SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1063401 9vhl:B (2.6) BS04 ATP N/A GO:0000731 ... P0DV91 41277685
    1063402 9vhl:C (2.6) BS01 dna N/A GO:0000731 ... P0DV91 41277685
    1063403 9vhl:C (2.6) BS02 ATP N/A GO:0000731 ... P0DV91 41277685
    1063404 9vhl:C (2.6) BS03 ATP N/A GO:0000731 ... P0DV91 41277685
    1063405 9vhl:D (2.6) BS01 dna N/A GO:0000731 ... P0DV91 41277685
    1063406 9vhl:D (2.6) BS02 ATP N/A GO:0000731 ... P0DV91 41277685
    1063407 9vhl:E (2.6) BS01 dna N/A GO:0000731 ... P0DV91 41277685
    1063408 9vhl:E (2.6) BS02 ATP N/A GO:0000731 ... P0DV91 41277685
    1063409 9vi9:A (3.02) BS01 peptide N/A N/A Q9GZQ6 41206054
    1063410 9vib:A (2.26) BS01 HEM N/A GO:0004601 ... P69905 N/A
    1063411 9vib:B (2.26) BS01 HEM N/A GO:0004601 ... P68871 N/A
    1063412 9vic:A (2.45) BS01 HEM N/A GO:0004601 ... P69905 N/A
    1063413 9vic:B (2.45) BS01 HEM N/A GO:0004601 ... P68871 N/A
    1063414 9vid:A (2.22) BS01 HEM N/A GO:0004601 ... P01999 N/A
    1063415 9vid:B (2.22) BS01 HEM N/A GO:0004601 ... P02130 N/A
    1063416 9vie:A (2.38) BS01 HEM N/A GO:0004601 ... P01999 N/A
    1063417 9vie:B (2.38) BS01 HEM N/A GO:0004601 ... P02130 N/A
    1063418 9vif:A (3.19) BS01 peptide N/A N/A Q9GZQ6 41206054
    1063419 9viq:A (3.24) BS01 NCT N/A GO:0004888 ... P36544 41071887
    1063420 9viq:A (3.24) BS02 NCT N/A GO:0004888 ... P36544 41071887
    1063421 9viq:B (3.24) BS01 NCT N/A GO:0004888 ... P36544 41071887
    1063422 9viq:B (3.24) BS02 NCT N/A GO:0004888 ... P36544 41071887
    1063423 9viq:C (3.24) BS01 NCT N/A GO:0004888 ... P36544 41071887
    1063424 9viq:C (3.24) BS02 NCT N/A GO:0004888 ... P36544 41071887
    1063425 9viq:D (3.24) BS01 NCT N/A GO:0004888 ... P36544 41071887
    1063426 9viq:D (3.24) BS02 NCT N/A GO:0004888 ... P36544 41071887
    1063427 9viq:E (3.24) BS01 NCT N/A GO:0004888 ... P36544 41071887
    1063428 9viq:E (3.24) BS02 NCT N/A GO:0004888 ... P36544 41071887
    1063429 9vis:A (1.85) BS01 A1ER6 N/A GO:0000166 ... B2UM52 40976292
    1063430 9vit:A (2.4) BS01 GTP N/A GO:0000166 ... B2UM52 40976292
    1063431 9vit:B (2.4) BS01 3PO N/A GO:0000166 ... B2UM52 40976292
    1063432 9vit:C (2.4) BS01 GTP N/A GO:0000166 ... B2UM52 40976292
    1063433 9vix:A (3.06) BS01 NCT N/A GO:0004888 ... P36544 41071887
    1063434 9vix:A (3.06) BS02 NCT N/A GO:0004888 ... P36544 41071887
    1063435 9vix:B (3.06) BS01 NCT N/A GO:0004888 ... P36544 41071887
    1063436 9vix:B (3.06) BS02 NCT N/A GO:0004888 ... P36544 41071887
    1063437 9vix:C (3.06) BS01 NCT N/A GO:0004888 ... P36544 41071887
    1063438 9vix:C (3.06) BS02 NCT N/A GO:0004888 ... P36544 41071887
    1063439 9vix:D (3.06) BS01 NCT N/A GO:0004888 ... P36544 41071887
    1063440 9vix:D (3.06) BS02 NCT N/A GO:0004888 ... P36544 41071887
    1063441 9vix:E (3.06) BS01 NCT N/A GO:0004888 ... P36544 41071887
    1063442 9vix:E (3.06) BS02 NCT N/A GO:0004888 ... P36544 41071887
    1063443 9viy:A (3.3) BS01 CLR N/A GO:0000166 ... Q4H132 40956884
    1063444 9viy:A (3.3) BS02 MG N/A GO:0000166 ... Q4H132 40956884
    1063445 9viy:A (3.3) BS03 A1MA6 N/A GO:0000166 ... Q4H132 40956884
    1063446 9viy:A (3.3) BS04 CLR N/A GO:0000166 ... Q4H132 40956884
    1063447 9viy:C (3.3) BS01 CLR N/A GO:0000166 ... Q4H132 40956884
    1063448 9viy:C (3.3) BS02 MG N/A GO:0000166 ... Q4H132 40956884
    1063449 9viy:C (3.3) BS03 A1MA6 N/A GO:0000166 ... Q4H132 40956884
    1063450 9viy:C (3.3) BS04 CLR N/A GO:0000166 ... Q4H132 40956884
    1063451 9viz:A (3.4) BS01 CLR N/A GO:0000166 ... Q4H132 40956884
    1063452 9viz:A (3.4) BS02 ALF N/A GO:0000166 ... Q4H132 40956884
    1063453 9viz:A (3.4) BS03 MG N/A GO:0000166 ... Q4H132 40956884
    1063454 9viz:A (3.4) BS04 A1MA6 N/A GO:0000166 ... Q4H132 40956884
    1063455 9viz:A (3.4) BS05 CLR N/A GO:0000166 ... Q4H132 40956884
    1063456 9viz:B (3.4) BS01 CLR N/A GO:0001671 ... C4IX13 40956884
    1063457 9viz:B (3.4) BS02 CLR N/A GO:0001671 ... C4IX13 40956884
    1063458 9viz:C (3.4) BS01 CLR N/A GO:0000166 ... Q4H132 40956884
    1063459 9viz:C (3.4) BS02 ALF N/A GO:0000166 ... Q4H132 40956884
    1063460 9viz:C (3.4) BS03 MG N/A GO:0000166 ... Q4H132 40956884
    1063461 9viz:C (3.4) BS04 A1MA6 N/A GO:0000166 ... Q4H132 40956884
    1063462 9viz:C (3.4) BS05 CLR N/A GO:0000166 ... Q4H132 40956884
    1063463 9viz:D (3.4) BS01 CLR N/A GO:0001671 ... C4IX13 40956884
    1063464 9viz:D (3.4) BS02 CLR N/A GO:0001671 ... C4IX13 40956884
    1063465 9vj0:A (3.7) BS01 CLR N/A GO:0000166 ... Q4H132 40956884
    1063466 9vj0:A (3.7) BS02 CLR N/A GO:0000166 ... Q4H132 40956884
    1063467 9vj0:A (3.7) BS03 CLR N/A GO:0000166 ... Q4H132 40956884
    1063468 9vj0:A (3.7) BS04 ATP N/A GO:0000166 ... Q4H132 40956884
    1063469 9vj0:A (3.7) BS05 A1MA6 N/A GO:0000166 ... Q4H132 40956884
    1063470 9vj0:B (3.7) BS01 CLR N/A GO:0001671 ... C4IX13 40956884
    1063471 9vj0:B (3.7) BS02 CLR N/A GO:0001671 ... C4IX13 40956884
    1063472 9vj0:C (3.7) BS01 CLR N/A GO:0000166 ... Q4H132 40956884
    1063473 9vj0:C (3.7) BS02 CLR N/A GO:0000166 ... Q4H132 40956884
    1063474 9vj0:C (3.7) BS03 CLR N/A GO:0000166 ... Q4H132 40956884
    1063475 9vj0:C (3.7) BS04 ATP N/A GO:0000166 ... Q4H132 40956884
    1063476 9vj0:C (3.7) BS05 A1MA6 N/A GO:0000166 ... Q4H132 40956884
    1063477 9vj0:D (3.7) BS01 CLR N/A GO:0001671 ... C4IX13 40956884
    1063478 9vj0:D (3.7) BS02 CLR N/A GO:0001671 ... C4IX13 40956884
    1063479 9vj1:A (3.4) BS01 CLR N/A GO:0000166 ... Q4H132 40956884
    1063480 9vj1:A (3.4) BS02 CLR N/A GO:0000166 ... Q4H132 40956884
    1063481 9vj1:A (3.4) BS03 ADP N/A GO:0000166 ... Q4H132 40956884
    1063482 9vj1:A (3.4) BS04 A1MA6 N/A GO:0000166 ... Q4H132 40956884
    1063483 9vj1:B (3.4) BS01 CLR N/A GO:0001671 ... C4IX13 40956884
    1063484 9vj1:B (3.4) BS02 CLR N/A GO:0001671 ... C4IX13 40956884
    1063485 9vj1:C (3.4) BS01 CLR N/A GO:0000166 ... Q4H132 40956884
    1063486 9vj1:C (3.4) BS02 CLR N/A GO:0000166 ... Q4H132 40956884
    1063487 9vj1:C (3.4) BS03 ADP N/A GO:0000166 ... Q4H132 40956884
    1063488 9vj1:C (3.4) BS04 A1MA6 N/A GO:0000166 ... Q4H132 40956884
    1063489 9vj1:D (3.4) BS01 CLR N/A GO:0001671 ... C4IX13 40956884
    1063490 9vj1:D (3.4) BS02 CLR N/A GO:0001671 ... C4IX13 40956884
    1063491 9vj1:E (3.4) BS01 CLR N/A GO:0016020 ... Q70Q12 40956884
    1063492 9vj1:G (3.4) BS01 CLR N/A GO:0016020 ... Q70Q12 40956884
    1063493 9vj2:A (3.79) BS01 MG N/A GO:0000166 ... D2WKD6 40956884
    1063494 9vj2:A (3.79) BS02 CLR N/A GO:0000166 ... D2WKD6 40956884
    1063495 9vj2:A (3.79) BS03 A1MA6 N/A GO:0000166 ... D2WKD6 40956884
    1063496 9vj2:G (3.79) BS01 CLR N/A GO:0001671 ... Q58K79 40956884
    1063497 9vj4:A (3.5) BS01 UJO N/A N/A P36107 41708645
    1063498 9vj4:A (3.5) BS02 46E N/A N/A P36107 41708645
    1063499 9vj4:B (3.5) BS01 46E N/A N/A Q06346 41708645
    1063500 9vj5:R (2.69) BS01 A1ESA N/A GO:0001586 ... P08908
    P0ABE7
    N/A
    1063501 9vj5:R (2.69) BS02 CLR N/A GO:0001586 ... P08908
    P0ABE7
    N/A
    1063502 9vj5:R (2.69) BS03 CLR N/A GO:0001586 ... P08908
    P0ABE7
    N/A
    1063503 9vj5:R (2.69) BS04 T7M N/A GO:0001586 ... P08908
    P0ABE7
    N/A
    1063504 9vj6:B (2.62) BS01 T7M N/A GO:0000139 ... P08754 N/A
    1063505 9vj6:R (2.62) BS01 A1ESC N/A GO:0001586 ... P08908
    P0ABE7
    N/A
    1063506 9vj6:R (2.62) BS02 CLR N/A GO:0001586 ... P08908
    P0ABE7
    N/A
    1063507 9vj6:R (2.62) BS03 CLR N/A GO:0001586 ... P08908
    P0ABE7
    N/A
    1063508 9vj6:R (2.62) BS04 T7M N/A GO:0001586 ... P08908
    P0ABE7
    N/A
    1063509 9vje:B (2.47) BS01 T7M N/A GO:0003924 ... P09471 N/A
    1063510 9vje:R (2.47) BS01 YLX N/A GO:0001586 ... P08908
    P0ABE7
    N/A
    1063511 9vje:R (2.47) BS02 CLR N/A GO:0001586 ... P08908
    P0ABE7
    N/A
    1063512 9vje:R (2.47) BS03 CLR N/A GO:0001586 ... P08908
    P0ABE7
    N/A
    1063513 9vje:R (2.47) BS04 T7M N/A GO:0001586 ... P08908
    P0ABE7
    N/A
    1063514 9vjf:R (2.7) BS01 CLR N/A GO:0001586 ... P08908
    P0ABE7
    N/A
    1063515 9vjf:R (2.7) BS02 CLR N/A GO:0001586 ... P08908
    P0ABE7
    N/A
    1063516 9vjf:R (2.7) BS03 T7M N/A GO:0001586 ... P08908
    P0ABE7
    N/A
    1063517 9vjf:R (2.7) BS04 YLX N/A GO:0001586 ... P08908
    P0ABE7
    N/A
    1063518 9vjg:B (2.67) BS01 T7M N/A GO:0003924 ... N/A N/A
    1063519 9vjg:R (2.67) BS01 CLR N/A GO:0001586 ... P08908
    P0ABE7
    N/A
    1063520 9vjg:R (2.67) BS02 CLR N/A GO:0001586 ... P08908
    P0ABE7
    N/A
    1063521 9vjg:R (2.67) BS03 T7M N/A GO:0001586 ... P08908
    P0ABE7
    N/A
    1063522 9vjg:R (2.67) BS04 A1ESE N/A GO:0001586 ... P08908
    P0ABE7
    N/A
    1063523 9vjl:A (-1.00) BS01 peptide N/A N/A Q9ES52 41633359
    1063524 9vjm:A (3.28) BS01 A1LVF N/A GO:0004144 ... Q9SLD2 41081525
    1063525 9vjm:B (3.28) BS01 A1LVF N/A GO:0004144 ... Q9SLD2 41081525
    1063526 9vjs:A (2.72) BS01 CLA N/A N/A N/A N/A
    1063527 9vjs:A (2.72) BS02 CLA N/A N/A N/A N/A
    1063528 9vjs:A (2.72) BS03 CLA N/A N/A N/A N/A
    1063529 9vjs:A (2.72) BS04 CLA N/A N/A N/A N/A
    1063530 9vjs:A (2.72) BS05 CLA N/A N/A N/A N/A
    1063531 9vjs:A (2.72) BS06 CLA N/A N/A N/A N/A
    1063532 9vjs:A (2.72) BS07 CLA N/A N/A N/A N/A
    1063533 9vjs:A (2.72) BS08 CLA N/A N/A N/A N/A
    1063534 9vjs:A (2.72) BS09 CLA N/A N/A N/A N/A
    1063535 9vjs:A (2.72) BS10 CLA N/A N/A N/A N/A
    1063536 9vjs:A (2.72) BS11 CLA N/A N/A N/A N/A
    1063537 9vjs:A (2.72) BS12 CLA N/A N/A N/A N/A
    1063538 9vjs:A (2.72) BS13 CLA N/A N/A N/A N/A
    1063539 9vjs:A (2.72) BS14 CLA N/A N/A N/A N/A
    1063540 9vjs:A (2.72) BS15 CLA N/A N/A N/A N/A
    1063541 9vjs:A (2.72) BS16 CLA N/A N/A N/A N/A
    1063542 9vjs:A (2.72) BS17 CLA N/A N/A N/A N/A
    1063543 9vjs:A (2.72) BS18 CLA N/A N/A N/A N/A
    1063544 9vjs:A (2.72) BS19 CLA N/A N/A N/A N/A
    1063545 9vjs:A (2.72) BS20 CLA N/A N/A N/A N/A
    1063546 9vjs:A (2.72) BS21 CLA N/A N/A N/A N/A
    1063547 9vjs:A (2.72) BS22 CLA N/A N/A N/A N/A
    1063548 9vjs:A (2.72) BS23 CLA N/A N/A N/A N/A
    1063549 9vjs:A (2.72) BS24 CLA N/A N/A N/A N/A
    1063550 9vjs:A (2.72) BS25 CLA N/A N/A N/A N/A
    1063551 9vjs:A (2.72) BS26 CLA N/A N/A N/A N/A
    1063552 9vjs:A (2.72) BS27 CLA N/A N/A N/A N/A
    1063553 9vjs:A (2.72) BS28 CLA N/A N/A N/A N/A
    1063554 9vjs:A (2.72) BS29 CLA N/A N/A N/A N/A
    1063555 9vjs:A (2.72) BS30 PQN N/A N/A N/A N/A
    1063556 9vjs:A (2.72) BS31 DD6 N/A N/A N/A N/A
    1063557 9vjs:A (2.72) BS32 CLA N/A N/A N/A N/A
    1063558 9vjs:A (2.72) BS33 CLA N/A N/A N/A N/A
    1063559 9vjs:A (2.72) BS34 CLA N/A N/A N/A N/A
    1063560 9vjs:A (2.72) BS35 CLA N/A N/A N/A N/A
    1063561 9vjs:A (2.72) BS36 CLA N/A N/A N/A N/A
    1063562 9vjs:A (2.72) BS37 CLA N/A N/A N/A N/A
    1063563 9vjs:A (2.72) BS38 CLA N/A N/A N/A N/A
    1063564 9vjs:A (2.72) BS39 CLA N/A N/A N/A N/A
    1063565 9vjs:A (2.72) BS40 CLA N/A N/A N/A N/A
    1063566 9vjs:A (2.72) BS41 CLA N/A N/A N/A N/A
    1063567 9vjs:A (2.72) BS42 CLA N/A N/A N/A N/A
    1063568 9vjs:A (2.72) BS43 CLA N/A N/A N/A N/A
    1063569 9vjs:A (2.72) BS44 CLA N/A N/A N/A N/A
    1063570 9vjs:A (2.72) BS45 CLA N/A N/A N/A N/A
    1063571 9vjs:A (2.72) BS46 SF4 N/A N/A N/A N/A
    1063572 9vjs:A (2.72) BS47 CLA N/A N/A N/A N/A
    1063573 9vjs:A (2.72) BS48 CLA N/A N/A N/A N/A
    1063574 9vjs:A (2.72) BS49 CLA N/A N/A N/A N/A
    1063575 9vjs:A (2.72) BS50 CLA N/A N/A N/A N/A
    1063576 9vjs:A (2.72) BS51 DD6 N/A N/A N/A N/A
    1063577 9vjs:A (2.72) BS52 CLA N/A N/A N/A N/A
    1063578 9vjs:A (2.72) BS53 CLA N/A N/A N/A N/A
    1063579 9vjs:B (2.72) BS01 CLA N/A N/A N/A N/A
    1063580 9vjs:B (2.72) BS02 CLA N/A N/A N/A N/A
    1063581 9vjs:B (2.72) BS03 CLA N/A N/A N/A N/A
    1063582 9vjs:B (2.72) BS04 CLA N/A N/A N/A N/A
    1063583 9vjs:B (2.72) BS05 CLA N/A N/A N/A N/A
    1063584 9vjs:B (2.72) BS06 SF4 N/A N/A N/A N/A
    1063585 9vjs:B (2.72) BS07 CLA N/A N/A N/A N/A
    1063586 9vjs:B (2.72) BS08 CLA N/A N/A N/A N/A
    1063587 9vjs:B (2.72) BS09 CLA N/A N/A N/A N/A
    1063588 9vjs:B (2.72) BS10 CLA N/A N/A N/A N/A
    1063589 9vjs:B (2.72) BS11 CLA N/A N/A N/A N/A
    1063590 9vjs:B (2.72) BS12 CLA N/A N/A N/A N/A
    1063591 9vjs:B (2.72) BS13 CLA N/A N/A N/A N/A
    1063592 9vjs:B (2.72) BS14 CLA N/A N/A N/A N/A
    1063593 9vjs:B (2.72) BS15 CLA N/A N/A N/A N/A
    1063594 9vjs:B (2.72) BS16 CLA N/A N/A N/A N/A
    1063595 9vjs:B (2.72) BS17 CLA N/A N/A N/A N/A
    1063596 9vjs:B (2.72) BS18 CLA N/A N/A N/A N/A
    1063597 9vjs:B (2.72) BS19 CLA N/A N/A N/A N/A
    1063598 9vjs:B (2.72) BS20 CLA N/A N/A N/A N/A
    1063599 9vjs:B (2.72) BS21 CLA N/A N/A N/A N/A
    1063600 9vjs:B (2.72) BS22 CLA N/A N/A N/A N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).