SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
  • Sort results by
    << < 521 522 523 524 525 526 527 528 529 530 531 532 533 534 535 536 537 538 539 540 541 > >>
    Go to page

    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    106001 2rs3:1 (3.0) BS01 W59 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15
    GO:0005198 ... P03303 2558377
    106002 2rs5:1 (3.0) BS01 W56 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15
    GO:0005198 ... P03303 2558377
    106003 2rs9:B (-1.00) BS01 peptide ? N/A P55201 N/A
    106004 2rsd:A (-1.00) BS01 ZN 2.3.2.- N/A Q6L4L4 22626555
    106005 2rsd:A (-1.00) BS02 ZN 2.3.2.- N/A Q6L4L4 22626555
    106006 2rsf:A (-1.00) BS01 ATP 2.3.2.27 GO:0008270 ... Q9CZW6 N/A
    106007 2rsh:A (-1.00) BS01 ZN ? N/A Q9P243 N/A
    106008 2rsi:A (-1.00) BS01 ZN ? GO:0003677 ... Q9P243 N/A
    106009 2rsi:A (-1.00) BS02 ZN ? GO:0003677 ... Q9P243 N/A
    106010 2rsi:A (-1.00) BS03 ZN ? GO:0003677 ... Q9P243 N/A
    106011 2rsj:A (-1.00) BS01 ZN ? N/A Q9P243 N/A
    106012 2rsj:A (-1.00) BS02 ZN ? N/A Q9P243 N/A
    106013 2rsj:A (-1.00) BS03 ZN ? N/A Q9P243 N/A
    106014 2rsn:A (-1.00) BS01 peptide ? GO:0042393 ... Q10103 22727667
    106015 2rsq:A (-1.00) BS01 CU1 ? GO:0046872 ... O14618 N/A
    106016 2rt5:A (-1.00) BS01 peptide ? N/A Q96T58 24268649
    106017 2rt9:A (-1.00) BS01 ZN ? GO:0007088 ... Q8CDI2 25161877
    106018 2rt9:A (-1.00) BS02 ZN ? GO:0007088 ... Q8CDI2 25161877
    106019 2rtd:B (1.65) BS01 BTN ? GO:0009374 ... P22629 9405158 BindingDB: Kd=1.000000nM
    106020 2rtd:D (1.65) BS01 BTN ? GO:0009374 ... P22629 9405158 BindingDB: Kd=1.000000nM
    106021 2rte:B (1.5) BS01 BTN ? GO:0009374 ... P22629 9405158 BindingDB: Kd=1.000000nM
    106022 2rte:D (1.5) BS01 BTN ? GO:0009374 ... P22629 9405158 BindingDB: Kd=1.000000nM
    106023 2rtf:B (1.47) BS01 BTN ? GO:0009374 ... P22629 9405158 BindingDB: Kd=1.000000nM
    106024 2rtf:D (1.47) BS01 BTN ? GO:0009374 ... P22629 9405158 BindingDB: Kd=1.000000nM
    106025 2rtg:B (1.39) BS01 BTN ? GO:0009374 ... P22629 9405158 BindingDB: Kd=1.000000nM
    106026 2rtg:D (1.39) BS01 BTN ? GO:0009374 ... P22629 9405158 BindingDB: Kd=1.000000nM
    106027 2rth:B (1.56) BS01 GLL ? GO:0009374 ... P22629 9405158
    106028 2rth:D (1.56) BS01 GLL ? GO:0009374 ... P22629 9405158
    106029 2rti:B (1.4) BS01 GLL ? GO:0009374 ... P22629 9405158
    106030 2rti:D (1.4) BS01 GLL ? GO:0009374 ... P22629 9405158
    106031 2rtj:A (1.4) BS01 GLL ? GO:0009374 ... P22629 9405158
    106032 2rtk:A (1.82) BS01 GLL ? GO:0009374 ... P22629 9405158
    106033 2rtl:A (1.41) BS01 IMI ? GO:0009374 ... P22629 9405158
    106034 2rtm:A (1.3) BS01 IMI ? GO:0009374 ... P22629 9405158
    106035 2rtn:B (1.8) BS01 IMI ? GO:0009374 ... P22629 9405158
    106036 2rtn:D (1.8) BS01 IMI ? GO:0009374 ... P22629 9405158
    106037 2rto:B (1.58) BS01 IMI ? GO:0009374 ... P22629 9405158
    106038 2rto:D (1.58) BS01 IMI ? GO:0009374 ... P22629 9405158
    106039 2rtp:B (1.5) BS01 IMI ? GO:0009374 ... P22629 9405158
    106040 2rtp:D (1.5) BS01 IMI ? GO:0009374 ... P22629 9405158
    106041 2rtq:B (1.39) BS01 IMI ? GO:0009374 ... P22629 9405158
    106042 2rtq:D (1.39) BS01 IMI ? GO:0009374 ... P22629 9405158
    106043 2rtr:B (1.62) BS01 IMI ? GO:0009374 ... P22629 9405158
    106044 2rtr:D (1.62) BS01 IMI ? GO:0009374 ... P22629 9405158
    106045 2ru3:A (-1.00) BS01 rna ? GO:0003676 ... O45189 25132178
    106046 2rui:A (-1.00) BS01 peptide ? N/A Q81V16 26324714
    106047 2ruk:B (-1.00) BS01 peptide ? GO:0000439 ... P32780 25216154
    106048 2rus:A (2.3) BS01 MG 4.1.1.39 GO:0000287 ... P04718 1899197
    106049 2rut:A (-1.00) BS01 ZN ? N/A Q9P243 25801860
    106050 2ruu:A (-1.00) BS01 ZN ? N/A Q9P243 25801860
    106051 2ruv:A (-1.00) BS01 ZN ? N/A Q9P243 25801860
    106052 2ruw:A (-1.00) BS01 ZN ? GO:0003677 ... Q9P243 25801860
    106053 2rux:A (-1.00) BS01 ZN ? N/A Q9P243 25801860
    106054 2ruy:A (-1.00) BS01 ZN ? N/A Q9P243 25801860
    106055 2ruz:A (-1.00) BS01 ZN ? N/A Q9P243 25801860
    106056 2rv0:A (-1.00) BS01 ZN ? N/A Q9P243 25801860
    106057 2rv1:A (-1.00) BS01 ZN ? N/A Q9P243 25801860
    106058 2rv2:A (-1.00) BS01 ZN ? N/A Q9P243 25801860
    106059 2rv3:A (-1.00) BS01 ZN ? N/A Q9P243 25801860
    106060 2rv4:A (-1.00) BS01 ZN ? GO:0003677 ... Q7TS63 25801860
    106061 2rv5:A (-1.00) BS01 ZN ? N/A Q7TS63 25801860
    106062 2rv6:A (-1.00) BS01 ZN ? N/A Q9P243 25801860
    106063 2rv6:A (-1.00) BS02 ZN ? N/A Q9P243 25801860
    106064 2rv6:A (-1.00) BS03 ZN ? N/A Q9P243 25801860
    106065 2rv7:A (-1.00) BS01 ZN ? GO:0003677 ... Q9P243 25801860
    106066 2rv7:A (-1.00) BS02 ZN ? GO:0003677 ... Q9P243 25801860
    106067 2rv7:A (-1.00) BS03 ZN ? GO:0003677 ... Q9P243 25801860
    106068 2rve:A (3.0) BS01 dna 3.1.21.4 GO:0003677 ... P04390 8491171
    106069 2rve:A (3.0) BS02 dna 3.1.21.4 GO:0003677 ... P04390 8491171
    106070 2rve:A (3.0) BS03 dna 3.1.21.4 GO:0003677 ... P04390 8491171
    106071 2rve:B (3.0) BS01 dna 3.1.21.4 GO:0003677 ... P04390 8491171
    106072 2rve:B (3.0) BS02 dna 3.1.21.4 GO:0003677 ... P04390 8491171
    106073 2rvn:A (-1.00) BS01 peptide ? N/A Q61686 26934956
    106074 2sam:A (2.4) BS01 EPN 3.1.13.2
    3.1.26.13
    GO:0004190 ... Q5QGH9 8241141
    106075 2sar:A (1.8) BS01 3GP 4.6.1.24 GO:0003723 ... P05798 1654932
    106076 2sas:A (2.4) BS01 CA ? GO:0005509 ... P04570 8429557
    106077 2sas:A (2.4) BS02 CA ? GO:0005509 ... P04570 8429557
    106078 2sas:A (2.4) BS03 CA ? GO:0005509 ... P04570 8429557
    106079 2sba:A (2.6) BS01 GAL ? GO:0030246 ... P05046 7711015
    106080 2sba:A (2.6) BS02 MN ? GO:0030246 ... P05046 7711015
    106081 2sba:A (2.6) BS03 CA ? GO:0030246 ... P05046 7711015
    106082 2sbl:A (2.6) BS01 FE 1.13.11.12 GO:0005506 ... P08170 8502991
    106083 2sbl:B (2.6) BS01 FE 1.13.11.12 GO:0005506 ... P08170 8502991
    106084 2scp:A (2.0) BS01 CA ? GO:0005509 ... P04571 1560459
    106085 2scp:A (2.0) BS02 CA ? GO:0005509 ... P04571 1560459
    106086 2scp:A (2.0) BS03 CA ? GO:0005509 ... P04571 1560459
    106087 2scp:B (2.0) BS01 CA ? GO:0005509 ... P04571 1560459
    106088 2scp:B (2.0) BS02 CA ? GO:0005509 ... P04571 1560459
    106089 2scp:B (2.0) BS03 CA ? GO:0005509 ... P04571 1560459
    106090 2scu:A (2.3) BS01 COA 6.2.1.5 GO:0003824 ... P0AGE9 9917402
    106091 2scu:B (2.3) BS01 COA 6.2.1.5 GO:0000287 ... P0A836 9917402
    106092 2scu:D (2.3) BS01 COA 6.2.1.5 GO:0003824 ... P0AGE9 9917402
    106093 2scu:E (2.3) BS01 COA 6.2.1.5 GO:0000287 ... P0A836 9917402
    106094 2seb:A (2.5) BS01 peptide ? GO:0006955 ... P01903 9354468
    106095 2seb:B (2.5) BS01 peptide ? GO:0006955 ... P01911 9354468
    106096 2sec:E (1.8) BS01 CA 3.4.21.62 GO:0004252 ... P00780 3064813
    106097 2sec:E (1.8) BS02 CA 3.4.21.62 GO:0004252 ... P00780 3064813
    106098 2sec:E (1.8) BS03 CA 3.4.21.62 GO:0004252 ... P00780 3064813
    106099 2sem:A (2.2) BS01 peptide ? N/A P29355 9851931
    106100 2sem:B (2.2) BS01 peptide ? N/A P29355 9851931
    106101 2sfp:A (1.9) BS01 PLP 5.1.1.1 GO:0003824 ... P10724 10079072
    106102 2sfp:B (1.9) BS01 PLP 5.1.1.1 GO:0003824 ... P10724 10079072
    106103 2shk:A (2.6) BS01 MG 2.7.1.71 GO:0000287 ... P10880 15299895
    106104 2shk:A (2.6) BS02 MG 2.7.1.71 GO:0000287 ... P10880 15299895
    106105 2shk:B (2.6) BS01 MG 2.7.1.71 GO:0000287 ... P10880 15299895
    106106 2shk:B (2.6) BS02 ADP 2.7.1.71 GO:0000287 ... P10880 15299895
    106107 2shp:A (2.0) BS01 CAT 3.1.3.48 GO:0004725 ... Q06124 9491886
    106108 2shp:B (2.0) BS01 CAT 3.1.3.48 GO:0004725 ... Q06124 9491886
    106109 2sic:E (1.8) BS01 CA 3.4.21.62 GO:0004252 ... P00782 1920411
    106110 2sic:E (1.8) BS02 CA 3.4.21.62 GO:0004252 ... P00782 1920411
    106111 2sim:A (1.6) BS01 DAN 3.2.1.18 GO:0004308 ... P29768 8656428 MOAD: Ki=0.38mM
    106112 2skc:A (2.4) BS01 GLC 2.4.1.1 GO:0004645 ... P00489 8976550
    106113 2skc:A (2.4) BS02 PLP 2.4.1.1 GO:0004645 ... P00489 8976550
    106114 2skc:A (2.4) BS03 FPO 2.4.1.1 GO:0004645 ... P00489 8976550
    106115 2skc:A (2.4) BS04 IMP 2.4.1.1 GO:0004645 ... P00489 8976550
    106116 2skd:A (2.4) BS01 GLC 2.4.1.1 GO:0004645 ... P00489 8976550
    106117 2skd:A (2.4) BS02 PO4 2.4.1.1 GO:0004645 ... P00489 8976550
    106118 2skd:A (2.4) BS03 PLP 2.4.1.1 GO:0004645 ... P00489 8976550
    106119 2skd:A (2.4) BS04 IMP 2.4.1.1 GO:0004645 ... P00489 8976550
    106120 2ske:A (2.46) BS01 GLC 2.4.1.1 GO:0004645 ... P00489 8976550
    106121 2ske:A (2.46) BS02 PO3 2.4.1.1 GO:0004645 ... P00489 8976550
    106122 2ske:A (2.46) BS03 PLP 2.4.1.1 GO:0004645 ... P00489 8976550
    106123 2ske:A (2.46) BS04 IMP 2.4.1.1 GO:0004645 ... P00489 8976550
    106124 2sli:A (1.8) BS01 SKD 4.2.2.15 GO:0004308 ... Q27701 9878409
    106125 2sni:E (2.1) BS01 CA 3.4.21.62 GO:0004252 ... P00782 3064813
    106126 2sni:E (2.1) BS02 CA 3.4.21.62 GO:0004252 ... P00782 3064813
    106127 2snm:A (1.97) BS01 CA 3.1.31.1 GO:0003676 ... P00644 1920420
    106128 2snm:A (1.97) BS02 THP 3.1.31.1 GO:0003676 ... P00644 1920420
    106129 2sns:A (1.5) BS01 CA 3.1.31.1 GO:0003676 ... P00644 N/A
    106130 2sns:A (1.5) BS02 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    106131 2sod:B (2.0) BS01 CU 1.15.1.1 GO:0000209 ... P00442 7175933
    106132 2sod:B (2.0) BS02 ZN 1.15.1.1 GO:0000209 ... P00442 7175933
    106133 2sod:G (2.0) BS01 CU 1.15.1.1 GO:0000209 ... P00442 7175933
    106134 2sod:G (2.0) BS02 ZN 1.15.1.1 GO:0000209 ... P00442 7175933
    106135 2sod:O (2.0) BS01 CU 1.15.1.1 GO:0000209 ... P00442 7175933
    106136 2sod:O (2.0) BS02 ZN 1.15.1.1 GO:0000209 ... P00442 7175933
    106137 2sod:Y (2.0) BS01 CU 1.15.1.1 GO:0000209 ... P00442 7175933
    106138 2sod:Y (2.0) BS02 ZN 1.15.1.1 GO:0000209 ... P00442 7175933
    106139 2spl:A (1.7) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 1629229
    106140 2spm:A (1.7) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 1629229
    106141 2spn:A (1.7) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 1629229
    106142 2spn:A (1.7) BS02 OXY 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 1629229
    106143 2spo:A (1.7) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 1629229
    106144 2sqc:A (2.0) BS01 C8E 4.2.1.129
    5.4.99.17
    GO:0005811 ... P33247 9931258
    106145 2sqc:A (2.0) BS02 C8E 4.2.1.129
    5.4.99.17
    GO:0005811 ... P33247 9931258
    106146 2sqc:A (2.0) BS03 C8E 4.2.1.129
    5.4.99.17
    GO:0005811 ... P33247 9931258
    106147 2sqc:A (2.0) BS04 C8E 4.2.1.129
    5.4.99.17
    GO:0005811 ... P33247 9931258
    106148 2sqc:B (2.0) BS01 C8E 4.2.1.129
    5.4.99.17
    GO:0005811 ... P33247 9931258
    106149 2sqc:B (2.0) BS02 C8E 4.2.1.129
    5.4.99.17
    GO:0005811 ... P33247 9931258
    106150 2sqc:B (2.0) BS03 C8E 4.2.1.129
    5.4.99.17
    GO:0005811 ... P33247 9931258
    106151 2sqc:B (2.0) BS04 C8E 4.2.1.129
    5.4.99.17
    GO:0005811 ... P33247 9931258
    106152 2src:A (1.5) BS01 ANP 2.7.10.2 GO:0004672 ... P12931 10360179
    106153 2srt:A (-1.00) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 7656014
    106154 2srt:A (-1.00) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 7656014
    106155 2srt:A (-1.00) BS03 8MI 3.4.24.17 GO:0004222 ... P08254 7656014
    106156 2ssp:E (2.25) BS01 dna 3.2.2.27 GO:0004844 ... P13051 9724657
    106157 2ssp:E (2.25) BS02 dna 3.2.2.27 GO:0004844 ... P13051 9724657
    106158 2st1:A (1.8) BS01 CA 3.4.21.62 GO:0004252 ... P00782 3286644
    106159 2st1:A (1.8) BS02 CA 3.4.21.62 GO:0004252 ... P00782 3286644
    106160 2sta:E (1.8) BS01 peptide 3.4.21.4 GO:0004252 ... P35031 10089404
    106161 2sta:E (1.8) BS02 CA 3.4.21.4 GO:0004252 ... P35031 10089404
    106162 2stb:E (1.8) BS01 peptide 3.4.21.4 GO:0004252 ... P35031 10089404
    106163 2stb:E (1.8) BS02 CA 3.4.21.4 GO:0004252 ... P35031 10089404
    106164 2std:A (2.1) BS01 CRP 4.2.1.94 GO:0005768 ... P56221 9665698 MOAD: Kd=0.14nM
    BindingDB: Ki=30nM
    106165 2stt:A (-1.00) BS01 dna ? GO:0003700 ... P14921 9460239
    106166 2stt:A (-1.00) BS02 dna ? GO:0003700 ... P14921 9460239
    106167 2stw:A (-1.00) BS01 dna ? GO:0003700 ... P14921 9460239
    106168 2stw:A (-1.00) BS02 dna ? GO:0003700 ... P14921 9460239
    106169 2taa:A (3.0) BS01 CA 3.2.1.1 GO:0004556 ... P0C1B3 6609921
    106170 2taa:B (3.0) BS01 CA 3.2.1.1 GO:0004556 ... P0C1B3 6609921
    106171 2taa:C (3.0) BS01 CA 3.2.1.1 GO:0004556 ... P0C1B3 6609921
    106172 2tbs:A (1.8) BS01 CA 3.4.21.4 GO:0004252 ... P35031 7846025
    106173 2tbv:A (2.9) BS01 CA ? GO:0005198 ... P11795 6481803
    106174 2tbv:A (2.9) BS02 CA ? GO:0005198 ... P11795 6481803
    106175 2tbv:A (2.9) BS03 CA ? GO:0005198 ... P11795 6481803
    106176 2tbv:B (2.9) BS01 CA ? GO:0005198 ... P11795 6481803
    106177 2tbv:B (2.9) BS02 CA ? GO:0005198 ... P11795 6481803
    106178 2tbv:B (2.9) BS03 CA ? GO:0005198 ... P11795 6481803
    106179 2tbv:C (2.9) BS01 CA ? GO:0005198 ... P11795 6481803
    106180 2tbv:C (2.9) BS02 CA ? GO:0005198 ... P11795 6481803
    106181 2tbv:C (2.9) BS03 CA ? GO:0005198 ... P11795 6481803
    106182 2tci:D (1.8) BS01 peptide ? GO:0005179 ... P01315 7492558
    106183 2tci:D (1.8) BS02 peptide ? GO:0005179 ... P01315 7492558
    106184 2tcl:A (2.2) BS01 ZN 3.4.24.7 GO:0004222 ... P03956 7656013
    106185 2tcl:A (2.2) BS02 ZN 3.4.24.7 GO:0004222 ... P03956 7656013
    106186 2tcl:A (2.2) BS03 CA 3.4.24.7 GO:0004222 ... P03956 7656013
    106187 2tcl:A (2.2) BS04 CA 3.4.24.7 GO:0004222 ... P03956 7656013
    106188 2tcl:A (2.2) BS05 RO4 3.4.24.7 GO:0004222 ... P03956 7656013 MOAD: ic50=9nM
    BindingDB: IC50=40nM
    106189 2tct:A (2.1) BS01 CTC ? GO:0000976 ... P0ACT4 7707374 MOAD: Ka~10000000M^-1
    106190 2tdd:A (2.7) BS01 THF 2.1.1.45 GO:0004799 ... P00469 8343503
    106191 2tdd:A (2.7) BS02 UFP 2.1.1.45 GO:0004799 ... P00469 8343503 BindingDB: Ki=14nM, Kd=10nM
    106192 2tdm:A (2.55) BS01 UMP 2.1.1.45 GO:0004799 ... P00469 8371269
    106193 2tdt:A (2.0) BS01 COA 2.3.1.117 GO:0005737 ... P56220 9671504
    106194 2tdt:A (2.0) BS02 NPI 2.3.1.117 GO:0005737 ... P56220 9671504
    106195 2tec:E (1.98) BS01 CA 3.4.21.66 GO:0004252 ... P04072 2689655
    106196 2tec:E (1.98) BS02 CA 3.4.21.66 GO:0004252 ... P04072 2689655
    106197 2tec:E (1.98) BS03 CA 3.4.21.66 GO:0004252 ... P04072 2689655
    106198 2tep:A (2.5) BS01 GAL ? GO:0030246 ... P02872 N/A
    106199 2tep:A (2.5) BS02 CA ? GO:0030246 ... P02872 N/A
    106200 2tep:A (2.5) BS03 MN ? GO:0030246 ... P02872 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).