SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1063801 9vjs:k (2.72) BS02 CLA N/A N/A N/A N/A
    1063802 9vjs:k (2.72) BS03 CLA N/A N/A N/A N/A
    1063803 9vjs:k (2.72) BS04 CLA N/A N/A N/A N/A
    1063804 9vjs:k (2.72) BS05 CLA N/A N/A N/A N/A
    1063805 9vjs:k (2.72) BS06 CLA N/A N/A N/A N/A
    1063806 9vjs:k (2.72) BS07 CLA N/A N/A N/A N/A
    1063807 9vjs:k (2.72) BS08 CLA N/A N/A N/A N/A
    1063808 9vjs:k (2.72) BS09 CLA N/A N/A N/A N/A
    1063809 9vjs:k (2.72) BS10 CLA N/A N/A N/A N/A
    1063810 9vjs:k (2.72) BS11 DD6 N/A N/A N/A N/A
    1063811 9vjs:k (2.72) BS12 DD6 N/A N/A N/A N/A
    1063812 9vjs:l (2.72) BS01 CLA N/A N/A N/A N/A
    1063813 9vjs:l (2.72) BS02 CLA N/A N/A N/A N/A
    1063814 9vjs:l (2.72) BS03 CLA N/A N/A N/A N/A
    1063815 9vjs:l (2.72) BS04 CLA N/A N/A N/A N/A
    1063816 9vjs:l (2.72) BS05 CLA N/A N/A N/A N/A
    1063817 9vjs:l (2.72) BS06 CLA N/A N/A N/A N/A
    1063818 9vjs:l (2.72) BS07 CLA N/A N/A N/A N/A
    1063819 9vjs:l (2.72) BS08 CLA N/A N/A N/A N/A
    1063820 9vjs:l (2.72) BS09 CLA N/A N/A N/A N/A
    1063821 9vjs:l (2.72) BS10 DD6 N/A N/A N/A N/A
    1063822 9vjs:l (2.72) BS11 DD6 N/A N/A N/A N/A
    1063823 9vjs:m (2.72) BS01 CLA N/A N/A N/A N/A
    1063824 9vjs:m (2.72) BS02 CHL N/A N/A N/A N/A
    1063825 9vjs:m (2.72) BS03 CLA N/A N/A N/A N/A
    1063826 9vjs:m (2.72) BS04 CLA N/A N/A N/A N/A
    1063827 9vjs:m (2.72) BS05 CLA N/A N/A N/A N/A
    1063828 9vjs:m (2.72) BS06 CLA N/A N/A N/A N/A
    1063829 9vjs:m (2.72) BS07 CLA N/A N/A N/A N/A
    1063830 9vjs:m (2.72) BS08 CLA N/A N/A N/A N/A
    1063831 9vjs:m (2.72) BS09 CLA N/A N/A N/A N/A
    1063832 9vjs:m (2.72) BS10 CLA N/A N/A N/A N/A
    1063833 9vjs:m (2.72) BS11 CLA N/A N/A N/A N/A
    1063834 9vjs:m (2.72) BS12 CLA N/A N/A N/A N/A
    1063835 9vjs:m (2.72) BS13 DD6 N/A N/A N/A N/A
    1063836 9vjs:m (2.72) BS14 DD6 N/A N/A N/A N/A
    1063837 9vjs:n (2.72) BS01 CLA N/A N/A N/A N/A
    1063838 9vjs:n (2.72) BS02 CLA N/A N/A N/A N/A
    1063839 9vjs:n (2.72) BS03 CLA N/A N/A N/A N/A
    1063840 9vjs:n (2.72) BS04 CLA N/A N/A N/A N/A
    1063841 9vjs:n (2.72) BS05 CLA N/A N/A N/A N/A
    1063842 9vjs:n (2.72) BS06 CLA N/A N/A N/A N/A
    1063843 9vjs:n (2.72) BS07 CLA N/A N/A N/A N/A
    1063844 9vjs:n (2.72) BS08 CLA N/A N/A N/A N/A
    1063845 9vjs:n (2.72) BS09 DD6 N/A N/A N/A N/A
    1063846 9vjs:n (2.72) BS10 DD6 N/A N/A N/A N/A
    1063847 9vjs:o (2.72) BS01 CLA N/A N/A N/A N/A
    1063848 9vjs:o (2.72) BS02 CHL N/A N/A N/A N/A
    1063849 9vjs:o (2.72) BS03 CLA N/A N/A N/A N/A
    1063850 9vjs:o (2.72) BS04 CLA N/A N/A N/A N/A
    1063851 9vjs:o (2.72) BS05 CLA N/A N/A N/A N/A
    1063852 9vjs:o (2.72) BS06 CLA N/A N/A N/A N/A
    1063853 9vjs:o (2.72) BS07 CLA N/A N/A N/A N/A
    1063854 9vjs:o (2.72) BS08 CLA N/A N/A N/A N/A
    1063855 9vjs:o (2.72) BS09 CLA N/A N/A N/A N/A
    1063856 9vjs:o (2.72) BS10 CLA N/A N/A N/A N/A
    1063857 9vjs:o (2.72) BS11 CLA N/A N/A N/A N/A
    1063858 9vjs:o (2.72) BS12 CLA N/A N/A N/A N/A
    1063859 9vjs:o (2.72) BS13 CLA N/A N/A N/A N/A
    1063860 9vjs:o (2.72) BS14 DD6 N/A N/A N/A N/A
    1063861 9vjs:o (2.72) BS15 DD6 N/A N/A N/A N/A
    1063862 9vjx:A (2.6) BS01 COA N/A GO:0004144 ... Q9SLD2 41081525
    1063863 9vjx:A (2.6) BS02 3VV N/A GO:0004144 ... Q9SLD2 41081525
    1063864 9vjx:A (2.6) BS03 A1EW5 N/A GO:0004144 ... Q9SLD2 41081525
    1063865 9vjx:A (2.6) BS04 A1EW5 N/A GO:0004144 ... Q9SLD2 41081525
    1063866 9vjx:B (2.6) BS01 COA N/A GO:0004144 ... Q9SLD2 41081525
    1063867 9vjx:B (2.6) BS02 A1LVF N/A GO:0004144 ... Q9SLD2 41081525
    1063868 9vjx:B (2.6) BS03 A1EW5 N/A GO:0004144 ... Q9SLD2 41081525
    1063869 9vjx:B (2.6) BS04 3VV N/A GO:0004144 ... Q9SLD2 41081525
    1063870 9vk0:A (3.01) BS01 A1LVF N/A GO:0004144 ... Q9SLD2 41081525
    1063871 9vk0:B (3.01) BS01 A1LVF N/A GO:0004144 ... Q9SLD2 41081525
    1063872 9vk1:A (3.54) BS01 3VV N/A GO:0004144 ... Q9SLD2 41081525
    1063873 9vk1:B (3.54) BS01 3VV N/A GO:0004144 ... Q9SLD2 41081525
    1063874 9vkg:A (2.39) BS01 ALF N/A GO:0005515 ... Q8NB49 41237907
    1063875 9vkg:A (2.39) BS02 MG N/A GO:0005515 ... Q8NB49 41237907
    1063876 9vkn:A (2.44) BS01 S2G N/A N/A A0A6N0JVZ6 41202821
    1063877 9vkn:A (2.44) BS02 ZN N/A N/A A0A6N0JVZ6 41202821
    1063878 9vkn:B (2.44) BS01 S2G N/A N/A A0A6N0JVZ6 41202821
    1063879 9vkn:B (2.44) BS02 ZN N/A N/A A0A6N0JVZ6 41202821
    1063880 9vkp:A (2.94) BS01 ADP N/A GO:0005524 ... B1MLW0 41475343
    1063881 9vkp:A (2.94) BS02 ATP N/A GO:0005524 ... B1MLW0 41475343
    1063882 9vkp:B (2.94) BS01 ATP N/A GO:0005524 ... B1MLW0 41475343
    1063883 9vkp:C (2.94) BS01 ATP N/A GO:0005524 ... B1MLW0 41475343
    1063884 9vkp:D (2.94) BS01 ADP N/A GO:0005524 ... B1MLW2 41475343
    1063885 9vkp:E (2.94) BS01 ADP N/A GO:0005524 ... B1MLW2 41475343
    1063886 9vkp:F (2.94) BS01 ATP N/A GO:0005524 ... B1MLW2 41475343
    1063887 9vkq:A (3.41) BS01 ATP N/A GO:0005524 ... B1MLW0 41475343
    1063888 9vkq:A (3.41) BS02 ADP N/A GO:0005524 ... B1MLW0 41475343
    1063889 9vkq:B (3.41) BS01 ADP N/A GO:0005524 ... B1MLW0 41475343
    1063890 9vkq:B (3.41) BS02 ATP N/A GO:0005524 ... B1MLW0 41475343
    1063891 9vkq:C (3.41) BS01 ATP N/A GO:0005524 ... B1MLW0 41475343
    1063892 9vkq:D (3.41) BS01 ATP N/A GO:0005524 ... B1MLW2 41475343
    1063893 9vkq:E (3.41) BS01 ADP N/A GO:0005524 ... B1MLW2 41475343
    1063894 9vkq:F (3.41) BS01 ADP N/A GO:0005524 ... B1MLW2 41475343
    1063895 9vkr:A (2.79) BS01 ATP N/A GO:0005524 ... B1MLW0 41475343
    1063896 9vkr:B (2.79) BS01 ATP N/A GO:0005524 ... B1MLW0 41475343
    1063897 9vkr:C (2.79) BS01 ATP N/A GO:0005524 ... B1MLW0 41475343
    1063898 9vkr:D (2.79) BS01 ADP N/A GO:0005524 ... B1MLW2 41475343
    1063899 9vkr:E (2.79) BS01 ATP N/A GO:0005524 ... B1MLW2 41475343
    1063900 9vkr:F (2.79) BS01 ADP N/A GO:0005524 ... B1MLW2 41475343
    1063901 9vku:A (3.49) BS01 rna N/A N/A A0A6D0I497 40836036
    1063902 9vku:A (3.49) BS02 rna N/A N/A A0A6D0I497 40836036
    1063903 9vku:B (3.49) BS01 rna N/A N/A A0A6D0I497 40836036
    1063904 9vku:B (3.49) BS02 rna N/A N/A A0A6D0I497 40836036
    1063905 9vku:C (3.49) BS01 rna N/A N/A A0A6D0I497 40836036
    1063906 9vku:C (3.49) BS02 rna N/A N/A A0A6D0I497 40836036
    1063907 9vku:D (3.49) BS01 rna N/A N/A A0A6D0I497 40836036
    1063908 9vku:D (3.49) BS02 rna N/A N/A A0A6D0I497 40836036
    1063909 9vkw:A (3.13) BS01 ZN N/A GO:0000781 ... P34218 N/A
    1063910 9vkw:A (3.13) BS02 ACO N/A GO:0000781 ... P34218 N/A
    1063911 9vkw:B (3.13) BS01 ZN N/A GO:0005634 ... Q12311 N/A
    1063912 9vkw:B (3.13) BS02 ZN N/A GO:0005634 ... Q12311 N/A
    1063913 9vl0:A (1.6) BS01 HEM N/A GO:0004497 ... P18326 40965121
    1063914 9vl3:A (2.82) BS01 LBN N/A GO:0000810 ... O14494 41513850
    1063915 9vl3:A (2.82) BS02 PT5 N/A GO:0000810 ... O14494 41513850
    1063916 9vl3:A (2.82) BS03 PO4 N/A GO:0000810 ... O14494 41513850
    1063917 9vl3:A (2.82) BS04 LBN N/A GO:0000810 ... O14494 41513850
    1063918 9vl3:A (2.82) BS05 PT5 N/A GO:0000810 ... O14494 41513850
    1063919 9vl3:B (2.82) BS01 PT5 N/A GO:0000810 ... O14494 41513850
    1063920 9vl3:B (2.82) BS02 LBN N/A GO:0000810 ... O14494 41513850
    1063921 9vl3:B (2.82) BS03 PT5 N/A GO:0000810 ... O14494 41513850
    1063922 9vl3:B (2.82) BS04 PO4 N/A GO:0000810 ... O14494 41513850
    1063923 9vl3:B (2.82) BS05 LBN N/A GO:0000810 ... O14494 41513850
    1063924 9vl3:C (2.82) BS01 PT5 N/A GO:0000810 ... O14494 41513850
    1063925 9vl3:C (2.82) BS02 LBN N/A GO:0000810 ... O14494 41513850
    1063926 9vl3:C (2.82) BS03 PT5 N/A GO:0000810 ... O14494 41513850
    1063927 9vl3:C (2.82) BS04 PO4 N/A GO:0000810 ... O14494 41513850
    1063928 9vl3:C (2.82) BS05 LBN N/A GO:0000810 ... O14494 41513850
    1063929 9vl3:D (2.82) BS01 LBN N/A GO:0000810 ... O14494 41513850
    1063930 9vl3:D (2.82) BS02 PT5 N/A GO:0000810 ... O14494 41513850
    1063931 9vl3:D (2.82) BS03 LBN N/A GO:0000810 ... O14494 41513850
    1063932 9vl3:D (2.82) BS04 PT5 N/A GO:0000810 ... O14494 41513850
    1063933 9vl3:D (2.82) BS05 PO4 N/A GO:0000810 ... O14494 41513850
    1063934 9vla:A (2.16) BS01 peptide N/A N/A N/A N/A
    1063935 9vla:A (2.16) BS02 FUL N/A N/A N/A N/A
    1063936 9vla:B (2.16) BS01 peptide N/A N/A N/A N/A
    1063937 9vla:B (2.16) BS02 BMA N/A N/A N/A N/A
    1063938 9vla:B (2.16) BS03 MAN N/A N/A N/A N/A
    1063939 9vlb:A (3.1) BS01 GDP N/A N/A Q2F5M5 41268670
    1063940 9vlb:B (3.1) BS01 GDP N/A N/A Q2F5M5 41268670
    1063941 9vlf:B (1.61) BS01 AMP N/A GO:0002055 ... Q8RDM9 41588988
    1063942 9vlg:A (3.01) BS01 BMA N/A N/A P54289 41439594
    1063943 9vlg:A (3.01) BS02 A1ESQ N/A N/A P54289 41439594
    1063944 9vlq:A (3.4) BS01 dna N/A GO:0000166 ... P10189 41372195
    1063945 9vlq:A (3.4) BS02 ADP N/A GO:0000166 ... P10189 41372195
    1063946 9vm1:A (2.45) BS01 GTP N/A GO:0000054 ... P62826 33883894
    1063947 9vm1:A (2.45) BS02 MG N/A GO:0000054 ... P62826 33883894
    1063948 9vm1:C (2.45) BS01 peptide N/A GO:0000055 ... P30822 33883894
    1063949 9vma:A (3.46) BS01 rna N/A N/A A0A6D0I497 40836036
    1063950 9vma:A (3.46) BS02 rna N/A N/A A0A6D0I497 40836036
    1063951 9vma:A (3.46) BS03 dna N/A N/A A0A6D0I497 40836036
    1063952 9vma:A (3.46) BS04 DTP N/A N/A A0A6D0I497 40836036
    1063953 9vma:A (3.46) BS05 MG N/A N/A A0A6D0I497 40836036
    1063954 9vma:B (3.46) BS01 rna N/A N/A A0A6D0I497 40836036
    1063955 9vma:B (3.46) BS02 rna N/A N/A A0A6D0I497 40836036
    1063956 9vma:B (3.46) BS03 dna N/A N/A A0A6D0I497 40836036
    1063957 9vma:B (3.46) BS04 DTP N/A N/A A0A6D0I497 40836036
    1063958 9vma:B (3.46) BS05 MG N/A N/A A0A6D0I497 40836036
    1063959 9vma:C (3.46) BS01 rna N/A N/A A0A6D0I497 40836036
    1063960 9vma:C (3.46) BS02 rna N/A N/A A0A6D0I497 40836036
    1063961 9vma:C (3.46) BS03 dna N/A N/A A0A6D0I497 40836036
    1063962 9vma:C (3.46) BS04 DTP N/A N/A A0A6D0I497 40836036
    1063963 9vma:C (3.46) BS05 MG N/A N/A A0A6D0I497 40836036
    1063964 9vma:D (3.46) BS01 rna N/A N/A A0A6D0I497 40836036
    1063965 9vma:D (3.46) BS02 rna N/A N/A A0A6D0I497 40836036
    1063966 9vma:D (3.46) BS03 dna N/A N/A A0A6D0I497 40836036
    1063967 9vma:D (3.46) BS04 DTP N/A N/A A0A6D0I497 40836036
    1063968 9vma:D (3.46) BS05 MG N/A N/A A0A6D0I497 40836036
    1063969 9vma:E (3.46) BS01 rna N/A N/A A0A6D0I497 40836036
    1063970 9vma:E (3.46) BS02 dna N/A N/A A0A6D0I497 40836036
    1063971 9vma:E (3.46) BS03 DTP N/A N/A A0A6D0I497 40836036
    1063972 9vma:E (3.46) BS04 MG N/A N/A A0A6D0I497 40836036
    1063973 9vma:F (3.46) BS01 rna N/A N/A A0A6D0I497 40836036
    1063974 9vma:F (3.46) BS02 rna N/A N/A A0A6D0I497 40836036
    1063975 9vma:F (3.46) BS03 dna N/A N/A A0A6D0I497 40836036
    1063976 9vma:F (3.46) BS04 DTP N/A N/A A0A6D0I497 40836036
    1063977 9vma:F (3.46) BS05 MG N/A N/A A0A6D0I497 40836036
    1063978 9vmj:A (2.2) BS01 CA N/A GO:0008422 ... Q8DMC7 41161445
    1063979 9vmj:B (2.2) BS01 CA N/A GO:0008422 ... Q8DMC7 41161445
    1063980 9vmk:A (2.0) BS01 BGC N/A GO:0008422 ... Q8DMC7 41161445
    1063981 9vmk:A (2.0) BS02 CA N/A GO:0008422 ... Q8DMC7 41161445
    1063982 9vmk:B (2.0) BS01 BGC N/A GO:0008422 ... Q8DMC7 41161445
    1063983 9vmk:B (2.0) BS02 CA N/A GO:0008422 ... Q8DMC7 41161445
    1063984 9vmm:A (3.3) BS01 CTP N/A GO:0000785 ... P17812 40739251
    1063985 9vmm:A (3.3) BS02 CTP N/A GO:0000785 ... P17812 40739251
    1063986 9vmm:A (3.3) BS03 CTP N/A GO:0000785 ... P17812 40739251
    1063987 9vmm:A (3.3) BS04 CTP N/A GO:0000785 ... P17812 40739251
    1063988 9vmm:B (3.3) BS01 CTP N/A GO:0000785 ... P17812 40739251
    1063989 9vmm:B (3.3) BS02 CTP N/A GO:0000785 ... P17812 40739251
    1063990 9vmm:B (3.3) BS03 CTP N/A GO:0000785 ... P17812 40739251
    1063991 9vmm:B (3.3) BS04 CTP N/A GO:0000785 ... P17812 40739251
    1063992 9vmm:C (3.3) BS01 CTP N/A GO:0000785 ... P17812 40739251
    1063993 9vmm:C (3.3) BS02 CTP N/A GO:0000785 ... P17812 40739251
    1063994 9vmm:C (3.3) BS03 CTP N/A GO:0000785 ... P17812 40739251
    1063995 9vmm:C (3.3) BS04 CTP N/A GO:0000785 ... P17812 40739251
    1063996 9vmm:D (3.3) BS01 CTP N/A GO:0000785 ... P17812 40739251
    1063997 9vmm:D (3.3) BS02 CTP N/A GO:0000785 ... P17812 40739251
    1063998 9vmm:D (3.3) BS03 CTP N/A GO:0000785 ... P17812 40739251
    1063999 9vmm:D (3.3) BS04 CTP N/A GO:0000785 ... P17812 40739251
    1064000 9vmn:R (2.6) BS01 AKG N/A N/A Q96P68 41791372

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).