SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1062801 9vbx:B (2.4) BS03 MN N/A N/A N/A 41786775
    1062802 9vbx:C (2.4) BS01 MAN N/A N/A N/A 41786775
    1062803 9vbx:C (2.4) BS02 CA N/A N/A N/A 41786775
    1062804 9vbx:C (2.4) BS03 MN N/A N/A N/A 41786775
    1062805 9vbx:D (2.4) BS01 MAN N/A N/A N/A 41786775
    1062806 9vbx:D (2.4) BS02 CA N/A N/A N/A 41786775
    1062807 9vbx:D (2.4) BS03 MN N/A N/A N/A 41786775
    1062808 9vby:A (2.67) BS01 MAN N/A N/A N/A 41786775
    1062809 9vby:A (2.67) BS02 CA N/A N/A N/A 41786775
    1062810 9vby:A (2.67) BS03 MN N/A N/A N/A 41786775
    1062811 9vby:B (2.67) BS01 MAN N/A N/A N/A 41786775
    1062812 9vby:B (2.67) BS02 CA N/A N/A N/A 41786775
    1062813 9vby:B (2.67) BS03 MN N/A N/A N/A 41786775
    1062814 9vby:C (2.67) BS01 MAN N/A N/A N/A 41786775
    1062815 9vby:C (2.67) BS02 CA N/A N/A N/A 41786775
    1062816 9vby:C (2.67) BS03 MN N/A N/A N/A 41786775
    1062817 9vby:D (2.67) BS01 MAN N/A N/A N/A 41786775
    1062818 9vby:D (2.67) BS02 CA N/A N/A N/A 41786775
    1062819 9vby:D (2.67) BS03 MN N/A N/A N/A 41786775
    1062820 9vbz:A (2.56) BS01 MAN N/A N/A N/A 41786775
    1062821 9vbz:A (2.56) BS02 MAN N/A N/A N/A 41786775
    1062822 9vbz:A (2.56) BS03 CA N/A N/A N/A 41786775
    1062823 9vbz:A (2.56) BS04 MN N/A N/A N/A 41786775
    1062824 9vbz:B (2.56) BS01 MAN N/A N/A N/A 41786775
    1062825 9vbz:B (2.56) BS02 MAN N/A N/A N/A 41786775
    1062826 9vbz:B (2.56) BS03 CA N/A N/A N/A 41786775
    1062827 9vbz:B (2.56) BS04 MN N/A N/A N/A 41786775
    1062828 9vbz:C (2.56) BS01 MAN N/A N/A N/A 41786775
    1062829 9vbz:C (2.56) BS02 MAN N/A N/A N/A 41786775
    1062830 9vbz:C (2.56) BS03 CA N/A N/A N/A 41786775
    1062831 9vbz:C (2.56) BS04 MN N/A N/A N/A 41786775
    1062832 9vbz:D (2.56) BS01 MAN N/A N/A N/A 41786775
    1062833 9vbz:D (2.56) BS02 MAN N/A N/A N/A 41786775
    1062834 9vbz:D (2.56) BS03 CA N/A N/A N/A 41786775
    1062835 9vbz:D (2.56) BS04 MN N/A N/A N/A 41786775
    1062836 9vc0:A (2.48) BS01 MAN N/A N/A N/A 41786775
    1062837 9vc0:A (2.48) BS02 CA N/A N/A N/A 41786775
    1062838 9vc0:A (2.48) BS03 MN N/A N/A N/A 41786775
    1062839 9vc0:B (2.48) BS01 MAN N/A N/A N/A 41786775
    1062840 9vc0:B (2.48) BS02 CA N/A N/A N/A 41786775
    1062841 9vc0:B (2.48) BS03 MN N/A N/A N/A 41786775
    1062842 9vc0:C (2.48) BS01 MAN N/A N/A N/A 41786775
    1062843 9vc0:C (2.48) BS02 CA N/A N/A N/A 41786775
    1062844 9vc0:C (2.48) BS03 MN N/A N/A N/A 41786775
    1062845 9vc0:D (2.48) BS01 MAN N/A N/A N/A 41786775
    1062846 9vc0:D (2.48) BS02 CA N/A N/A N/A 41786775
    1062847 9vc0:D (2.48) BS03 MN N/A N/A N/A 41786775
    1062848 9vc7:A (3.35) BS01 ZN N/A N/A Q15326 N/A
    1062849 9vc7:A (3.35) BS02 ZN N/A N/A Q15326 N/A
    1062850 9vc7:B (3.35) BS01 ZN N/A N/A Q15326 N/A
    1062851 9vc7:B (3.35) BS02 ZN N/A N/A Q15326 N/A
    1062852 9vc7:C (3.35) BS01 ZN N/A N/A Q15326 N/A
    1062853 9vc7:C (3.35) BS02 ZN N/A N/A Q15326 N/A
    1062854 9vc7:D (3.35) BS01 ZN N/A N/A Q15326 N/A
    1062855 9vc7:D (3.35) BS02 ZN N/A N/A Q15326 N/A
    1062856 9vcd:A (-1.00) BS01 ZN N/A N/A Q9W3J0 41495890
    1062857 9vcd:B (-1.00) BS01 ZN N/A N/A Q9W3J0 41495890
    1062858 9vce:A (1.82) BS01 A1ERS N/A GO:0000166 ... E2QFN4 40945024
    1062859 9vce:A (1.82) BS02 CLW N/A GO:0000166 ... E2QFN4 40945024
    1062860 9vce:B (1.82) BS01 TYM N/A GO:0000166 ... E2QFN4 40945024
    1062861 9vce:B (1.82) BS02 CLW N/A GO:0000166 ... E2QFN4 40945024
    1062862 9vci:A (1.88) BS01 A1ERR N/A GO:0000166 ... E2QFN4 40945024
    1062863 9vci:A (1.88) BS02 CLW N/A GO:0000166 ... E2QFN4 40945024
    1062864 9vci:B (1.88) BS01 CLW N/A GO:0000166 ... E2QFN4 40945024
    1062865 9vci:B (1.88) BS02 TYM N/A GO:0000166 ... E2QFN4 40945024
    1062866 9vck:A (4.22) BS01 ZN N/A GO:0003723 ... P0DTD1 40509573
    1062867 9vck:A (4.22) BS02 ZN N/A GO:0003723 ... P0DTD1 40509573
    1062868 9vck:B (4.22) BS01 rna N/A GO:0000175 ... P0DTD1 40509573
    1062869 9vck:B (4.22) BS02 rna N/A GO:0000175 ... P0DTD1 40509573
    1062870 9vck:B (4.22) BS03 CA N/A GO:0000175 ... P0DTD1 40509573
    1062871 9vck:B (4.22) BS04 CA N/A GO:0000175 ... P0DTD1 40509573
    1062872 9vck:B (4.22) BS05 ZN N/A GO:0000175 ... P0DTD1 40509573
    1062873 9vck:B (4.22) BS06 ZN N/A GO:0000175 ... P0DTD1 40509573
    1062874 9vck:B (4.22) BS07 ZN N/A GO:0000175 ... P0DTD1 40509573
    1062875 9vcl:A (3.08) BS01 ZN N/A GO:0003723 ... P0DTD1 40509573
    1062876 9vcl:A (3.08) BS02 ZN N/A GO:0003723 ... P0DTD1 40509573
    1062877 9vcl:B (3.08) BS01 rna N/A GO:0000175 ... P0DTD1 40509573
    1062878 9vcl:B (3.08) BS02 rna N/A GO:0000175 ... P0DTD1 40509573
    1062879 9vcl:B (3.08) BS03 CA N/A GO:0000175 ... P0DTD1 40509573
    1062880 9vcl:B (3.08) BS04 CA N/A GO:0000175 ... P0DTD1 40509573
    1062881 9vcl:B (3.08) BS05 ZN N/A GO:0000175 ... P0DTD1 40509573
    1062882 9vcl:B (3.08) BS06 ZN N/A GO:0000175 ... P0DTD1 40509573
    1062883 9vcl:B (3.08) BS07 ZN N/A GO:0000175 ... P0DTD1 40509573
    1062884 9vcl:B (3.08) BS08 EIF N/A GO:0000175 ... P0DTD1 40509573
    1062885 9vd2:A (1.699) BS01 A1L99 N/A N/A Q14145 N/A
    1062886 9vd8:A (2.39) BS01 GLC N/A GO:0004553 ... A0ABD7ANA7 40846838
    1062887 9vd9:1 (4.6) BS01 rna N/A GO:0000287 ... P24928 40617815
    1062888 9vd9:1 (4.6) BS02 dna N/A GO:0000287 ... P24928 40617815
    1062889 9vd9:1 (4.6) BS03 dna N/A GO:0000287 ... P24928 40617815
    1062890 9vd9:1 (4.6) BS04 MG N/A GO:0000287 ... P24928 40617815
    1062891 9vd9:1 (4.6) BS05 ZN N/A GO:0000287 ... P24928 40617815
    1062892 9vd9:2 (4.6) BS01 rna N/A GO:0000781 ... I3LGP4 40617815
    1062893 9vd9:2 (4.6) BS02 dna N/A GO:0000781 ... I3LGP4 40617815
    1062894 9vd9:2 (4.6) BS03 ZN N/A GO:0000781 ... I3LGP4 40617815
    1062895 9vd9:3 (4.6) BS01 ZN N/A GO:0003677 ... P19387 40617815
    1062896 9vd9:4 (4.6) BS01 dna N/A GO:0003677 ... P19388 40617815
    1062897 9vd9:7 (4.6) BS01 ZN N/A GO:0001193 ... P36954 40617815
    1062898 9vd9:7 (4.6) BS02 ZN N/A GO:0001193 ... P36954 40617815
    1062899 9vd9:8 (4.6) BS01 ZN N/A GO:0003677 ... P62875 40617815
    1062900 9vd9:B (4.6) BS01 peptide N/A GO:0005515 ... Q9H0H0 40617815
    1062901 9vd9:B (4.6) BS02 peptide N/A GO:0005515 ... Q9H0H0 40617815
    1062902 9vd9:F (4.6) BS01 peptide N/A GO:0000785 ... Q9UL03 40617815
    1062903 9vd9:G (4.6) BS01 peptide N/A GO:0000077 ... Q9NVH2 40617815
    1062904 9vd9:I (4.6) BS01 peptide N/A GO:0005515 ... Q9NV88 40617815
    1062905 9vd9:K (4.6) BS01 rna N/A GO:0004521 ... Q5TA45 40617815
    1062906 9vd9:K (4.6) BS02 ZN N/A GO:0004521 ... Q5TA45 40617815
    1062907 9vd9:K (4.6) BS03 ZN N/A GO:0004521 ... Q5TA45 40617815
    1062908 9vd9:Q (4.6) BS01 peptide N/A GO:0000159 ... P67775 40617815
    1062909 9vd9:Q (4.6) BS02 MN N/A GO:0000159 ... P67775 40617815
    1062910 9vd9:Q (4.6) BS03 MN N/A GO:0000159 ... P67775 40617815
    1062911 9vd9:a (4.6) BS01 ZN N/A GO:0001650 ... P53803 40617815
    1062912 9vd9:j (4.6) BS01 dna N/A GO:0000122 ... O00267 40617815
    1062913 9vdc:A (3.4) BS01 ASP N/A GO:0016020 ... Q8L3K8 N/A
    1062914 9vdc:B (3.4) BS01 ASP N/A GO:0016020 ... Q8L3K8 N/A
    1062915 9vdj:A (2.3) BS01 CU N/A N/A Q5SJ79 N/A
    1062916 9vdj:A (2.3) BS02 HEM N/A N/A Q5SJ79 N/A
    1062917 9vdj:A (2.3) BS03 HAS N/A N/A Q5SJ79 N/A
    1062918 9vdj:B (2.3) BS01 CUA N/A N/A Q5SJ80 N/A
    1062919 9vdk:A (2.18) BS01 MG N/A GO:0000166 ... O75110 40876594
    1062920 9vdk:A (2.18) BS02 P5S N/A GO:0000166 ... O75110 40876594
    1062921 9vdk:A (2.18) BS03 CLR N/A GO:0000166 ... O75110 40876594
    1062922 9vdl:A (2.31) BS01 MG N/A GO:0000166 ... O75110 40876594
    1062923 9vdm:A (3.01) BS01 MG N/A GO:0000166 ... O75110 40876594
    1062924 9vdm:A (3.01) BS02 P5S N/A GO:0000166 ... O75110 40876594
    1062925 9vdn:A (2.61) BS01 MG N/A GO:0000166 ... O75110 40876594
    1062926 9vdn:A (2.61) BS02 P5S N/A GO:0000166 ... O75110 40876594
    1062927 9vdn:A (2.61) BS03 CLR N/A GO:0000166 ... O75110 40876594
    1062928 9vdn:A (2.61) BS04 ALF N/A GO:0000166 ... O75110 40876594
    1062929 9vdo:A (2.93) BS01 dna N/A N/A A0A628R156 41330908
    1062930 9vdo:A (2.93) BS02 DCP N/A N/A A0A628R156 41330908
    1062931 9vdo:A (2.93) BS03 MN N/A N/A A0A628R156 41330908
    1062932 9vdo:A (2.93) BS04 MN N/A N/A A0A628R156 41330908
    1062933 9vdo:B (2.93) BS01 dna N/A N/A A0A628R156 41330908
    1062934 9vdo:B (2.93) BS02 DCP N/A N/A A0A628R156 41330908
    1062935 9vdo:B (2.93) BS03 MN N/A N/A A0A628R156 41330908
    1062936 9vdo:B (2.93) BS04 MN N/A N/A A0A628R156 41330908
    1062937 9vdo:D (2.93) BS01 dna N/A N/A A0A628R156 41330908
    1062938 9vdo:D (2.93) BS02 DCP N/A N/A A0A628R156 41330908
    1062939 9vdo:D (2.93) BS03 MN N/A N/A A0A628R156 41330908
    1062940 9vdo:D (2.93) BS04 MN N/A N/A A0A628R156 41330908
    1062941 9vdo:F (2.93) BS01 dna N/A N/A A0A628R156 41330908
    1062942 9vdo:F (2.93) BS02 DCP N/A N/A A0A628R156 41330908
    1062943 9vdo:F (2.93) BS03 MN N/A N/A A0A628R156 41330908
    1062944 9vdo:F (2.93) BS04 MN N/A N/A A0A628R156 41330908
    1062945 9vdo:H (2.93) BS01 dna N/A N/A A0A628R156 41330908
    1062946 9vdo:H (2.93) BS02 DCP N/A N/A A0A628R156 41330908
    1062947 9vdo:H (2.93) BS03 MN N/A N/A A0A628R156 41330908
    1062948 9vdo:H (2.93) BS04 MN N/A N/A A0A628R156 41330908
    1062949 9vdo:K (2.93) BS01 dna N/A N/A A0A628R156 41330908
    1062950 9vdo:K (2.93) BS02 DCP N/A N/A A0A628R156 41330908
    1062951 9vdo:K (2.93) BS03 MN N/A N/A A0A628R156 41330908
    1062952 9vdo:K (2.93) BS04 MN N/A N/A A0A628R156 41330908
    1062953 9vdp:A (2.27) BS01 dna N/A N/A A0A628R156 41330908
    1062954 9vdp:B (2.27) BS01 dna N/A N/A A0A628R156 41330908
    1062955 9vdp:D (2.27) BS01 dna N/A N/A A0A628R156 41330908
    1062956 9vdp:F (2.27) BS01 dna N/A N/A A0A628R156 41330908
    1062957 9vdp:H (2.27) BS01 dna N/A N/A A0A628R156 41330908
    1062958 9vdp:K (2.27) BS01 dna N/A N/A A0A628R156 41330908
    1062959 9vdx:C (2.8) BS01 HEC N/A N/A P07173 N/A
    1062960 9vdx:C (2.8) BS02 HEC N/A N/A P07173 N/A
    1062961 9vdx:C (2.8) BS03 HEC N/A N/A P07173 N/A
    1062962 9vdx:C (2.8) BS04 HEC N/A N/A P07173 N/A
    1062963 9vdx:L (2.8) BS01 BCB N/A N/A P06009 N/A
    1062964 9vdx:L (2.8) BS02 BCB N/A N/A P06009 N/A
    1062965 9vdx:L (2.8) BS03 BPB N/A N/A P06009 N/A
    1062966 9vdx:L (2.8) BS04 FE2 N/A N/A P06009 N/A
    1062967 9vdx:L (2.8) BS05 BCB N/A N/A P06009 N/A
    1062968 9vdx:L (2.8) BS06 BPB N/A N/A P06009 N/A
    1062969 9vdx:M (2.8) BS01 BCB N/A N/A P06010 N/A
    1062970 9vdx:M (2.8) BS02 BPB N/A N/A P06010 N/A
    1062971 9vdx:M (2.8) BS03 FE2 N/A N/A P06010 N/A
    1062972 9vdx:M (2.8) BS04 MQ7 N/A N/A P06010 N/A
    1062973 9vdx:M (2.8) BS05 BCB N/A N/A P06010 N/A
    1062974 9vdx:M (2.8) BS06 BCB N/A N/A P06010 N/A
    1062975 9vdx:M (2.8) BS07 BPB N/A N/A P06010 N/A
    1062976 9vdx:M (2.8) BS08 NS5 N/A N/A P06010 N/A
    1062977 9vec:A (2.7) BS01 peptide N/A GO:0005216 ... P51787 40745202
    1062978 9vec:A (2.7) BS02 peptide N/A GO:0005216 ... P51787 40745202
    1062979 9vec:A (2.7) BS03 peptide N/A GO:0005216 ... P51787 40745202
    1062980 9vec:B (2.7) BS01 CA N/A GO:0000922 ... P0DP23 40745202
    1062981 9vec:B (2.7) BS02 CA N/A GO:0000922 ... P0DP23 40745202
    1062982 9vec:D (2.7) BS01 peptide N/A GO:0005216 ... P51787 40745202
    1062983 9vec:D (2.7) BS02 peptide N/A GO:0005216 ... P51787 40745202
    1062984 9vec:D (2.7) BS03 peptide N/A GO:0005216 ... P51787 40745202
    1062985 9vec:E (2.7) BS01 CA N/A GO:0000922 ... P0DP23 40745202
    1062986 9vec:E (2.7) BS02 CA N/A GO:0000922 ... P0DP23 40745202
    1062987 9vec:G (2.7) BS01 peptide N/A GO:0005216 ... P51787 40745202
    1062988 9vec:G (2.7) BS02 peptide N/A GO:0005216 ... P51787 40745202
    1062989 9vec:G (2.7) BS03 peptide N/A GO:0005216 ... P51787 40745202
    1062990 9vec:H (2.7) BS01 CA N/A GO:0000922 ... P0DP23 40745202
    1062991 9vec:H (2.7) BS02 CA N/A GO:0000922 ... P0DP23 40745202
    1062992 9vec:J (2.7) BS01 peptide N/A GO:0005216 ... P51787 40745202
    1062993 9vec:J (2.7) BS02 peptide N/A GO:0005216 ... P51787 40745202
    1062994 9vec:J (2.7) BS03 peptide N/A GO:0005216 ... P51787 40745202
    1062995 9vec:K (2.7) BS01 CA N/A GO:0000922 ... P0DP23 40745202
    1062996 9vec:K (2.7) BS02 CA N/A GO:0000922 ... P0DP23 40745202
    1062997 9vei:A (3.9) BS01 PT5 N/A GO:0005216 ... P51787 40745202
    1062998 9vei:A (3.9) BS02 PT5 N/A GO:0005216 ... P51787 40745202
    1062999 9vei:B (3.9) BS01 CA N/A GO:0000922 ... P0DP23 40745202
    1063000 9vei:B (3.9) BS02 CA N/A GO:0000922 ... P0DP23 40745202

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).