SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
  • Sort results by
    << < 5303 5304 5305 5306 5307 5308 5309 5310 5311 5312 5313 5314 5315 5316 5317 5318 5319 5320 5321 5322 5323 > >>
    Go to page

    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1062401 9v25:lf (3.0) BS01 rna N/A GO:0002181 ... C4LU13 40835601
    1062402 9v25:lg (3.0) BS01 rna N/A GO:0003735 ... C4LT96 40835601
    1062403 9v25:lh (3.0) BS01 rna N/A GO:0003735 ... C4LYA7 40835601
    1062404 9v25:li (3.0) BS01 rna N/A GO:0000463 ... N/A 40835601
    1062405 9v25:li (3.0) BS02 rna N/A GO:0000463 ... N/A 40835601
    1062406 9v25:lj (3.0) BS01 rna N/A GO:0002181 ... B1N4V3 40835601
    1062407 9v25:lk (3.0) BS01 rna N/A GO:0002181 ... C4LZH1 40835601
    1062408 9v25:ll (3.0) BS01 rna N/A GO:0000448 ... C4M0X0 40835601
    1062409 9v25:ll (3.0) BS02 rna N/A GO:0000448 ... C4M0X0 40835601
    1062410 9v25:lm (3.0) BS01 rna N/A GO:0003735 ... A0A175JXH6 40835601
    1062411 9v25:ln (3.0) BS01 rna N/A GO:0003735 ... A0A175JTS8 40835601
    1062412 9v25:lo (3.0) BS01 rna N/A GO:0002181 ... C4LTA2 40835601
    1062413 9v25:lo (3.0) BS02 rna N/A GO:0002181 ... C4LTA2 40835601
    1062414 9v25:lp (3.0) BS01 rna N/A GO:0003735 ... C4LV09 40835601
    1062415 9v25:lq (3.0) BS01 rna N/A GO:0002181 ... C4LS99 40835601
    1062416 9v25:lq (3.0) BS02 rna N/A GO:0002181 ... C4LS99 40835601
    1062417 9v26:lD (3.1) BS01 rna N/A GO:0002181 ... O15574 40835601
    1062418 9v26:lE (3.1) BS01 rna N/A GO:0003723 ... C4LW09 40835601
    1062419 9v26:lF (3.1) BS01 rna N/A GO:0003723 ... B1N384 40835601
    1062420 9v26:lF (3.1) BS02 rna N/A GO:0003723 ... B1N384 40835601
    1062421 9v26:lG (3.1) BS01 rna N/A GO:0000027 ... C4LU56 40835601
    1062422 9v26:lG (3.1) BS02 rna N/A GO:0000027 ... C4LU56 40835601
    1062423 9v26:lH (3.1) BS01 rna N/A GO:0002181 ... O15595 40835601
    1062424 9v26:lI (3.1) BS01 rna N/A GO:0000463 ... C4M751 40835601
    1062425 9v26:lI (3.1) BS02 rna N/A GO:0000463 ... C4M751 40835601
    1062426 9v26:lJ (3.1) BS01 rna N/A GO:0000470 ... C4LVH6 40835601
    1062427 9v26:lJ (3.1) BS02 rna N/A GO:0000470 ... C4LVH6 40835601
    1062428 9v26:lK (3.1) BS01 rna N/A GO:0002181 ... C4LVZ9 40835601
    1062429 9v26:lL (3.1) BS01 rna N/A GO:0003735 ... C4LTA0 40835601
    1062430 9v26:lL (3.1) BS02 rna N/A GO:0003735 ... C4LTA0 40835601
    1062431 9v26:lL (3.1) BS03 rna N/A GO:0003735 ... C4LTA0 40835601
    1062432 9v26:lM (3.1) BS01 rna N/A GO:0003723 ... C4LZG9 40835601
    1062433 9v26:lM (3.1) BS02 rna N/A GO:0003723 ... C4LZG9 40835601
    1062434 9v26:lN (3.1) BS01 rna N/A GO:0003723 ... C4M8R8 40835601
    1062435 9v26:lN (3.1) BS02 rna N/A GO:0003723 ... C4M8R8 40835601
    1062436 9v26:lO (3.1) BS01 rna N/A GO:0003729 ... C4M3F3 40835601
    1062437 9v26:lP (3.1) BS01 rna N/A GO:0003723 ... C4M8C9 40835601
    1062438 9v26:lQ (3.1) BS01 rna N/A GO:0002181 ... C4M7U2 40835601
    1062439 9v26:lQ (3.1) BS02 rna N/A GO:0002181 ... C4M7U2 40835601
    1062440 9v26:lR (3.1) BS01 rna N/A GO:0002181 ... C4LX05 40835601
    1062441 9v26:lR (3.1) BS02 rna N/A GO:0002181 ... C4LX05 40835601
    1062442 9v26:lS (3.1) BS01 rna N/A GO:0002181 ... C4LXC8 40835601
    1062443 9v26:lT (3.1) BS01 rna N/A GO:0002181 ... C4LXZ0 40835601
    1062444 9v26:lT (3.1) BS02 rna N/A GO:0002181 ... C4LXZ0 40835601
    1062445 9v26:lU (3.1) BS01 rna N/A GO:0003723 ... C4LWJ4 40835601
    1062446 9v26:lV (3.1) BS01 rna N/A GO:0003735 ... C4LV69 40835601
    1062447 9v26:lV (3.1) BS02 rna N/A GO:0003735 ... C4LV69 40835601
    1062448 9v26:lW (3.1) BS01 rna N/A GO:0002181 ... C4LW40 40835601
    1062449 9v26:lX (3.1) BS01 rna N/A GO:0003735 ... C4LVB0 40835601
    1062450 9v26:lX (3.1) BS02 rna N/A GO:0003735 ... C4LVB0 40835601
    1062451 9v26:lY (3.1) BS01 rna N/A GO:0003735 ... C4LV64 40835601
    1062452 9v26:lY (3.1) BS02 rna N/A GO:0003735 ... C4LV64 40835601
    1062453 9v26:lZ (3.1) BS01 rna N/A GO:0002181 ... C4LSA0 40835601
    1062454 9v26:la (3.1) BS01 rna N/A GO:0002181 ... C4LSU3 40835601
    1062455 9v26:la (3.1) BS02 rna N/A GO:0002181 ... C4LSU3 40835601
    1062456 9v26:lb (3.1) BS01 rna N/A GO:0003735 ... C4M727 40835601
    1062457 9v26:lc (3.1) BS01 rna N/A GO:0003735 ... Q9BI06 40835601
    1062458 9v26:ld (3.1) BS01 rna N/A GO:0002181 ... C4LUN3 40835601
    1062459 9v26:le (3.1) BS01 rna N/A GO:0003723 ... C4M919 40835601
    1062460 9v26:lf (3.1) BS01 rna N/A GO:0002181 ... C4LU13 40835601
    1062461 9v26:lg (3.1) BS01 rna N/A GO:0003735 ... C4LT96 40835601
    1062462 9v26:lh (3.1) BS01 rna N/A GO:0003735 ... C4LYA7 40835601
    1062463 9v26:li (3.1) BS01 rna N/A GO:0000463 ... N/A 40835601
    1062464 9v26:li (3.1) BS02 rna N/A GO:0000463 ... N/A 40835601
    1062465 9v26:lj (3.1) BS01 rna N/A GO:0002181 ... B1N4V3 40835601
    1062466 9v26:lk (3.1) BS01 rna N/A GO:0002181 ... C4LZH1 40835601
    1062467 9v26:ll (3.1) BS01 rna N/A GO:0000448 ... C4M0X0 40835601
    1062468 9v26:ll (3.1) BS02 rna N/A GO:0000448 ... C4M0X0 40835601
    1062469 9v26:lm (3.1) BS01 rna N/A GO:0003735 ... A0A175JXH6 40835601
    1062470 9v26:lm (3.1) BS02 rna N/A GO:0003735 ... A0A175JXH6 40835601
    1062471 9v26:ln (3.1) BS01 rna N/A GO:0003735 ... A0A175JTS8 40835601
    1062472 9v26:lo (3.1) BS01 rna N/A GO:0002181 ... C4LTA2 40835601
    1062473 9v26:lo (3.1) BS02 rna N/A GO:0002181 ... C4LTA2 40835601
    1062474 9v26:lp (3.1) BS01 rna N/A GO:0003735 ... C4LV09 40835601
    1062475 9v26:lq (3.1) BS01 rna N/A GO:0002181 ... C4LS99 40835601
    1062476 9v26:lq (3.1) BS02 rna N/A GO:0002181 ... C4LS99 40835601
    1062477 9v26:sB (3.1) BS01 rna N/A GO:0003729 ... C4M7G9 40835601
    1062478 9v26:sC (3.1) BS01 rna N/A GO:0003735 ... P38654 40835601
    1062479 9v26:sD (3.1) BS01 rna N/A GO:0000028 ... C4LZQ8 40835601
    1062480 9v26:sE (3.1) BS01 rna N/A GO:0002181 ... C4LW10 40835601
    1062481 9v26:sc (3.1) BS01 rna N/A GO:0003723 ... C4M7U0 40835601
    1062482 9v26:sd (3.1) BS01 rna N/A GO:0003723 ... C4LT02 40835601
    1062483 9v26:se (3.1) BS01 rna N/A GO:0003735 ... C4M609 40835601
    1062484 9v26:sf (3.1) BS01 rna N/A GO:0003723 ... C4LYF4 40835601
    1062485 9v26:sg (3.1) BS01 peptide N/A GO:0003723 ... O15587 40835601
    1062486 9v26:sg (3.1) BS02 rna N/A GO:0003723 ... O15587 40835601
    1062487 9v26:sh (3.1) BS01 rna N/A GO:0003735 ... C4LXN2 40835601
    1062488 9v26:si (3.1) BS01 rna N/A GO:0003735 ... C4M9F9 40835601
    1062489 9v26:sj (3.1) BS01 rna N/A GO:0002181 ... C4M8Y8 40835601
    1062490 9v26:sk (3.1) BS01 rna N/A GO:0003723 ... O15612 40835601
    1062491 9v26:sl (3.1) BS01 rna N/A GO:0000822 ... C4LVC0 40835601
    1062492 9v26:sm (3.1) BS01 rna N/A GO:0003735 ... C4M979 40835601
    1062493 9v26:so (3.1) BS01 rna N/A GO:0000462 ... A0A175JJM9 40835601
    1062494 9v26:sp (3.1) BS01 rna N/A GO:0000028 ... B1N2I3 40835601
    1062495 9v26:sq (3.1) BS01 rna N/A GO:0003723 ... C4M7H3 40835601
    1062496 9v26:sr (3.1) BS01 rna N/A GO:0003735 ... C4LXM0 40835601
    1062497 9v26:ss (3.1) BS01 rna N/A GO:0000462 ... C4M2R7 40835601
    1062498 9v26:st (3.1) BS01 rna N/A GO:0003735 ... C4M0Z2 40835601
    1062499 9v26:su (3.1) BS01 rna N/A GO:0003676 ... P48151 40835601
    1062500 9v26:sv (3.1) BS01 rna N/A GO:0003735 ... O15631 40835601
    1062501 9v26:sw (3.1) BS01 rna N/A GO:0003735 ... C4M5V7 40835601
    1062502 9v26:sy (3.1) BS01 rna N/A GO:0003735 ... C4M5B7 40835601
    1062503 9v27:sB (3.21) BS01 rna N/A GO:0003729 ... C4M7G9 40835601
    1062504 9v27:sC (3.21) BS01 rna N/A GO:0003735 ... P38654 40835601
    1062505 9v27:sb (3.21) BS01 rna N/A GO:0000028 ... C4M5A0 40835601
    1062506 9v27:sc (3.21) BS01 rna N/A GO:0003723 ... C4M7U0 40835601
    1062507 9v27:se (3.21) BS01 rna N/A GO:0003735 ... C4M609 40835601
    1062508 9v27:sf (3.21) BS01 rna N/A GO:0003723 ... C4LYF4 40835601
    1062509 9v27:sh (3.21) BS01 rna N/A GO:0003735 ... C4LXN2 40835601
    1062510 9v27:si (3.21) BS01 rna N/A GO:0003735 ... C4M9F9 40835601
    1062511 9v27:sj (3.21) BS01 rna N/A GO:0002181 ... C4M0Q2 40835601
    1062512 9v27:sk (3.21) BS01 rna N/A GO:0003723 ... O15612 40835601
    1062513 9v27:sm (3.21) BS01 rna N/A GO:0003735 ... C4M979 40835601
    1062514 9v27:so (3.21) BS01 rna N/A GO:0000462 ... A0A175JJM9 40835601
    1062515 9v27:sp (3.21) BS01 rna N/A GO:0000028 ... B1N2I3 40835601
    1062516 9v27:sr (3.21) BS01 rna N/A GO:0003735 ... C4LXM0 40835601
    1062517 9v27:sy (3.21) BS01 rna N/A GO:0003735 ... C4M5B7 40835601
    1062518 9v27:sz (3.21) BS01 rna N/A GO:0002181 ... C4M549 40835601
    1062519 9v28:sA (3.4) BS01 rna N/A GO:0003735 ... C4M9F4 40835601
    1062520 9v28:sD (3.4) BS01 rna N/A GO:0000028 ... C4LZQ8 40835601
    1062521 9v28:sE (3.4) BS01 rna N/A GO:0002181 ... C4LW10 40835601
    1062522 9v28:sd (3.4) BS01 rna N/A GO:0003723 ... C4LT02 40835601
    1062523 9v28:sg (3.4) BS01 rna N/A GO:0003723 ... O15587 40835601
    1062524 9v28:sl (3.4) BS01 rna N/A GO:0000822 ... C4LVC0 40835601
    1062525 9v28:sq (3.4) BS01 rna N/A GO:0003723 ... C4M7H3 40835601
    1062526 9v28:ss (3.4) BS01 rna N/A GO:0000462 ... C4M2R7 40835601
    1062527 9v28:st (3.4) BS01 rna N/A GO:0003735 ... C4M0Z2 40835601
    1062528 9v28:su (3.4) BS01 rna N/A GO:0003676 ... P48151 40835601
    1062529 9v28:sv (3.4) BS01 rna N/A GO:0003735 ... O15631 40835601
    1062530 9v28:sw (3.4) BS01 rna N/A GO:0003735 ... C4M5V7 40835601
    1062531 9v29:sB (3.2) BS01 rna N/A GO:0003729 ... C4M7G9 40835601
    1062532 9v29:sc (3.2) BS01 rna N/A GO:0003723 ... C4M7U0 40835601
    1062533 9v29:se (3.2) BS01 rna N/A GO:0003735 ... C4M609 40835601
    1062534 9v29:sf (3.2) BS01 rna N/A GO:0003723 ... C4LYF4 40835601
    1062535 9v29:sh (3.2) BS01 rna N/A GO:0003735 ... C4LXN2 40835601
    1062536 9v29:sj (3.2) BS01 rna N/A GO:0002181 ... C4M0Q2 40835601
    1062537 9v29:sk (3.2) BS01 rna N/A GO:0003723 ... O15612 40835601
    1062538 9v29:sm (3.2) BS01 rna N/A GO:0003735 ... C4M979 40835601
    1062539 9v29:so (3.2) BS01 peptide N/A GO:0000462 ... A0A175JJM9 40835601
    1062540 9v29:so (3.2) BS02 rna N/A GO:0000462 ... A0A175JJM9 40835601
    1062541 9v29:sp (3.2) BS01 rna N/A GO:0000028 ... B1N2I3 40835601
    1062542 9v29:sr (3.2) BS01 rna N/A GO:0003735 ... C4LXM0 40835601
    1062543 9v29:sy (3.2) BS01 rna N/A GO:0003735 ... C4M5B7 40835601
    1062544 9v2n:R (2.63) BS01 A1EQV N/A GO:0001616 ... Q92847 40542284
    1062545 9v33:A (5.9) BS01 dna N/A N/A A0A310TTQ1 41782825
    1062546 9v33:A (5.9) BS02 dna N/A N/A A0A310TTQ1 41782825
    1062547 9v33:B (5.9) BS01 dna N/A N/A P62799 41782825
    1062548 9v33:B (5.9) BS02 dna N/A N/A P62799 41782825
    1062549 9v33:C (5.9) BS01 dna N/A N/A Q6AZJ8 41782825
    1062550 9v33:C (5.9) BS02 dna N/A N/A Q6AZJ8 41782825
    1062551 9v33:D (5.9) BS01 dna N/A N/A A0A8J0U496 41782825
    1062552 9v33:D (5.9) BS02 dna N/A N/A A0A8J0U496 41782825
    1062553 9v33:E (5.9) BS01 dna N/A N/A A0A310TTQ1 41782825
    1062554 9v33:E (5.9) BS02 dna N/A N/A A0A310TTQ1 41782825
    1062555 9v33:F (5.9) BS01 dna N/A N/A P62799 41782825
    1062556 9v33:F (5.9) BS02 dna N/A N/A P62799 41782825
    1062557 9v33:G (5.9) BS01 dna N/A N/A Q6AZJ8 41782825
    1062558 9v33:G (5.9) BS02 dna N/A N/A Q6AZJ8 41782825
    1062559 9v33:H (5.9) BS01 dna N/A N/A A0A8J0U496 41782825
    1062560 9v33:H (5.9) BS02 dna N/A N/A A0A8J0U496 41782825
    1062561 9v33:K (5.9) BS01 peptide N/A N/A Q7K5N4 41782825
    1062562 9v36:A (2.77) BS01 dna N/A N/A P26358 N/A
    1062563 9v36:A (2.77) BS02 dna N/A N/A P26358 N/A
    1062564 9v36:A (2.77) BS03 ZN N/A N/A P26358 N/A
    1062565 9v36:A (2.77) BS04 ZN N/A N/A P26358 N/A
    1062566 9v36:A (2.77) BS05 SAH N/A N/A P26358 N/A
    1062567 9v36:A (2.77) BS06 A1EQT N/A N/A P26358 N/A
    1062568 9v42:D (3.37) BS01 rna N/A N/A Q9UPY3 41781616
    1062569 9v42:D (3.37) BS02 CA N/A N/A Q9UPY3 41781616
    1062570 9v42:D (3.37) BS03 CA N/A N/A Q9UPY3 41781616
    1062571 9v43:B (3.34) BS01 rna N/A N/A Q9UPY3 41781616
    1062572 9v43:B (3.34) BS02 CA N/A N/A Q9UPY3 41781616
    1062573 9v43:B (3.34) BS03 CA N/A N/A Q9UPY3 41781616
    1062574 9v44:A (2.97) BS01 rna N/A GO:0003723 ... H9XIJ2 41188214
    1062575 9v44:A (2.97) BS02 rna N/A GO:0003723 ... H9XIJ2 41188214
    1062576 9v44:B (2.97) BS01 rna N/A GO:0000166 ... H9XIJ3 41188214
    1062577 9v44:B (2.97) BS02 rna N/A GO:0000166 ... H9XIJ3 41188214
    1062578 9v44:C (2.97) BS01 rna N/A GO:0001172 ... P31345 41188214
    1062579 9v44:D (2.97) BS01 rna N/A GO:0003723 ... Q9WLG4 41188214
    1062580 9v44:D (2.97) BS02 rna N/A GO:0003723 ... Q9WLG4 41188214
    1062581 9v46:A (3.62) BS01 rna N/A GO:0003723 ... H9XIJ2 41188214
    1062582 9v46:A (3.62) BS02 rna N/A GO:0003723 ... H9XIJ2 41188214
    1062583 9v46:B (3.62) BS01 rna N/A GO:0000166 ... H9XIJ3 41188214
    1062584 9v46:B (3.62) BS02 rna N/A GO:0000166 ... H9XIJ3 41188214
    1062585 9v46:C (3.62) BS01 rna N/A GO:0001172 ... P31345 41188214
    1062586 9v47:B (4.52) BS01 rna N/A GO:0003723 ... Q9WLG4 41188214
    1062587 9v48:D (4.75) BS01 rna N/A GO:0003723 ... Q9WLG4 41188214
    1062588 9v48:D (4.75) BS02 rna N/A GO:0003723 ... Q9WLG4 41188214
    1062589 9v49:A (2.2) BS01 A1MAF N/A GO:0008800 ... P52682 41002159
    1062590 9v49:B (2.2) BS01 A1MAF N/A GO:0008800 ... P52682 41002159
    1062591 9v4a:A (2.4) BS01 RM9 N/A GO:0008800 ... P52682 41002159
    1062592 9v4h:C (2.2) BS01 FPS N/A GO:0004659 ... A0A0F7CMZ4 40968638
    1062593 9v4h:D (2.2) BS01 FPS N/A GO:0004659 ... A0A0F7CMZ4 40968638
    1062594 9v4j:D (2.0) BS01 FPS N/A GO:0004659 ... A0A0F7CMZ4 40968638
    1062595 9v4m:C (3.0) BS01 dna N/A GO:0003677 ... Q8RQE9 41094128
    1062596 9v4m:C (3.0) BS02 dna N/A GO:0003677 ... Q8RQE9 41094128
    1062597 9v4m:C (3.0) BS03 A1IF9 N/A GO:0003677 ... Q8RQE9 41094128
    1062598 9v4m:D (3.0) BS01 dna N/A GO:0000287 ... Q8RQE8 41094128
    1062599 9v4m:D (3.0) BS02 dna N/A GO:0000287 ... Q8RQE8 41094128
    1062600 9v4m:D (3.0) BS03 A1IF9 N/A GO:0000287 ... Q8RQE8 41094128

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).