
    1059495 9u4s:A (2.25) BS01 A1EN5 N/A GO:0046488 ... Q8TBX8 40992727
    1059496 9u4s:B (2.25) BS01 A1EN5 N/A GO:0046488 ... Q8TBX8 40992727
    1059497 9u4w:R (3.18) BS01 peptide N/A GO:0004930 ... P49922 40523184
    1059498 9u4x:A (2.7) BS01 ZN N/A N/A N/A N/A
    1059499 9u4x:A (2.7) BS02 ZN N/A N/A N/A N/A
    1059500 9u4x:B (2.7) BS01 ZN N/A N/A N/A N/A
    1059501 9u4x:B (2.7) BS02 ZN N/A N/A N/A N/A
    1059502 9u4x:C (2.7) BS01 ZN N/A N/A N/A N/A
    1059503 9u4x:C (2.7) BS02 ZN N/A N/A N/A N/A
    1059504 9u4x:D (2.7) BS01 ZN N/A N/A N/A N/A
    1059505 9u4x:D (2.7) BS02 ZN N/A N/A N/A N/A
    1059506 9u4x:E (2.7) BS01 ZN N/A N/A N/A N/A
    1059507 9u4x:E (2.7) BS02 ZN N/A N/A N/A N/A
    1059508 9u4x:F (2.7) BS01 ZN N/A N/A N/A N/A
    1059509 9u4x:F (2.7) BS02 ZN N/A N/A N/A N/A
    1059510 9u4x:G (2.7) BS01 ZN N/A N/A N/A N/A
    1059511 9u4x:G (2.7) BS02 ZN N/A N/A N/A N/A
    1059512 9u4x:H (2.7) BS01 ZN N/A N/A N/A N/A
    1059513 9u4x:H (2.7) BS02 ZN N/A N/A N/A N/A
    1059514 9u4y:R (2.67) BS01 peptide N/A GO:0004930 ... P07550 40523184
    1059515 9u50:A (1.87) BS01 A1EN3 N/A GO:0003924 ... P01116 40780213
    1059516 9u50:A (1.87) BS02 GDP N/A GO:0003924 ... P01116 40780213
    1059517 9u50:B (1.87) BS01 A1EN3 N/A GO:0003924 ... P01116 40780213
    1059518 9u50:B (1.87) BS02 GDP N/A GO:0003924 ... P01116 40780213
    1059519 9u50:C (1.87) BS01 A1EN3 N/A GO:0003924 ... P01116 40780213
    1059520 9u50:C (1.87) BS02 GDP N/A GO:0003924 ... P01116 40780213
    1059521 9u53:A (1.97) BS01 HEM N/A GO:0004497 ... A0A4D4LTT1 N/A
    1059522 9u54:A (2.101) BS01 CIT N/A GO:0003824 ... A4W515 41069273
    1059523 9u54:B (2.101) BS01 CIT N/A GO:0003824 ... A4W515 41069273
    1059524 9u54:C (2.101) BS01 CIT N/A GO:0003824 ... A4W515 41069273
    1059525 9u54:D (2.101) BS01 CIT N/A GO:0003824 ... A4W515 41069273
    1059526 9u54:E (2.101) BS01 CIT N/A GO:0003824 ... A4W515 41069273
    1059527 9u54:F (2.101) BS01 CIT N/A GO:0003824 ... A4W515 41069273
    1059528 9u55:A (3.17) BS01 RTO N/A GO:0005452 ... Q4U2R8 N/A
    1059529 9u56:A (2.91) BS01 CLR N/A N/A Q42093 N/A
    1059530 9u56:A (2.91) BS02 CLR N/A N/A Q42093 N/A
    1059531 9u56:A (2.91) BS03 CLR N/A N/A Q42093 N/A
    1059532 9u56:A (2.91) BS04 CLR N/A N/A Q42093 N/A
    1059533 9u56:A (2.91) BS05 CLR N/A N/A Q42093 N/A
    1059534 9u57:A (3.42) BS01 CLR N/A N/A Q42093 N/A
    1059535 9u57:A (3.42) BS02 CLR N/A N/A Q42093 N/A
    1059536 9u57:A (3.42) BS03 CLR N/A N/A Q42093 N/A
    1059537 9u57:B (3.42) BS01 CLR N/A N/A Q42093 N/A
    1059538 9u57:B (3.42) BS02 CLR N/A N/A Q42093 N/A
    1059539 9u57:B (3.42) BS03 CLR N/A N/A Q42093 N/A
    1059540 9u58:A (3.36) BS01 ATA N/A N/A Q42093 N/A
    1059541 9u58:A (3.36) BS02 CLR N/A N/A Q42093 N/A
    1059542 9u58:A (3.36) BS03 CLR N/A N/A Q42093 N/A
    1059543 9u58:A (3.36) BS04 CLR N/A N/A Q42093 N/A
    1059544 9u5a:A (2.98) BS01 ZWY N/A GO:0005452 ... Q9NSA0 N/A
    1059545 9u5b:A (1.25) BS01 ZN N/A GO:0004064 ... P00918 40441537
    1059546 9u5b:A (1.25) BS02 BCT N/A GO:0004064 ... P00918 40441537
    1059547 9u5c:A (2.25) BS01 CA N/A GO:0005227 ... Q13507 41125595
    1059548 9u5c:A (2.25) BS02 CA N/A GO:0005227 ... Q13507 41125595
    1059549 9u5c:A (2.25) BS03 ZN N/A GO:0005227 ... Q13507 41125595
    1059550 9u5c:A (2.25) BS04 A1L5I N/A GO:0005227 ... Q13507 41125595
    1059551 9u5c:A (2.25) BS05 A1L5I N/A GO:0005227 ... Q13507 41125595
    1059552 9u5c:C (2.25) BS01 A1L5I N/A GO:0005227 ... Q13507 41125595
    1059553 9u5c:C (2.25) BS02 CA N/A GO:0005227 ... Q13507 41125595
    1059554 9u5c:C (2.25) BS03 CA N/A GO:0005227 ... Q13507 41125595
    1059555 9u5c:C (2.25) BS04 ZN N/A GO:0005227 ... Q13507 41125595
    1059556 9u5c:C (2.25) BS05 A1L5I N/A GO:0005227 ... Q13507 41125595
    1059557 9u5c:E (2.25) BS01 A1L5I N/A GO:0005227 ... Q13507 41125595
    1059558 9u5c:E (2.25) BS02 CA N/A GO:0005227 ... Q13507 41125595
    1059559 9u5c:E (2.25) BS03 CA N/A GO:0005227 ... Q13507 41125595
    1059560 9u5c:E (2.25) BS04 ZN N/A GO:0005227 ... Q13507 41125595
    1059561 9u5c:E (2.25) BS05 A1L5I N/A GO:0005227 ... Q13507 41125595
    1059562 9u5c:G (2.25) BS01 A1L5I N/A GO:0005227 ... Q13507 41125595
    1059563 9u5c:G (2.25) BS02 CA N/A GO:0005227 ... Q13507 41125595
    1059564 9u5c:G (2.25) BS03 CA N/A GO:0005227 ... Q13507 41125595
    1059565 9u5c:G (2.25) BS04 ZN N/A GO:0005227 ... Q13507 41125595
    1059566 9u5c:G (2.25) BS05 A1L5I N/A GO:0005227 ... Q13507 41125595
    1059567 9u5g:B (2.66) BS01 FMN N/A GO:0005886 ... A5F5X0 40501732
    1059568 9u5g:B (2.66) BS02 RBF N/A GO:0005886 ... A5F5X0 40501732
    1059569 9u5g:C (2.66) BS01 CA N/A GO:0005886 ... A5F5Y7 40501732
    1059570 9u5g:D (2.66) BS01 FES N/A GO:0005886 ... A5F5Y6 40501732
    1059571 9u5g:E (2.66) BS01 FES N/A GO:0005886 ... A5F5Y5 40501732
    1059572 9u5g:F (2.66) BS01 FES N/A GO:0005886 ... A5F5Y4 40501732
    1059573 9u5g:F (2.66) BS02 FAD N/A GO:0005886 ... A5F5Y4 40501732
    1059574 9u5h:A (1.67) BS01 MTA N/A N/A Q9YAQ8 N/A
    1059575 9u5i:A (1.64) BS01 MTA N/A N/A Q9YAQ8 N/A
    1059576 9u5n:A (1.27) BS01 FMN N/A N/A B8GAY9 N/A
    1059577 9u5n:B (1.27) BS01 FMN N/A N/A B8GAY9 N/A
    1059578 9u5p:A (2.96) BS01 rna N/A N/A P03303 N/A
    1059579 9u5p:O (2.96) BS01 rna N/A N/A P03303 N/A
    1059580 9u5q:A (3.35) BS01 rna N/A N/A P03303 N/A
    1059581 9u5r:O (3.59) BS01 rna N/A N/A P03303 N/A
    1059582 9u5t:A (1.8) BS01 A1EN3 N/A GO:0003924 ... P01116 40780213
    1059583 9u5t:A (1.8) BS02 GDP N/A GO:0003924 ... P01116 40780213
    1059584 9u5u:A (3.12) BS01 dna N/A GO:0000786 ... Q71DI3 N/A
    1059585 9u5u:A (3.12) BS02 dna N/A GO:0000786 ... Q71DI3 N/A
    1059586 9u5u:B (3.12) BS01 dna N/A GO:0000781 ... P62805 N/A
    1059587 9u5u:B (3.12) BS02 dna N/A GO:0000781 ... P62805 N/A
    1059588 9u5u:C (3.12) BS01 dna N/A GO:0000786 ... P04908 N/A
    1059589 9u5u:C (3.12) BS02 dna N/A GO:0000786 ... P04908 N/A
    1059590 9u5u:D (3.12) BS01 dna N/A GO:0000786 ... O60814 N/A
    1059591 9u5u:D (3.12) BS02 dna N/A GO:0000786 ... O60814 N/A
    1059592 9u5u:E (3.12) BS01 dna N/A GO:0000786 ... Q71DI3 N/A
    1059593 9u5u:E (3.12) BS02 dna N/A GO:0000786 ... Q71DI3 N/A
    1059594 9u5u:F (3.12) BS01 dna N/A GO:0000781 ... P62805 N/A
    1059595 9u5u:F (3.12) BS02 dna N/A GO:0000781 ... P62805 N/A
    1059596 9u5u:G (3.12) BS01 dna N/A GO:0000786 ... P04908 N/A
    1059597 9u5u:G (3.12) BS02 dna N/A GO:0000786 ... P04908 N/A
    1059598 9u5u:H (3.12) BS01 dna N/A GO:0000786 ... O60814 N/A
    1059599 9u5u:H (3.12) BS02 dna N/A GO:0000786 ... O60814 N/A
    1059600 9u5u:L (3.12) BS01 dna N/A GO:0000278 ... Q92560 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).