SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
  • Sort results by
    << < 5289 5290 5291 5292 5293 5294 5295 5296 5297 5298 5299 5300 5301 5302 5303 5304 5305 5306 5307 5308 5309 > >>
    Go to page

    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1059601 9u5u:L (3.12) BS02 dna N/A GO:0000278 ... Q92560 N/A
    1059602 9u5v:A (1.663) BS01 LUM N/A N/A B8GAY9 N/A
    1059603 9u5v:B (1.663) BS01 LUM N/A N/A B8GAY9 N/A
    1059604 9u5y:A (2.3) BS01 HEM N/A N/A N/A N/A
    1059605 9u64:A (2.266) BS01 A1EN4 N/A N/A Q16769 N/A
    1059606 9u64:A (2.266) BS02 ZN N/A N/A Q16769 N/A
    1059607 9u64:A (2.266) BS03 MG N/A N/A Q16769 N/A
    1059608 9u64:A (2.266) BS04 MG N/A N/A Q16769 N/A
    1059609 9u6a:A (1.92) BS01 GTP N/A GO:0000226 ... Q2XVP4 40578283
    1059610 9u6a:A (1.92) BS02 A1L8X N/A GO:0000226 ... Q2XVP4 40578283
    1059611 9u6a:B (1.92) BS01 GTP N/A GO:0000226 ... P02554 40578283
    1059612 9u6a:B (1.92) BS02 A1L8X N/A GO:0000226 ... P02554 40578283
    1059613 9u6d:A (2.54) BS01 GTP N/A N/A Q2XVP4 N/A
    1059614 9u6d:A (2.54) BS02 CA N/A N/A Q2XVP4 N/A
    1059615 9u6d:A (2.54) BS03 A1L8Z N/A N/A Q2XVP4 N/A
    1059616 9u6d:B (2.54) BS01 GDP N/A N/A P02554 N/A
    1059617 9u6d:B (2.54) BS02 A1L8Z N/A N/A P02554 N/A
    1059618 9u6d:C (2.54) BS01 GTP N/A N/A Q2XVP4 N/A
    1059619 9u6d:C (2.54) BS02 CA N/A N/A Q2XVP4 N/A
    1059620 9u6d:C (2.54) BS03 A1L8Z N/A N/A Q2XVP4 N/A
    1059621 9u6d:D (2.54) BS01 MG N/A N/A P02554 N/A
    1059622 9u6d:D (2.54) BS02 GDP N/A N/A P02554 N/A
    1059623 9u6d:D (2.54) BS03 A1L8Z N/A N/A P02554 N/A
    1059624 9u6d:F (2.54) BS01 MG N/A N/A A0A8V0Z8P0 N/A
    1059625 9u6f:A (2.2) BS01 ADP N/A GO:0005515 ... Q56403 41105777
    1059626 9u6f:C (2.2) BS01 ATP N/A GO:0005515 ... Q56403 41105777
    1059627 9u6f:E (2.2) BS01 ATP N/A GO:0005515 ... Q56404 41105777
    1059628 9u6n:A (2.85) BS01 MG N/A GO:0005515 ... Q56403 41105777
    1059629 9u6n:A (2.85) BS02 ADP N/A GO:0005515 ... Q56403 41105777
    1059630 9u6n:B (2.85) BS01 ADP N/A GO:0005515 ... Q56403 41105777
    1059631 9u6n:C (2.85) BS01 ADP N/A GO:0005515 ... Q56403 41105777
    1059632 9u6n:C (2.85) BS02 MG N/A GO:0005515 ... Q56403 41105777
    1059633 9u6o:A (2.8) BS01 ADP N/A GO:0005515 ... Q56403 41105777
    1059634 9u6o:B (2.8) BS01 ADP N/A GO:0005515 ... Q56403 41105777
    1059635 9u6o:C (2.8) BS01 ADP N/A GO:0005515 ... Q56403 41105777
    1059636 9u6p:A (2.85) BS01 ADP N/A GO:0005515 ... Q56403 41105777
    1059637 9u6p:B (2.85) BS01 ADP N/A GO:0005515 ... Q56403 41105777
    1059638 9u6p:C (2.85) BS01 ADP N/A GO:0005515 ... Q56403 41105777
    1059639 9u6t:A (2.9) BS01 ATP N/A GO:0005515 ... Q56403 41105777
    1059640 9u6t:B (2.9) BS01 ADP N/A GO:0005515 ... Q56403 41105777
    1059641 9u6t:C (2.9) BS01 ATP N/A GO:0005515 ... Q56403 41105777
    1059642 9u6t:E (2.9) BS01 ATP N/A GO:0005515 ... Q56404 41105777
    1059643 9u6t:F (2.9) BS01 ATP N/A GO:0005515 ... Q56404 41105777
    1059644 9u6u:A (2.9) BS01 ATP N/A GO:0005515 ... Q56403 41105777
    1059645 9u6u:B (2.9) BS01 ADP N/A GO:0005515 ... Q56403 41105777
    1059646 9u6u:C (2.9) BS01 ATP N/A GO:0005515 ... Q56403 41105777
    1059647 9u6u:E (2.9) BS01 ATP N/A GO:0005515 ... Q56404 41105777
    1059648 9u6u:F (2.9) BS01 ATP N/A GO:0005515 ... Q56404 41105777
    1059649 9u6v:A (3.0) BS01 ATP N/A GO:0005515 ... Q56403 41105777
    1059650 9u6v:B (3.0) BS01 ADP N/A GO:0005515 ... Q56403 41105777
    1059651 9u6v:C (3.0) BS01 ATP N/A GO:0005515 ... Q56403 41105777
    1059652 9u6v:E (3.0) BS01 ATP N/A GO:0005515 ... Q56404 41105777
    1059653 9u6v:F (3.0) BS01 ATP N/A GO:0005515 ... Q56404 41105777
    1059654 9u6w:A (3.1) BS01 MG N/A GO:0005515 ... Q56403 41105777
    1059655 9u6w:A (3.1) BS02 ATP N/A GO:0005515 ... Q56403 41105777
    1059656 9u6w:B (3.1) BS01 ADP N/A GO:0005515 ... Q56403 41105777
    1059657 9u6w:C (3.1) BS01 MG N/A GO:0005515 ... Q56403 41105777
    1059658 9u6w:C (3.1) BS02 ATP N/A GO:0005515 ... Q56403 41105777
    1059659 9u6w:E (3.1) BS01 ATP N/A GO:0005515 ... Q56404 41105777
    1059660 9u6w:F (3.1) BS01 ATP N/A GO:0005515 ... Q56404 41105777
    1059661 9u6x:A (3.0) BS01 ATP N/A GO:0005515 ... Q56403 41105777
    1059662 9u6x:B (3.0) BS01 ADP N/A GO:0005515 ... Q56403 41105777
    1059663 9u6x:C (3.0) BS01 MG N/A GO:0005515 ... Q56403 41105777
    1059664 9u6x:C (3.0) BS02 ATP N/A GO:0005515 ... Q56403 41105777
    1059665 9u6x:E (3.0) BS01 ATP N/A GO:0005515 ... Q56404 41105777
    1059666 9u6y:A (2.9) BS01 ATP N/A GO:0005515 ... Q56403 41105777
    1059667 9u6y:B (2.9) BS01 ADP N/A GO:0005515 ... Q56403 41105777
    1059668 9u6y:C (2.9) BS01 ATP N/A GO:0005515 ... Q56403 41105777
    1059669 9u6y:E (2.9) BS01 ATP N/A GO:0005515 ... Q56404 41105777
    1059670 9u6y:F (2.9) BS01 ATP N/A GO:0005515 ... Q56404 41105777
    1059671 9u76:A (1.77) BS01 MTA N/A N/A Q9YAQ8 N/A
    1059672 9u78:A (1.7) BS01 ZN N/A N/A N/A 40388352
    1059673 9u78:B (1.7) BS01 ZN N/A N/A N/A 40388352
    1059674 9u79:A (1.19) BS01 MTA N/A N/A Q9YAQ8 N/A
    1059675 9u7d:A (2.7) BS01 A1EOE N/A N/A P0DTD1 N/A
    1059676 9u7d:A (2.7) BS02 ZN N/A N/A P0DTD1 N/A
    1059677 9u7d:A (2.7) BS03 ZN N/A N/A P0DTD1 N/A
    1059678 9u7d:A (2.7) BS04 ZN N/A N/A P0DTD1 N/A
    1059679 9u7e:A (2.2) BS01 A1EOH N/A N/A P21802 41490805
    1059680 9u7e:B (2.2) BS01 A1EOH N/A N/A P21802 41490805
    1059681 9u7f:A (2.9) BS01 peptide N/A GO:0001508 ... P51787 41034624
    1059682 9u7f:A (2.9) BS02 peptide N/A GO:0001508 ... P51787 41034624
    1059683 9u7f:A (2.9) BS03 PT5 N/A GO:0001508 ... P51787 41034624
    1059684 9u7f:B (2.9) BS01 CA N/A GO:0000922 ... P0DP23 41034624
    1059685 9u7f:B (2.9) BS02 CA N/A GO:0000922 ... P0DP23 41034624
    1059686 9u7f:D (2.9) BS01 peptide N/A GO:0001508 ... P51787 41034624
    1059687 9u7f:D (2.9) BS02 peptide N/A GO:0001508 ... P51787 41034624
    1059688 9u7f:D (2.9) BS03 PT5 N/A GO:0001508 ... P51787 41034624
    1059689 9u7f:E (2.9) BS01 CA N/A GO:0000922 ... P0DP23 41034624
    1059690 9u7f:E (2.9) BS02 CA N/A GO:0000922 ... P0DP23 41034624
    1059691 9u7f:G (2.9) BS01 peptide N/A GO:0001508 ... P51787 41034624
    1059692 9u7f:G (2.9) BS02 peptide N/A GO:0001508 ... P51787 41034624
    1059693 9u7f:G (2.9) BS03 PT5 N/A GO:0001508 ... P51787 41034624
    1059694 9u7f:H (2.9) BS01 CA N/A GO:0000922 ... P0DP23 41034624
    1059695 9u7f:H (2.9) BS02 CA N/A GO:0000922 ... P0DP23 41034624
    1059696 9u7f:J (2.9) BS01 peptide N/A GO:0001508 ... P51787 41034624
    1059697 9u7f:J (2.9) BS02 peptide N/A GO:0001508 ... P51787 41034624
    1059698 9u7f:J (2.9) BS03 PT5 N/A GO:0001508 ... P51787 41034624
    1059699 9u7f:K (2.9) BS01 CA N/A GO:0000922 ... P0DP23 41034624
    1059700 9u7f:K (2.9) BS02 CA N/A GO:0000922 ... P0DP23 41034624
    1059701 9u7n:A (4.19) BS01 OBZ N/A N/A P9WP51 N/A
    1059702 9u7n:B (4.19) BS01 OBZ N/A N/A P9WP51 N/A
    1059703 9u7n:C (4.19) BS01 OBZ N/A N/A P9WP51 N/A
    1059704 9u7n:D (4.19) BS01 OBZ N/A N/A P9WP51 N/A
    1059705 9u7o:A (3.96) BS01 IK2 N/A N/A P9WP51 N/A
    1059706 9u7o:B (3.96) BS01 IK2 N/A N/A P9WP51 N/A
    1059707 9u7o:C (3.96) BS01 IK2 N/A N/A P9WP51 N/A
    1059708 9u7o:D (3.96) BS01 IK2 N/A N/A P9WP51 N/A
    1059709 9u7s:A (1.99) BS01 A1EOJ N/A N/A P21802 41490805
    1059710 9u7s:B (1.99) BS01 A1EOJ N/A N/A P21802 41490805
    1059711 9u7z:A (2.153) BS01 A1EOD N/A N/A A0A0H2Z2I3 41571690
    1059712 9u80:R (2.94) BS01 A1ECE N/A N/A P30518 41188237
    1059713 9u81:R (3.08) BS01 A1ECF N/A N/A P30518 41188237
    1059714 9u8c:A (3.5) BS01 A1L8T N/A GO:0004672 ... P00533 41196054
    1059715 9u8c:B (3.5) BS01 A1L8T N/A GO:0004672 ... P00533 41196054
    1059716 9u8c:C (3.5) BS01 A1L8T N/A GO:0004672 ... P00533 41196054
    1059717 9u8c:D (3.5) BS01 A1L8T N/A GO:0004672 ... P00533 41196054
    1059718 9u8d:D (3.002) BS01 A1EOD N/A N/A A0A9Q7EI50 41571690
    1059719 9u8g:A (2.0) BS01 CA N/A GO:0016020 ... O15393 40681508
    1059720 9u8g:C (2.0) BS01 CA N/A GO:0016020 ... O15393 40681508
    1059721 9u8m:A (1.758) BS01 ZN N/A GO:0005509 ... Q9VDU7 N/A
    1059722 9u8m:A (1.758) BS02 A1EOF N/A GO:0005509 ... Q9VDU7 N/A
    1059723 9u8m:A (1.758) BS03 FE2 N/A GO:0005509 ... Q9VDU7 N/A
    1059724 9u8t:A (1.4) BS01 GDP N/A N/A P01116 N/A
    1059725 9u8t:A (1.4) BS02 6IC N/A N/A P01116 N/A
    1059726 9u8u:A (1.32) BS01 GDP N/A N/A P01116 N/A
    1059727 9u8u:A (1.32) BS02 6IC N/A N/A P01116 N/A
    1059728 9u8v:A (1.57) BS01 GDP N/A N/A P01116 N/A
    1059729 9u8w:A (1.5) BS01 GDP N/A N/A P01116 N/A
    1059730 9u8w:B (1.5) BS01 GDP N/A N/A P01116 N/A
    1059731 9u8x:A (1.65) BS01 GDP N/A N/A P01116 N/A
    1059732 9u8y:A (1.73) BS01 GDP N/A N/A P01116 N/A
    1059733 9u8z:A (1.2) BS01 GDP N/A N/A P01116 N/A
    1059734 9u90:A (1.2) BS01 GDP N/A N/A P01116 N/A
    1059735 9u90:A (1.2) BS02 MG N/A N/A P01116 N/A
    1059736 9u92:A (2.68) BS01 SAM N/A N/A Q22GC0 41027852
    1059737 9u95:A (1.75) BS01 6IC N/A N/A P01116 N/A
    1059738 9u95:A (1.75) BS02 GDP N/A N/A P01116 N/A
    1059739 9u95:B (1.75) BS01 6IC N/A N/A P01116 N/A
    1059740 9u95:B (1.75) BS02 GDP N/A N/A P01116 N/A
    1059741 9u96:A (3.43) BS01 peptide N/A N/A P0DTD1 N/A
    1059742 9u96:B (3.43) BS01 peptide N/A N/A P0DTD1 N/A
    1059743 9u97:A (1.79) BS01 6IC N/A N/A P01116 N/A
    1059744 9u97:A (1.79) BS02 GDP N/A N/A P01116 N/A
    1059745 9u98:A (2.13) BS01 BGC N/A GO:0004553 ... B1W1N0 40838837
    1059746 9u98:A (2.13) BS02 BGC N/A GO:0004553 ... B1W1N0 40838837
    1059747 9u98:A (2.13) BS03 GLC N/A GO:0004553 ... B1W1N0 40838837
    1059748 9u98:A (2.13) BS04 BGC N/A GO:0004553 ... B1W1N0 40838837
    1059749 9u98:B (2.13) BS01 GLC N/A GO:0004553 ... B1W1N0 40838837
    1059750 9u98:B (2.13) BS02 BGC N/A GO:0004553 ... B1W1N0 40838837
    1059751 9u98:C (2.13) BS01 BGC N/A GO:0004553 ... B1W1N0 40838837
    1059752 9u98:C (2.13) BS02 BGC N/A GO:0004553 ... B1W1N0 40838837
    1059753 9u98:C (2.13) BS03 GLC N/A GO:0004553 ... B1W1N0 40838837
    1059754 9u98:C (2.13) BS04 BGC N/A GO:0004553 ... B1W1N0 40838837
    1059755 9u98:D (2.13) BS01 BGC N/A GO:0004553 ... B1W1N0 40838837
    1059756 9u99:A (2.5) BS01 6IC N/A N/A P01116 N/A
    1059757 9u99:A (2.5) BS02 GDP N/A N/A P01116 N/A
    1059758 9u99:B (2.5) BS01 6IC N/A N/A P01116 N/A
    1059759 9u99:B (2.5) BS02 GDP N/A N/A P01116 N/A
    1059760 9u99:C (2.5) BS01 6IC N/A N/A P01116 N/A
    1059761 9u99:C (2.5) BS02 GDP N/A N/A P01116 N/A
    1059762 9u99:D (2.5) BS01 6IC N/A N/A P01116 N/A
    1059763 9u99:D (2.5) BS02 GDP N/A N/A P01116 N/A
    1059764 9u9c:A (1.25) BS01 ZN N/A GO:0008270 ... C7C422 40687621
    1059765 9u9c:A (1.25) BS02 ZN N/A GO:0008270 ... C7C422 40687621
    1059766 9u9c:A (1.25) BS03 A1EOR N/A GO:0008270 ... C7C422 40687621
    1059767 9u9c:A (1.25) BS04 ZN N/A GO:0008270 ... C7C422 40687621
    1059768 9u9c:A (1.25) BS05 A1EOR N/A GO:0008270 ... C7C422 40687621
    1059769 9u9c:B (1.25) BS01 A1EOR N/A GO:0008270 ... C7C422 40687621
    1059770 9u9c:B (1.25) BS02 ZN N/A GO:0008270 ... C7C422 40687621
    1059771 9u9c:B (1.25) BS03 ZN N/A GO:0008270 ... C7C422 40687621
    1059772 9u9c:B (1.25) BS04 A1EOR N/A GO:0008270 ... C7C422 40687621
    1059773 9u9e:A (2.89) BS01 dna N/A N/A Q22GC0 41027852
    1059774 9u9e:A (2.89) BS02 dna N/A N/A Q22GC0 41027852
    1059775 9u9e:A (2.89) BS03 SAM N/A N/A Q22GC0 41027852
    1059776 9u9e:B (2.89) BS01 dna N/A N/A I7MIF9 41027852
    1059777 9u9e:C (2.89) BS01 dna N/A N/A Q22VV9 41027852
    1059778 9u9e:C (2.89) BS02 dna N/A N/A Q22VV9 41027852
    1059779 9u9f:A (2.77) BS01 PO4 N/A GO:0008271 ... A0A1Y0BRS7 41071878
    1059780 9u9f:B (2.77) BS01 PO4 N/A GO:0008271 ... A0A1Y0BRS7 41071878
    1059781 9u9k:A (2.96) BS01 dna N/A N/A Q22GC0 41027852
    1059782 9u9k:A (2.96) BS02 dna N/A N/A Q22GC0 41027852
    1059783 9u9k:A (2.96) BS03 SAM N/A N/A Q22GC0 41027852
    1059784 9u9k:B (2.96) BS01 dna N/A N/A Q22XT1 41027852
    1059785 9u9u:A (2.6) BS01 A1ES3 N/A GO:0016787 ... Q6NAM1 N/A
    1059786 9u9u:B (2.6) BS01 A1ES3 N/A GO:0016787 ... Q6NAM1 N/A
    1059787 9u9u:C (2.6) BS01 A1ES3 N/A GO:0016787 ... Q6NAM1 N/A
    1059788 9u9u:D (2.6) BS01 A1ES3 N/A GO:0016787 ... Q6NAM1 N/A
    1059789 9u9v:R (2.85) BS01 B40 N/A GO:0004930 ... P07550 N/A
    1059790 9u9y:A (2.7) BS01 ATP N/A GO:0000731 ... P0DV91 N/A
    1059791 9u9y:B (2.7) BS01 ATP N/A GO:0000731 ... P0DV91 N/A
    1059792 9u9y:H (2.7) BS01 ZN N/A N/A N/A N/A
    1059793 9ua2:A (2.83) BS01 rna N/A N/A N/A N/A
    1059794 9ua2:A (2.83) BS02 dna N/A N/A N/A N/A
    1059795 9ua2:A (2.83) BS03 dna N/A N/A N/A N/A
    1059796 9ua2:A (2.83) BS04 MG N/A N/A N/A N/A
    1059797 9ua3:A (3.28) BS01 peptide N/A GO:0000151 ... Q96JP0 40388302
    1059798 9ua3:E (3.28) BS01 peptide N/A GO:0000151 ... Q96JP0 40388302
    1059799 9uab:A (2.55) BS01 CO N/A N/A N/A 41702921
    1059800 9uab:B (2.55) BS01 CO N/A N/A N/A 41702921

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).