SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1064001 9vmo:R (2.4) BS01 ITN N/A N/A Q96P68 41791372
    1064002 9vmp:R (2.5) BS01 A1E2R N/A N/A Q96P68 41791372
    1064003 9vmx:A (3.2) BS01 peptide N/A GO:0005261 ... Q92508 N/A
    1064004 9vmx:A (3.2) BS02 L9Q N/A GO:0005261 ... Q92508 N/A
    1064005 9vmx:A (3.2) BS03 L9Q N/A GO:0005261 ... Q92508 N/A
    1064006 9vmx:B (3.2) BS01 peptide N/A GO:0005261 ... Q92508 N/A
    1064007 9vmx:B (3.2) BS02 L9Q N/A GO:0005261 ... Q92508 N/A
    1064008 9vmx:B (3.2) BS03 L9Q N/A GO:0005261 ... Q92508 N/A
    1064009 9vmx:D (3.2) BS01 peptide N/A GO:0005261 ... Q92508 N/A
    1064010 9vmx:D (3.2) BS02 L9Q N/A GO:0005261 ... Q92508 N/A
    1064011 9vmx:D (3.2) BS03 L9Q N/A GO:0005261 ... Q92508 N/A
    1064012 9vmy:R (2.86) BS01 A1ES2 N/A GO:0001586 ... P08908
    P0ABE7
    N/A
    1064013 9vmy:R (2.86) BS02 CLR N/A GO:0001586 ... P08908
    P0ABE7
    N/A
    1064014 9vmy:R (2.86) BS03 CLR N/A GO:0001586 ... P08908
    P0ABE7
    N/A
    1064015 9vmy:R (2.86) BS04 T7M N/A GO:0001586 ... P08908
    P0ABE7
    N/A
    1064016 9vn5:A (1.9) BS01 peptide N/A GO:0000122 ... P61964 40773920
    1064017 9vn5:B (1.9) BS01 peptide N/A GO:0000122 ... P61964 40773920
    1064018 9vnf:B (2.74) BS01 T7M N/A GO:0003924 ... P09471 N/A
    1064019 9vnf:R (2.74) BS01 A1ES4 N/A GO:0001586 ... P08908
    P0ABE7
    N/A
    1064020 9vnf:R (2.74) BS02 CLR N/A GO:0001586 ... P08908
    P0ABE7
    N/A
    1064021 9vnf:R (2.74) BS03 CLR N/A GO:0001586 ... P08908
    P0ABE7
    N/A
    1064022 9vnf:R (2.74) BS04 T7M N/A GO:0001586 ... P08908
    P0ABE7
    N/A
    1064023 9vnj:A (2.6) BS01 C8E N/A N/A K7ZP88 41103730
    1064024 9vno:A (1.5) BS01 peptide N/A N/A Q6ZJM9 N/A
    1064025 9vno:A (1.5) BS02 ZN N/A N/A Q6ZJM9 N/A
    1064026 9vno:A (1.5) BS03 ZN N/A N/A Q6ZJM9 N/A
    1064027 9vno:A (1.5) BS04 ZN N/A N/A Q6ZJM9 N/A
    1064028 9vno:A (1.5) BS05 ZN N/A N/A Q6ZJM9 N/A
    1064029 9vnq:A (2.74) BS01 dna N/A GO:0003677 ... O34859 41118517
    1064030 9vnq:A (2.74) BS02 dna N/A GO:0003677 ... O34859 41118517
    1064031 9vnq:B (2.74) BS01 dna N/A GO:0003677 ... O34859 41118517
    1064032 9vnq:B (2.74) BS02 dna N/A GO:0003677 ... O34859 41118517
    1064033 9vnq:C (2.74) BS01 dna N/A GO:0003677 ... O34859 41118517
    1064034 9vnq:C (2.74) BS02 dna N/A GO:0003677 ... O34859 41118517
    1064035 9vnq:D (2.74) BS01 dna N/A GO:0003677 ... O34859 41118517
    1064036 9vnq:D (2.74) BS02 dna N/A GO:0003677 ... O34859 41118517
    1064037 9vnt:A (2.51) BS01 ALF N/A GO:0005515 ... Q8NB49 41237907
    1064038 9vnt:A (2.51) BS02 MG N/A GO:0005515 ... Q8NB49 41237907
    1064039 9vnt:A (2.51) BS03 P5S N/A GO:0005515 ... Q8NB49 41237907
    1064040 9vnx:A (1.93) BS01 peptide N/A GO:0003677 ... P51449 40677142
    1064041 9vnx:A (1.93) BS02 A1MAM N/A GO:0003677 ... P51449 40677142
    1064042 9vny:F (3.69) BS01 A1L3G N/A GO:0001525 ... P0ABE7
    P21453
    N/A
    1064043 9vnz:F (2.79) BS01 A1ESY N/A GO:0001525 ... P0ABE7
    P21453
    N/A
    1064044 9vo0:F (2.79) BS01 A1ESZ N/A GO:0001525 ... P0ABE7
    P21453
    N/A
    1064045 9vo1:F (2.97) BS01 A1LYQ N/A GO:0001525 ... P0ABE7
    P21453
    N/A
    1064046 9vog:A (1.43) BS01 peptide N/A N/A P13053 41205515
    1064047 9vog:A (1.43) BS02 A1MAV N/A N/A P13053 41205515
    1064048 9voh:A (1.98) BS01 peptide N/A N/A P13053 41205515
    1064049 9voh:A (1.98) BS02 A1MAW N/A N/A P13053 41205515
    1064050 9voi:A (1.93) BS01 peptide N/A N/A P13053 41205515
    1064051 9voi:A (1.93) BS02 A1MAX N/A N/A P13053 41205515
    1064052 9voj:A (1.93) BS01 peptide N/A N/A P13053 41205515
    1064053 9voj:A (1.93) BS02 A1MAY N/A N/A P13053 41205515
    1064054 9vok:A (2.04) BS01 peptide N/A N/A P13053 41205515
    1064055 9vok:A (2.04) BS02 A1MAZ N/A N/A P13053 41205515
    1064056 9vol:A (1.75) BS01 peptide N/A N/A P13053 41205515
    1064057 9vol:A (1.75) BS02 A1MAU N/A N/A P13053 41205515
    1064058 9vor:A (3.47) BS01 CLR N/A N/A Q5T848 41588006
    1064059 9vor:A (3.47) BS02 CLR N/A N/A Q5T848 41588006
    1064060 9vor:A (3.47) BS03 CLR N/A N/A Q5T848 41588006
    1064061 9vor:A (3.47) BS04 CLR N/A N/A Q5T848 41588006
    1064062 9vor:A (3.47) BS05 CLR N/A N/A Q5T848 41588006
    1064063 9vor:A (3.47) BS06 PIE N/A N/A Q5T848 41588006
    1064064 9vor:B (3.47) BS01 CLR N/A N/A Q5T848 41588006
    1064065 9vor:B (3.47) BS02 CLR N/A N/A Q5T848 41588006
    1064066 9vor:B (3.47) BS03 CLR N/A N/A Q5T848 41588006
    1064067 9vor:B (3.47) BS04 CLR N/A N/A Q5T848 41588006
    1064068 9vor:B (3.47) BS05 CLR N/A N/A Q5T848 41588006
    1064069 9vor:B (3.47) BS06 CLR N/A N/A Q5T848 41588006
    1064070 9vor:B (3.47) BS07 CLR N/A N/A Q5T848 41588006
    1064071 9vor:B (3.47) BS08 PIE N/A N/A Q5T848 41588006
    1064072 9vp6:A (2.3) BS01 BG6 N/A GO:0004345 ... A2CIK6 41093198
    1064073 9vp7:A (2.25) BS01 GLP N/A GO:0004345 ... A2CIK6 41093198
    1064074 9vpf:A (1.7) BS01 FAD N/A GO:0003884 ... Q75WF1 40970329
    1064075 9vpf:B (1.7) BS01 FAD N/A GO:0003884 ... Q75WF1 40970329
    1064076 9vpf:C (1.7) BS01 FAD N/A GO:0003884 ... Q75WF1 40970329
    1064077 9vpf:D (1.7) BS01 FAD N/A GO:0003884 ... Q75WF1 40970329
    1064078 9vpr:A (1.81) BS01 FMN N/A GO:0004152 ... Q57U83 41241202
    1064079 9vpr:B (1.81) BS01 FMN N/A GO:0004152 ... Q57U83 41241202
    1064080 9vpr:C (1.81) BS01 FMN N/A GO:0004152 ... Q57U83 41241202
    1064081 9vpr:D (1.81) BS01 FMN N/A GO:0004152 ... Q57U83 41241202
    1064082 9vps:A (1.8) BS01 FNR N/A GO:0004152 ... Q57U83 41241202
    1064083 9vps:A (1.8) BS02 SO3 N/A GO:0004152 ... Q57U83 41241202
    1064084 9vps:B (1.8) BS01 FNR N/A GO:0004152 ... Q57U83 41241202
    1064085 9vps:B (1.8) BS02 SO3 N/A GO:0004152 ... Q57U83 41241202
    1064086 9vps:C (1.8) BS01 FNR N/A GO:0004152 ... Q57U83 41241202
    1064087 9vps:C (1.8) BS02 SO3 N/A GO:0004152 ... Q57U83 41241202
    1064088 9vps:D (1.8) BS01 FNR N/A GO:0004152 ... Q57U83 41241202
    1064089 9vps:D (1.8) BS02 SO3 N/A GO:0004152 ... Q57U83 41241202
    1064090 9vpt:A (1.9) BS01 FMN N/A GO:0004152 ... Q57U83 41241202
    1064091 9vpt:A (1.9) BS02 DOR N/A GO:0004152 ... Q57U83 41241202
    1064092 9vpt:B (1.9) BS01 FMN N/A GO:0004152 ... Q57U83 41241202
    1064093 9vpt:B (1.9) BS02 DOR N/A GO:0004152 ... Q57U83 41241202
    1064094 9vpt:C (1.9) BS01 FMN N/A GO:0004152 ... Q57U83 41241202
    1064095 9vpt:C (1.9) BS02 DOR N/A GO:0004152 ... Q57U83 41241202
    1064096 9vpt:D (1.9) BS01 FMN N/A GO:0004152 ... Q57U83 41241202
    1064097 9vpt:D (1.9) BS02 DOR N/A GO:0004152 ... Q57U83 41241202
    1064098 9vpu:A (2.0) BS01 FNR N/A GO:0004152 ... Q57U83 41241202
    1064099 9vpu:A (2.0) BS02 DOR N/A GO:0004152 ... Q57U83 41241202
    1064100 9vpu:B (2.0) BS01 FNR N/A GO:0004152 ... Q57U83 41241202
    1064101 9vpu:B (2.0) BS02 DOR N/A GO:0004152 ... Q57U83 41241202
    1064102 9vpu:C (2.0) BS01 FNR N/A GO:0004152 ... Q57U83 41241202
    1064103 9vpu:C (2.0) BS02 DOR N/A GO:0004152 ... Q57U83 41241202
    1064104 9vpu:D (2.0) BS01 FNR N/A GO:0004152 ... Q57U83 41241202
    1064105 9vpu:D (2.0) BS02 DOR N/A GO:0004152 ... Q57U83 41241202
    1064106 9vpv:A (2.4) BS01 FMN N/A GO:0004152 ... Q57U83 41241202
    1064107 9vpv:B (2.4) BS01 FMN N/A GO:0004152 ... Q57U83 41241202
    1064108 9vpv:C (2.4) BS01 FMN N/A GO:0004152 ... Q57U83 41241202
    1064109 9vpv:D (2.4) BS01 FMN N/A GO:0004152 ... Q57U83 41241202
    1064110 9vpw:A (2.3) BS01 FNR N/A GO:0004152 ... Q57U83 41241202
    1064111 9vpw:B (2.3) BS01 FNR N/A GO:0004152 ... Q57U83 41241202
    1064112 9vpw:C (2.3) BS01 FNR N/A GO:0004152 ... Q57U83 41241202
    1064113 9vpw:D (2.3) BS01 FNR N/A GO:0004152 ... Q57U83 41241202
    1064114 9vpx:A (1.98) BS01 FMN N/A GO:0004152 ... Q57U83 41241202
    1064115 9vpx:A (1.98) BS02 FUM N/A GO:0004152 ... Q57U83 41241202
    1064116 9vpx:B (1.98) BS01 FMN N/A GO:0004152 ... Q57U83 41241202
    1064117 9vpx:B (1.98) BS02 FUM N/A GO:0004152 ... Q57U83 41241202
    1064118 9vpx:C (1.98) BS01 FMN N/A GO:0004152 ... Q57U83 41241202
    1064119 9vpx:C (1.98) BS02 FUM N/A GO:0004152 ... Q57U83 41241202
    1064120 9vpx:D (1.98) BS01 FMN N/A GO:0004152 ... Q57U83 41241202
    1064121 9vpx:D (1.98) BS02 FUM N/A GO:0004152 ... Q57U83 41241202
    1064122 9vpy:A (2.48) BS01 FNR N/A GO:0004152 ... Q57U83 41241202
    1064123 9vpy:A (2.48) BS02 FUM N/A GO:0004152 ... Q57U83 41241202
    1064124 9vpy:B (2.48) BS01 FNR N/A GO:0004152 ... Q57U83 41241202
    1064125 9vpy:B (2.48) BS02 FUM N/A GO:0004152 ... Q57U83 41241202
    1064126 9vpy:C (2.48) BS01 FNR N/A GO:0004152 ... Q57U83 41241202
    1064127 9vpy:C (2.48) BS02 FUM N/A GO:0004152 ... Q57U83 41241202
    1064128 9vpy:D (2.48) BS01 FNR N/A GO:0004152 ... Q57U83 41241202
    1064129 9vpy:D (2.48) BS02 FUM N/A GO:0004152 ... Q57U83 41241202
    1064130 9vpz:A (1.75) BS01 FNR N/A GO:0004152 ... Q57U83 41241202
    1064131 9vpz:A (1.75) BS02 SO3 N/A GO:0004152 ... Q57U83 41241202
    1064132 9vpz:B (1.75) BS01 FNR N/A GO:0004152 ... Q57U83 41241202
    1064133 9vpz:B (1.75) BS02 SO3 N/A GO:0004152 ... Q57U83 41241202
    1064134 9vpz:C (1.75) BS01 FNR N/A GO:0004152 ... Q57U83 41241202
    1064135 9vpz:C (1.75) BS02 SO3 N/A GO:0004152 ... Q57U83 41241202
    1064136 9vpz:D (1.75) BS01 FNR N/A GO:0004152 ... Q57U83 41241202
    1064137 9vpz:D (1.75) BS02 SO3 N/A GO:0004152 ... Q57U83 41241202
    1064138 9vq0:A (1.95) BS01 FMN N/A GO:0004152 ... Q57U83 41241202
    1064139 9vq0:B (1.95) BS01 FMN N/A GO:0004152 ... Q57U83 41241202
    1064140 9vq0:C (1.95) BS01 FMN N/A GO:0004152 ... Q57U83 41241202
    1064141 9vq0:D (1.95) BS01 FMN N/A GO:0004152 ... Q57U83 41241202
    1064142 9vq1:A (-1.00) BS01 peptide N/A N/A O60885 41702923
    1064143 9vq2:A (3.4) BS01 ALF N/A GO:0005515 ... Q8NB49 41237907
    1064144 9vq2:A (3.4) BS02 P5S N/A GO:0005515 ... Q8NB49 41237907
    1064145 9vq3:A (2.4) BS01 A1ETB N/A N/A Q9Y233 41269079
    1064146 9vq3:A (2.4) BS02 ZN N/A N/A Q9Y233 41269079
    1064147 9vq3:B (2.4) BS01 A1ETB N/A N/A Q9Y233 41269079
    1064148 9vq3:B (2.4) BS02 ZN N/A N/A Q9Y233 41269079
    1064149 9vqk:A (2.02) BS01 PLP N/A N/A N/A N/A
    1064150 9vqk:D (2.02) BS01 PLP N/A N/A N/A N/A
    1064151 9vqk:F (2.02) BS01 PLP N/A N/A N/A N/A
    1064152 9vqk:H (2.02) BS01 PLP N/A N/A N/A N/A
    1064153 9vqm:A (3.5) BS01 CU N/A N/A A2AFS3 40737321
    1064154 9vqm:D (3.5) BS01 CU N/A N/A A2AFS3 40737321
    1064155 9vr0:A (-1.00) BS01 HEC N/A GO:0009055 ... A0A8J0PCM1 N/A
    1064156 9vrr:A (1.95) BS01 A1ETL N/A N/A P17706 41047545
    1064157 9vrr:B (1.95) BS01 A1ETL N/A N/A P17706 41047545
    1064158 9vrs:A (2.0) BS01 A1ETK N/A N/A P17706 41047545
    1064159 9vrs:B (2.0) BS01 A1ETK N/A N/A P17706 41047545
    1064160 9vs1:A (1.7) BS01 A1MA2 N/A GO:0008233 ... P0DTC1 40939708
    1064161 9vs1:B (1.7) BS01 A1MA2 N/A GO:0008233 ... P0DTC1 40939708
    1064162 9vsc:A (3.2) BS01 CA N/A GO:0000325 ... Q39253 N/A
    1064163 9vsc:B (3.2) BS01 CA N/A GO:0000325 ... Q39253 N/A
    1064164 9vsc:C (3.2) BS01 CA N/A GO:0000325 ... Q39253 N/A
    1064165 9vsj:A (1.55) BS01 CA N/A GO:0005509 ... N/A N/A
    1064166 9vsj:A (1.55) BS02 CA N/A GO:0005509 ... N/A N/A
    1064167 9vsl:A (2.88) BS01 MG N/A GO:0005515 ... Q8NB49 41237907
    1064168 9vsm:A (1.58) BS01 E9U N/A GO:0000096 ... F9URD2 41562399
    1064169 9vsm:A (1.58) BS02 E9U N/A GO:0000096 ... F9URD2 41562399
    1064170 9vsm:B (1.58) BS01 E9U N/A GO:0000096 ... F9URD2 41562399
    1064171 9vsm:B (1.58) BS02 E9U N/A GO:0000096 ... F9URD2 41562399
    1064172 9vsm:C (1.58) BS01 E9U N/A GO:0000096 ... F9URD2 41562399
    1064173 9vsm:D (1.58) BS01 E9U N/A GO:0000096 ... F9URD2 41562399
    1064174 9vsq:A (2.74) BS01 YN9 N/A GO:0005267 ... Q9BSA9 40865534
    1064175 9vsq:A (2.74) BS02 CLR N/A GO:0005267 ... Q9BSA9 40865534
    1064176 9vsq:B (2.74) BS01 YN9 N/A GO:0005267 ... Q9BSA9 40865534
    1064177 9vsq:B (2.74) BS02 CLR N/A GO:0005267 ... Q9BSA9 40865534
    1064178 9vsr:A (2.92) BS01 YN9 N/A GO:0005267 ... Q9BSA9 40865534
    1064179 9vsr:A (2.92) BS02 CLR N/A GO:0005267 ... Q9BSA9 40865534
    1064180 9vsr:A (2.92) BS03 A1ETE N/A GO:0005267 ... Q9BSA9 40865534
    1064181 9vsr:A (2.92) BS04 A1ETE N/A GO:0005267 ... Q9BSA9 40865534
    1064182 9vsr:B (2.92) BS01 A1ETE N/A GO:0005267 ... Q9BSA9 40865534
    1064183 9vtk:A (1.74) BS01 FE N/A N/A N/A N/A
    1064184 9vtk:A (1.74) BS02 CA N/A N/A N/A N/A
    1064185 9vtk:A (1.74) BS03 CA N/A N/A N/A N/A
    1064186 9vtk:A (1.74) BS04 MN N/A N/A N/A N/A
    1064187 9vtp:A (2.68) BS01 rna N/A N/A Q87GC8 41495894
    1064188 9vtp:A (2.68) BS02 dna N/A N/A Q87GC8 41495894
    1064189 9vtp:B (2.68) BS01 rna N/A N/A Q87GC8 41495894
    1064190 9vtp:B (2.68) BS02 dna N/A N/A Q87GC8 41495894
    1064191 9vtp:C (2.68) BS01 rna N/A N/A Q87GC8 41495894
    1064192 9vtp:C (2.68) BS02 dna N/A N/A Q87GC8 41495894
    1064193 9vtp:D (2.68) BS01 rna N/A N/A Q87GC8 41495894
    1064194 9vtp:D (2.68) BS02 dna N/A N/A Q87GC8 41495894
    1064195 9vtp:E (2.68) BS01 rna N/A N/A Q87GC8 41495894
    1064196 9vtp:E (2.68) BS02 dna N/A N/A Q87GC8 41495894
    1064197 9vtp:F (2.68) BS01 rna N/A N/A Q87GC8 41495894
    1064198 9vtp:F (2.68) BS02 dna N/A N/A Q87GC8 41495894
    1064199 9vtp:G (2.68) BS01 rna N/A N/A Q87GC9 41495894
    1064200 9vtp:G (2.68) BS02 dna N/A N/A Q87GC9 41495894

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).