SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1064201 9vtp:G (2.68) BS03 dna N/A N/A Q87GC9 41495894
    1064202 9vtp:H (2.68) BS01 rna N/A N/A Q87GC7 41495894
    1064203 9vtq:A (2.84) BS01 rna N/A N/A Q87GC8 41495894
    1064204 9vtq:A (2.84) BS02 dna N/A N/A Q87GC8 41495894
    1064205 9vtq:B (2.84) BS01 rna N/A N/A Q87GC8 41495894
    1064206 9vtq:B (2.84) BS02 dna N/A N/A Q87GC8 41495894
    1064207 9vtq:C (2.84) BS01 rna N/A N/A Q87GC8 41495894
    1064208 9vtq:C (2.84) BS02 dna N/A N/A Q87GC8 41495894
    1064209 9vtq:D (2.84) BS01 rna N/A N/A Q87GC8 41495894
    1064210 9vtq:D (2.84) BS02 dna N/A N/A Q87GC8 41495894
    1064211 9vtq:E (2.84) BS01 rna N/A N/A Q87GC8 41495894
    1064212 9vtq:E (2.84) BS02 dna N/A N/A Q87GC8 41495894
    1064213 9vtq:F (2.84) BS01 rna N/A N/A Q87GC8 41495894
    1064214 9vtq:F (2.84) BS02 dna N/A N/A Q87GC8 41495894
    1064215 9vtq:G (2.84) BS01 rna N/A N/A Q87GC9 41495894
    1064216 9vtq:G (2.84) BS02 dna N/A N/A Q87GC9 41495894
    1064217 9vtq:G (2.84) BS03 dna N/A N/A Q87GC9 41495894
    1064218 9vtq:H (2.84) BS01 rna N/A N/A Q87GC7 41495894
    1064219 9vtr:A (2.89) BS01 rna N/A N/A Q87GC8 41495894
    1064220 9vtr:A (2.89) BS02 dna N/A N/A Q87GC8 41495894
    1064221 9vtr:B (2.89) BS01 rna N/A N/A Q87GC8 41495894
    1064222 9vtr:B (2.89) BS02 dna N/A N/A Q87GC8 41495894
    1064223 9vtr:C (2.89) BS01 rna N/A N/A Q87GC8 41495894
    1064224 9vtr:C (2.89) BS02 dna N/A N/A Q87GC8 41495894
    1064225 9vtr:D (2.89) BS01 rna N/A N/A Q87GC8 41495894
    1064226 9vtr:D (2.89) BS02 dna N/A N/A Q87GC8 41495894
    1064227 9vtr:E (2.89) BS01 rna N/A N/A Q87GC8 41495894
    1064228 9vtr:E (2.89) BS02 dna N/A N/A Q87GC8 41495894
    1064229 9vtr:F (2.89) BS01 rna N/A N/A Q87GC8 41495894
    1064230 9vtr:F (2.89) BS02 dna N/A N/A Q87GC8 41495894
    1064231 9vtr:G (2.89) BS01 rna N/A N/A Q87GC9 41495894
    1064232 9vtr:G (2.89) BS02 dna N/A N/A Q87GC9 41495894
    1064233 9vtr:G (2.89) BS03 dna N/A N/A Q87GC9 41495894
    1064234 9vtr:H (2.89) BS01 rna N/A N/A Q87GC7 41495894
    1064235 9vtr:I (2.89) BS01 dna N/A N/A Q87GD0 41495894
    1064236 9vu6:A (3.29) BS01 dna N/A N/A Q22GC0 41027852
    1064237 9vu6:A (3.29) BS02 dna N/A N/A Q22GC0 41027852
    1064238 9vu6:A (3.29) BS03 SAM N/A N/A Q22GC0 41027852
    1064239 9vu9:A (3.34) BS01 A1ETX N/A N/A Q9H2S1 41540047
    1064240 9vu9:D (3.34) BS01 A1ETX N/A N/A Q9H2S1 41540047
    1064241 9vua:C (3.23) BS01 peptide N/A N/A Q9H2S1 41540047
    1064242 9vub:A (3.35) BS01 CLR N/A N/A Q9H2S1 41540047
    1064243 9vub:A (3.35) BS02 CLR N/A N/A Q9H2S1 41540047
    1064244 9vub:B (3.35) BS01 CLR N/A N/A Q9H2S1 41540047
    1064245 9vub:B (3.35) BS02 CLR N/A N/A Q9H2S1 41540047
    1064246 9vub:C (3.35) BS01 CLR N/A N/A Q9H2S1 41540047
    1064247 9vub:C (3.35) BS02 CLR N/A N/A Q9H2S1 41540047
    1064248 9vub:D (3.35) BS01 CLR N/A N/A Q9H2S1 41540047
    1064249 9vub:D (3.35) BS02 CLR N/A N/A Q9H2S1 41540047
    1064250 9vub:E (3.35) BS01 CA N/A N/A P0DP23 41540047
    1064251 9vub:E (3.35) BS02 CA N/A N/A P0DP23 41540047
    1064252 9vub:E (3.35) BS03 CA N/A N/A P0DP23 41540047
    1064253 9vub:E (3.35) BS04 A1B92 N/A N/A P0DP23 41540047
    1064254 9vub:F (3.35) BS01 CA N/A N/A P0DP23 41540047
    1064255 9vub:F (3.35) BS02 CA N/A N/A P0DP23 41540047
    1064256 9vub:F (3.35) BS03 CA N/A N/A P0DP23 41540047
    1064257 9vub:F (3.35) BS04 A1B92 N/A N/A P0DP23 41540047
    1064258 9vub:G (3.35) BS01 CA N/A N/A P0DP23 41540047
    1064259 9vub:G (3.35) BS02 CA N/A N/A P0DP23 41540047
    1064260 9vub:G (3.35) BS03 CA N/A N/A P0DP23 41540047
    1064261 9vub:H (3.35) BS01 CA N/A N/A P0DP23 41540047
    1064262 9vub:H (3.35) BS02 CA N/A N/A P0DP23 41540047
    1064263 9vub:H (3.35) BS03 CA N/A N/A P0DP23 41540047
    1064264 9vub:H (3.35) BS04 A1B92 N/A N/A P0DP23 41540047
    1064265 9vuu:A (2.4) BS01 OF9 N/A N/A A0A2P1G738 41734227
    1064266 9vuu:B (2.4) BS01 OF9 N/A N/A A0A2P1G738 41734227
    1064267 9vuv:A (2.0) BS01 LVX N/A N/A A0A2P1G738 41734227
    1064268 9vuv:B (2.0) BS01 LVX N/A N/A A0A2P1G738 41734227
    1064269 9vv4:A (3.55) BS01 FAD N/A N/A A0A1S4BZQ6 41582710
    1064270 9vv4:B (3.55) BS01 FAD N/A N/A A0A1S4BZQ6 41582710
    1064271 9vva:A (1.75) BS01 rna N/A N/A P09651 N/A
    1064272 9vvo:A (2.66) BS01 MG N/A GO:0005886 ... A0A8D1T4M7 41536160
    1064273 9vvo:A (2.66) BS02 A1MA7 N/A GO:0005886 ... A0A8D1T4M7 41536160
    1064274 9vvo:B (2.66) BS01 CLR N/A GO:0001671 ... P18434 41536160
    1064275 9vvp:I (3.33) BS01 peptide N/A GO:0039678 ... N/A 41317731
    1064276 9vvp:J (3.33) BS01 peptide N/A GO:0039678 ... N/A 41317731
    1064277 9vvp:M (3.33) BS01 peptide N/A GO:0039678 ... N/A 41317731
    1064278 9vvp:N (3.33) BS01 peptide N/A GO:0039678 ... N/A 41317731
    1064279 9vvp:P (3.33) BS01 peptide N/A GO:0039678 ... N/A 41317731
    1064280 9vvp:T (3.33) BS01 peptide N/A GO:0039678 ... N/A 41317731
    1064281 9vvp:U (3.33) BS01 peptide N/A GO:0039678 ... N/A 41317731
    1064282 9vvp:V (3.33) BS01 peptide N/A GO:0039678 ... N/A 41317731
    1064283 9vvp:X (3.33) BS01 peptide N/A GO:0039678 ... N/A 41317731
    1064284 9vvp:Y (3.33) BS01 peptide N/A GO:0039678 ... N/A 41317731
    1064285 9vvp:Z (3.33) BS01 peptide N/A GO:0039678 ... N/A 41317731
    1064286 9vvp:a (3.33) BS01 peptide N/A GO:0039678 ... N/A 41317731
    1064287 9vvp:b (3.33) BS01 peptide N/A GO:0039678 ... N/A 41317731
    1064288 9vvp:j (3.33) BS01 peptide N/A GO:0039678 ... N/A 41317731
    1064289 9vvs:A (2.68) BS01 NDP N/A GO:0016491 ... W5W0Y1 41140043
    1064290 9vvs:B (2.68) BS01 NDP N/A GO:0016491 ... W5W0Y1 41140043
    1064291 9vw7:A (2.499) BS01 NDP N/A GO:0016491 ... W5W0Y1 41140043
    1064292 9vw7:B (2.499) BS01 NDP N/A GO:0016491 ... W5W0Y1 41140043
    1064293 9vwb:A (2.0) BS01 FE N/A N/A A0A144VC93 41103923
    1064294 9vwt:A (1.77) BS01 peptide N/A GO:0004252 ... P03952 39167871
    1064295 9vwu:A (1.91) BS01 FAD N/A N/A A0A861B9Z9 N/A
    1064296 9vwu:A (1.91) BS02 TRP N/A N/A A0A861B9Z9 N/A
    1064297 9vwu:A (1.91) BS03 TRP N/A N/A A0A861B9Z9 N/A
    1064298 9vwv:A (1.81) BS01 FAD N/A N/A A0A861B9Z9 N/A
    1064299 9vwv:A (1.81) BS02 TRP N/A N/A A0A861B9Z9 N/A
    1064300 9vwv:A (1.81) BS03 TRP N/A N/A A0A861B9Z9 N/A
    1064301 9vww:A (2.32) BS01 FAD N/A N/A A0A861B9Z9 N/A
    1064302 9vww:A (2.32) BS02 TRP N/A N/A A0A861B9Z9 N/A
    1064303 9vwx:A (2.29) BS01 TRP N/A N/A A0A861B9Z9 N/A
    1064304 9vwx:A (2.29) BS02 TRP N/A N/A A0A861B9Z9 N/A
    1064305 9vwx:A (2.29) BS03 FAD N/A N/A A0A861B9Z9 N/A
    1064306 9vwy:A (1.83) BS01 ZN N/A GO:0006508 ... P0DTD1 N/A
    1064307 9vx1:A (2.77) BS01 rna N/A N/A N/A 41495039
    1064308 9vx1:D (2.77) BS01 rna N/A N/A N/A 41495039
    1064309 9vx3:A (2.39) BS01 peptide N/A N/A Q13043 41349762
    1064310 9vx3:B (2.39) BS01 peptide N/A N/A Q13043 41349762
    1064311 9vx3:D (2.39) BS01 peptide N/A N/A Q13043 41349762
    1064312 9vx3:E (2.39) BS01 peptide N/A N/A Q13043 41349762
    1064313 9vx6:O (2.64) BS01 dna N/A N/A N/A 41495039
    1064314 9vx6:O (2.64) BS02 rna N/A N/A N/A 41495039
    1064315 9vx6:P (2.64) BS01 dna N/A N/A N/A 41495039
    1064316 9vx6:P (2.64) BS02 rna N/A N/A N/A 41495039
    1064317 9vx6:S (2.64) BS01 dna N/A N/A N/A 41495039
    1064318 9vx6:S (2.64) BS02 rna N/A N/A N/A 41495039
    1064319 9vx6:T (2.64) BS01 dna N/A N/A N/A 41495039
    1064320 9vx6:T (2.64) BS02 rna N/A N/A N/A 41495039
    1064321 9vx6:T (2.64) BS03 dna N/A N/A N/A 41495039
    1064322 9vx6:T (2.64) BS04 rna N/A N/A N/A 41495039
    1064323 9vx6:U (2.64) BS01 dna N/A N/A N/A 41495039
    1064324 9vx6:U (2.64) BS02 rna N/A N/A N/A 41495039
    1064325 9vx6:W (2.64) BS01 dna N/A N/A N/A 41495039
    1064326 9vx6:W (2.64) BS02 rna N/A N/A N/A 41495039
    1064327 9vx6:X (2.64) BS01 dna N/A N/A N/A 41495039
    1064328 9vx6:X (2.64) BS02 rna N/A N/A N/A 41495039
    1064329 9vx6:Y (2.64) BS01 dna N/A N/A N/A 41495039
    1064330 9vx6:Y (2.64) BS02 dna N/A N/A N/A 41495039
    1064331 9vx6:Y (2.64) BS03 rna N/A N/A N/A 41495039
    1064332 9vx6:Y (2.64) BS04 rna N/A N/A N/A 41495039
    1064333 9vxg:A (2.302) BS01 peptide N/A N/A Q8ZP43 N/A
    1064334 9vxg:A (2.302) BS02 ZN N/A N/A Q8ZP43 N/A
    1064335 9vxi:A (2.47) BS01 GGS N/A N/A Q0INZ4 N/A
    1064336 9vxi:A (2.47) BS02 CO N/A N/A Q0INZ4 N/A
    1064337 9vxi:A (2.47) BS03 CO N/A N/A Q0INZ4 N/A
    1064338 9vxi:A (2.47) BS04 GGS N/A N/A Q0INZ4 N/A
    1064339 9vxi:C (2.47) BS01 GGS N/A N/A Q0INZ4 N/A
    1064340 9vxi:C (2.47) BS02 GGS N/A N/A Q0INZ4 N/A
    1064341 9vxi:C (2.47) BS03 CO N/A N/A Q0INZ4 N/A
    1064342 9vxi:C (2.47) BS04 CO N/A N/A Q0INZ4 N/A
    1064343 9vxs:A (2.5) BS01 A1II0 N/A GO:0008800 ... P52682 N/A
    1064344 9vxs:B (2.5) BS01 A1II0 N/A GO:0008800 ... P52682 N/A
    1064345 9vyl:A (1.539) BS01 NAD N/A GO:0005737 ... A0A5B8Z670 41270486
    1064346 9vyl:A (1.539) BS02 ZN N/A GO:0005737 ... A0A5B8Z670 41270486
    1064347 9vyl:B (1.539) BS01 NAD N/A GO:0005737 ... A0A5B8Z670 41270486
    1064348 9vyl:B (1.539) BS02 ZN N/A GO:0005737 ... A0A5B8Z670 41270486
    1064349 9vyl:C (1.539) BS01 NAD N/A GO:0005737 ... A0A5B8Z670 41270486
    1064350 9vyl:C (1.539) BS02 ZN N/A GO:0005737 ... A0A5B8Z670 41270486
    1064351 9vyl:D (1.539) BS01 NAD N/A GO:0005737 ... A0A5B8Z670 41270486
    1064352 9vyl:D (1.539) BS02 ZN N/A GO:0005737 ... A0A5B8Z670 41270486
    1064353 9vzx:A (2.78) BS01 rna N/A N/A N/A N/A
    1064354 9vzx:A (2.78) BS02 dna N/A N/A N/A N/A
    1064355 9vzx:B (2.78) BS01 rna N/A N/A N/A N/A
    1064356 9vzx:B (2.78) BS02 dna N/A N/A N/A N/A
    1064357 9vzx:B (2.78) BS03 dna N/A N/A N/A N/A
    1064358 9w02:A (2.72) BS01 rna N/A N/A N/A N/A
    1064359 9w02:A (2.72) BS02 dna N/A N/A N/A N/A
    1064360 9w02:B (2.72) BS01 rna N/A N/A N/A N/A
    1064361 9w02:B (2.72) BS02 dna N/A N/A N/A N/A
    1064362 9w03:A (3.3) BS01 rna N/A N/A N/A N/A
    1064363 9w03:B (3.3) BS01 rna N/A N/A N/A N/A
    1064364 9w04:A (2.33) BS01 rna N/A N/A N/A N/A
    1064365 9w04:A (2.33) BS02 dna N/A N/A N/A N/A
    1064366 9w04:A (2.33) BS03 dna N/A N/A N/A N/A
    1064367 9w04:A (2.33) BS04 dna N/A N/A N/A N/A
    1064368 9w04:A (2.33) BS05 dna N/A N/A N/A N/A
    1064369 9w04:A (2.33) BS06 MG N/A N/A N/A N/A
    1064370 9w04:B (2.33) BS01 rna N/A N/A N/A N/A
    1064371 9w04:B (2.33) BS02 dna N/A N/A N/A N/A
    1064372 9w04:B (2.33) BS03 dna N/A N/A N/A N/A
    1064373 9w04:B (2.33) BS04 dna N/A N/A N/A N/A
    1064374 9w04:B (2.33) BS05 dna N/A N/A N/A N/A
    1064375 9w04:B (2.33) BS06 MG N/A N/A N/A N/A
    1064376 9w11:A (1.83) BS01 ZHB N/A N/A P03372 N/A
    1064377 9w11:B (1.83) BS01 ZHB N/A N/A P03372 N/A
    1064378 9w12:A (1.75) BS01 A1ET8 N/A N/A P03372 N/A
    1064379 9w12:B (1.75) BS01 A1ET8 N/A N/A P03372 N/A
    1064380 9w13:A (2.05) BS01 A1ET9 N/A N/A P03372 N/A
    1064381 9w13:B (2.05) BS01 A1ET9 N/A N/A P03372 N/A
    1064382 9w14:B (2.33) BS01 FUC N/A N/A N/A 41359663
    1064383 9w14:C (2.33) BS01 FUC N/A N/A N/A 41359663
    1064384 9w1b:A (2.87) BS01 IHP N/A N/A N/A N/A
    1064385 9w1b:A (2.87) BS02 IHP N/A N/A N/A N/A
    1064386 9w1b:E (2.87) BS01 IHP N/A N/A N/A N/A
    1064387 9w1b:E (2.87) BS02 IHP N/A N/A N/A N/A
    1064388 9w1c:A (1.92) BS01 BCL N/A GO:0005886 ... W8KQR0 41313718
    1064389 9w1c:A (1.92) BS02 A1MBA N/A GO:0005886 ... W8KQR0 41313718
    1064390 9w1c:A (1.92) BS03 BCL N/A GO:0005886 ... W8KQR0 41313718
    1064391 9w1c:A (1.92) BS04 BCL N/A GO:0005886 ... W8KQR0 41313718
    1064392 9w1c:A (1.92) BS05 BCL N/A GO:0005886 ... W8KQR0 41313718
    1064393 9w1c:C (1.92) BS01 BCL N/A GO:0005886 ... W8KE12 41313718
    1064394 9w1c:C (1.92) BS02 A1MBA N/A GO:0005886 ... W8KE12 41313718
    1064395 9w1c:C (1.92) BS03 BCL N/A GO:0005886 ... W8KE12 41313718
    1064396 9w1c:C (1.92) BS04 BCL N/A GO:0005886 ... W8KE12 41313718
    1064397 9w1c:C (1.92) BS05 A1MBA N/A GO:0005886 ... W8KE12 41313718
    1064398 9w1c:C (1.92) BS06 A1MBA N/A GO:0005886 ... W8KE12 41313718
    1064399 9w1c:D (1.92) BS01 BCL N/A GO:0005886 ... W8KQR0 41313718
    1064400 9w1c:D (1.92) BS02 BCL N/A GO:0005886 ... W8KQR0 41313718

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).