SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1064801 9wbz:H (2.9) BS02 dna N/A GO:0000786 ... P02281 41402274
    1064802 9wbz:K (2.9) BS01 dna N/A GO:0000786 ... P84233 41402274
    1064803 9wbz:K (2.9) BS02 dna N/A GO:0000786 ... P84233 41402274
    1064804 9wc0:B (2.4) BS01 dna N/A GO:0000786 ... P62799 41402274
    1064805 9wc0:B (2.4) BS02 dna N/A GO:0000786 ... P62799 41402274
    1064806 9wc0:C (2.4) BS01 dna N/A GO:0000786 ... Q6AZJ8 41402274
    1064807 9wc0:C (2.4) BS02 dna N/A GO:0000786 ... Q6AZJ8 41402274
    1064808 9wc0:D (2.4) BS01 dna N/A GO:0000786 ... P02281 41402274
    1064809 9wc0:D (2.4) BS02 dna N/A GO:0000786 ... P02281 41402274
    1064810 9wc0:E (2.4) BS01 dna N/A GO:0000786 ... P84233 41402274
    1064811 9wc0:E (2.4) BS02 dna N/A GO:0000786 ... P84233 41402274
    1064812 9wc0:F (2.4) BS01 dna N/A GO:0000786 ... P62799 41402274
    1064813 9wc0:F (2.4) BS02 dna N/A GO:0000786 ... P62799 41402274
    1064814 9wc0:G (2.4) BS01 dna N/A GO:0000786 ... Q6AZJ8 41402274
    1064815 9wc0:G (2.4) BS02 dna N/A GO:0000786 ... Q6AZJ8 41402274
    1064816 9wc0:G (2.4) BS03 peptide N/A GO:0000786 ... Q6AZJ8 41402274
    1064817 9wc0:H (2.4) BS01 dna N/A GO:0000786 ... P02281 41402274
    1064818 9wc0:H (2.4) BS02 dna N/A GO:0000786 ... P02281 41402274
    1064819 9wc0:H (2.4) BS03 peptide N/A GO:0000786 ... P02281 41402274
    1064820 9wc0:K (2.4) BS01 dna N/A GO:0000786 ... P84233 41402274
    1064821 9wc0:K (2.4) BS02 dna N/A GO:0000786 ... P84233 41402274
    1064822 9wc1:A (3.4) BS01 peptide N/A GO:0000776 ... P60709 41402274
    1064823 9wc1:B (3.4) BS01 peptide N/A GO:0000723 ... O96019 41402274
    1064824 9wd8:A (3.9) BS01 A1BBG N/A GO:0005216 ... P51787 40745202
    1064825 9wd8:A (3.9) BS02 A1BBG N/A GO:0005216 ... P51787 40745202
    1064826 9wd8:B (3.9) BS01 CA N/A GO:0000922 ... P0DP23 40745202
    1064827 9wd8:C (3.9) BS01 A1BBG N/A GO:0005249 ... Q9Y6H6 40745202
    1064828 9wd8:D (3.9) BS01 A1BBG N/A GO:0005216 ... P51787 40745202
    1064829 9wd8:D (3.9) BS02 A1BBG N/A GO:0005216 ... P51787 40745202
    1064830 9wd8:E (3.9) BS01 CA N/A GO:0000922 ... P0DP23 40745202
    1064831 9wd8:F (3.9) BS01 A1BBG N/A GO:0005249 ... Q9Y6H6 40745202
    1064832 9wd8:G (3.9) BS01 A1BBG N/A GO:0005216 ... P51787 40745202
    1064833 9wd8:G (3.9) BS02 A1BBG N/A GO:0005216 ... P51787 40745202
    1064834 9wd8:H (3.9) BS01 CA N/A GO:0000922 ... P0DP23 40745202
    1064835 9wd8:I (3.9) BS01 A1BBG N/A GO:0005249 ... Q9Y6H6 40745202
    1064836 9wd8:J (3.9) BS01 A1BBG N/A GO:0005216 ... P51787 40745202
    1064837 9wd8:J (3.9) BS02 A1BBG N/A GO:0005216 ... P51787 40745202
    1064838 9wd8:K (3.9) BS01 CA N/A GO:0000922 ... P0DP23 40745202
    1064839 9wd8:L (3.9) BS01 A1BBG N/A GO:0005249 ... Q9Y6H6 40745202
    1064840 9wdp:A (3.27) BS01 peptide N/A N/A P03420
    P10104
    N/A
    1064841 9wdp:A (3.27) BS02 A1EV1 N/A N/A P03420
    P10104
    N/A
    1064842 9wdp:B (3.27) BS01 A1EV1 N/A N/A P03420
    P10104
    N/A
    1064843 9wdp:F (3.27) BS01 peptide N/A N/A N/A N/A
    1064844 9wdp:H (3.27) BS01 peptide N/A N/A N/A N/A
    1064845 9wf1:A (1.93) BS01 A1EVZ N/A N/A N/A N/A
    1064846 9wf1:A (1.93) BS02 A1EVZ N/A N/A N/A N/A
    1064847 9wf1:D (1.93) BS01 A1EVZ N/A N/A N/A N/A
    1064848 9wf1:F (1.93) BS01 A1EVZ N/A N/A N/A N/A
    1064849 9wf1:F (1.93) BS02 A1EVZ N/A N/A N/A N/A
    1064850 9wf1:H (1.93) BS01 A1EVZ N/A N/A N/A N/A
    1064851 9wf6:A (2.99) BS01 MG N/A GO:0000287 ... P0A6F5 N/A
    1064852 9wf6:D (2.99) BS01 MG N/A GO:0000287 ... P0A6F5 N/A
    1064853 9wf6:E (2.99) BS01 MG N/A GO:0000287 ... P0A6F5 N/A
    1064854 9wf6:F (2.99) BS01 MG N/A GO:0000287 ... P0A6F5 N/A
    1064855 9wf6:H (2.99) BS01 MG N/A GO:0000287 ... P0A6F5 N/A
    1064856 9wf6:M (2.99) BS01 MG N/A GO:0000287 ... P0A6F5 N/A
    1064857 9wf6:N (2.99) BS01 MG N/A GO:0000287 ... P0A6F5 N/A
    1064858 9wf6:T (2.99) BS01 MG N/A GO:0000287 ... P0A6F5 N/A
    1064859 9wf6:U (2.99) BS01 MG N/A GO:0000287 ... P0A6F5 N/A
    1064860 9wf6:V (2.99) BS01 MG N/A GO:0000287 ... P0A6F5 N/A
    1064861 9wf6:b (2.99) BS01 MG N/A GO:0000287 ... P0A6F5 N/A
    1064862 9wf6:c (2.99) BS01 MG N/A GO:0000287 ... P0A6F5 N/A
    1064863 9wfa:A (2.64) BS01 RET N/A N/A N/A 41318824
    1064864 9wfh:A (2.0) BS01 CA N/A N/A B3TLD6 41204437
    1064865 9wfh:B (2.0) BS01 CA N/A N/A B3TLD6 41204437
    1064866 9wfp:A (4.1) BS01 GDN N/A GO:0000325 ... Q42093 N/A
    1064867 9wgz:A (1.857) BS01 FE N/A N/A P17752 41460668
    1064868 9wh7:A (2.49) BS01 1SY N/A N/A N/A N/A
    1064869 9wh7:B (2.49) BS01 1SY N/A N/A N/A N/A
    1064870 9wh8:B (1.9) BS01 A1AZ0 N/A N/A Q86WV6 N/A
    1064871 9wh9:A (1.81) BS01 A1AZ0 N/A N/A N/A N/A
    1064872 9wh9:B (1.81) BS01 A1AZ0 N/A N/A N/A N/A
    1064873 9wha:A (1.6) BS01 1SY N/A N/A N/A N/A
    1064874 9wha:B (1.6) BS01 1SY N/A N/A N/A N/A
    1064875 9whe:A (1.82) BS01 A1MBL N/A GO:0008233 ... P0DTD1 N/A
    1064876 9whf:A (1.65) BS01 A1AZ0 N/A N/A N/A N/A
    1064877 9wiq:A (1.9) BS01 NXL N/A N/A N/A N/A
    1064878 9wir:A (2.1) BS01 NXL N/A N/A N/A N/A
    1064879 9wir:B (2.1) BS01 NXL N/A N/A N/A N/A
    1064880 9wis:A (2.11) BS01 NXL N/A N/A N/A N/A
    1064881 9wis:B (2.11) BS01 NXL N/A N/A N/A N/A
    1064882 9wjh:A (3.4) BS01 A1EWS N/A GO:0005277 ... Q16572 41172986
    1064883 9wji:A (3.4) BS01 A1EWW N/A GO:0005277 ... Q16572 41172986
    1064884 9wjr:F (2.87) BS01 MAN N/A GO:0005886 ... A0A1I4FTQ3 41562606
    1064885 9wjr:G (2.87) BS01 MAN N/A GO:0005886 ... A0A3D4RH01 41562606
    1064886 9wjr:S (2.87) BS01 MAN N/A GO:0005886 ... A0A1I4FTQ3 41562606
    1064887 9wjr:T (2.87) BS01 MAN N/A GO:0005886 ... A0A3D4RH01 41562606
    1064888 9wjr:Y (2.87) BS01 MAN N/A GO:0005886 ... A0A1I4FTQ3 41562606
    1064889 9wjr:Z (2.87) BS01 MAN N/A GO:0005886 ... A0A3D4RH01 41562606
    1064890 9wju:G (3.81) BS01 MAN N/A GO:0005886 ... A0A3D4RH01 41562606
    1064891 9wju:S (3.81) BS01 MAN N/A GO:0005886 ... A0A1I4FTQ3 41562606
    1064892 9wju:T (3.81) BS01 MAN N/A GO:0005886 ... A0A3D4RH01 41562606
    1064893 9wju:Y (3.81) BS01 MAN N/A GO:0005886 ... A0A1I4FTQ3 41562606
    1064894 9wju:Z (3.81) BS01 MAN N/A GO:0005886 ... A0A3D4RH01 41562606
    1064895 9wjw:F (2.96) BS01 MAN N/A GO:0005886 ... S5LAD9 41562606
    1064896 9wjw:G (2.96) BS01 MAN N/A GO:0005886 ... A0A1E8EBU8 41562606
    1064897 9wjw:S (2.96) BS01 MAN N/A GO:0005886 ... S5LAD9 41562606
    1064898 9wjw:T (2.96) BS01 MAN N/A GO:0005886 ... A0A1E8EBU8 41562606
    1064899 9wjw:Y (2.96) BS01 MAN N/A GO:0005886 ... S5LAD9 41562606
    1064900 9wjw:Z (2.96) BS01 MAN N/A GO:0005886 ... A0A1E8EBU8 41562606
    1064901 9wlv:AAA (1.9) BS01 4HP N/A GO:0003824 ... A0A1H2MDS2 41039777
    1064902 9wlv:BBB (1.9) BS01 4HP N/A GO:0003824 ... A0A1H2MDS2 41039777
    1064903 9wlv:BBB (1.9) BS02 3HR N/A GO:0003824 ... A0A1H2MDS2 41039777
    1064904 9wma:A (1.57) BS01 HEM N/A N/A P14779 N/A
    1064905 9wma:B (1.57) BS01 HEM N/A N/A P14779 N/A
    1064906 9wmb:A (1.8) BS01 HEM N/A N/A P14779 N/A
    1064907 9wmb:A (1.8) BS02 ZER N/A N/A P14779 N/A
    1064908 9wmb:B (1.8) BS01 HEM N/A N/A P14779 N/A
    1064909 9wmb:B (1.8) BS02 ZER N/A N/A P14779 N/A
    1064910 9wmc:A (2.09) BS01 HEM N/A N/A P14779 N/A
    1064911 9wmc:A (2.09) BS02 36J N/A N/A P14779 N/A
    1064912 9wmc:B (2.09) BS01 HEM N/A N/A P14779 N/A
    1064913 9wmc:B (2.09) BS02 36J N/A N/A P14779 N/A
    1064914 9wml:A (2.79) BS01 8LJ N/A N/A N/A N/A
    1064915 9wml:A (2.79) BS02 CLR N/A N/A N/A N/A
    1064916 9wml:A (2.79) BS03 CLR N/A N/A N/A N/A
    1064917 9wml:A (2.79) BS04 Y01 N/A N/A N/A N/A
    1064918 9wml:A (2.79) BS05 Y01 N/A N/A N/A N/A
    1064919 9wml:A (2.79) BS06 CLR N/A N/A N/A N/A
    1064920 9wmm:A (2.8) BS01 CLR N/A N/A N/A N/A
    1064921 9wmm:A (2.8) BS02 Y01 N/A N/A N/A N/A
    1064922 9wmm:A (2.8) BS03 Y01 N/A N/A N/A N/A
    1064923 9wmm:A (2.8) BS04 CLR N/A N/A N/A N/A
    1064924 9wmm:A (2.8) BS05 Y01 N/A N/A N/A N/A
    1064925 9wmm:A (2.8) BS06 Y01 N/A N/A N/A N/A
    1064926 9wmm:A (2.8) BS07 CLR N/A N/A N/A N/A
    1064927 9wmn:A (2.91) BS01 Y01 N/A N/A N/A N/A
    1064928 9wmn:A (2.91) BS02 Y01 N/A N/A N/A N/A
    1064929 9wmn:A (2.91) BS03 CLR N/A N/A N/A N/A
    1064930 9wmn:A (2.91) BS04 Y01 N/A N/A N/A N/A
    1064931 9wmn:A (2.91) BS05 Y01 N/A N/A N/A N/A
    1064932 9wmn:A (2.91) BS06 CLR N/A N/A N/A N/A
    1064933 9wmo:A (3.01) BS01 CLR N/A N/A N/A N/A
    1064934 9wmo:A (3.01) BS02 CLR N/A N/A N/A N/A
    1064935 9wmo:A (3.01) BS03 CLR N/A N/A N/A N/A
    1064936 9wmo:A (3.01) BS04 CLR N/A N/A N/A N/A
    1064937 9wmo:A (3.01) BS05 CLR N/A N/A N/A N/A
    1064938 9wmp:A (2.91) BS01 CLR N/A N/A N/A N/A
    1064939 9wmp:A (2.91) BS02 CLR N/A N/A N/A N/A
    1064940 9wmp:A (2.91) BS03 CLR N/A N/A N/A N/A
    1064941 9wmp:A (2.91) BS04 CLR N/A N/A N/A N/A
    1064942 9wmp:A (2.91) BS05 CLR N/A N/A N/A N/A
    1064943 9wmp:A (2.91) BS06 CLR N/A N/A N/A N/A
    1064944 9wms:A (3.4) BS01 rna N/A GO:0000785 ... C4R4Y0 41604494
    1064945 9wms:A (3.4) BS02 dna N/A GO:0000785 ... C4R4Y0 41604494
    1064946 9wms:A (3.4) BS03 ZN N/A GO:0000785 ... C4R4Y0 41604494
    1064947 9wms:A (3.4) BS04 ZN N/A GO:0000785 ... C4R4Y0 41604494
    1064948 9wms:A (3.4) BS05 MG N/A GO:0000785 ... C4R4Y0 41604494
    1064949 9wms:B (3.4) BS01 dna N/A GO:0001172 ... C4QZQ7 41604494
    1064950 9wms:B (3.4) BS02 rna N/A GO:0001172 ... C4QZQ7 41604494
    1064951 9wms:B (3.4) BS03 dna N/A GO:0001172 ... C4QZQ7 41604494
    1064952 9wms:B (3.4) BS04 ZN N/A GO:0001172 ... C4QZQ7 41604494
    1064953 9wms:C (3.4) BS01 ZN N/A GO:0000428 ... C4R7L2 41604494
    1064954 9wms:I (3.4) BS01 ZN N/A GO:0001193 ... F2QPE6 41604494
    1064955 9wms:I (3.4) BS02 ZN N/A GO:0001193 ... F2QPE6 41604494
    1064956 9wms:J (3.4) BS01 ZN N/A GO:0003899 ... C4R009 41604494
    1064957 9wms:L (3.4) BS01 ZN N/A GO:0005634 ... F2QMI1 41604494
    1064958 9wms:M (3.4) BS01 ZN N/A GO:0000993 ... C4QZ45 41604494
    1064959 9wms:V (3.4) BS01 ZN N/A GO:0000182 ... C4R0E6 41604494
    1064960 9wms:W (3.4) BS01 rna N/A GO:0003711 ... C4R370 41604494
    1064961 9wms:W (3.4) BS02 dna N/A GO:0003711 ... C4R370 41604494
    1064962 9wms:a (3.4) BS01 dna N/A GO:0000776 ... P84243 41604494
    1064963 9wms:a (3.4) BS02 dna N/A GO:0000776 ... P84243 41604494
    1064964 9wms:b (3.4) BS01 dna N/A GO:0000781 ... P62805 41604494
    1064965 9wms:b (3.4) BS02 dna N/A GO:0000781 ... P62805 41604494
    1064966 9wms:c (3.4) BS01 dna N/A GO:0000786 ... P04908 41604494
    1064967 9wms:c (3.4) BS02 dna N/A GO:0000786 ... P04908 41604494
    1064968 9wms:d (3.4) BS01 dna N/A GO:0000786 ... P06899 41604494
    1064969 9wms:e (3.4) BS01 dna N/A GO:0000776 ... P84243 41604494
    1064970 9wms:e (3.4) BS02 dna N/A GO:0000776 ... P84243 41604494
    1064971 9wms:f (3.4) BS01 dna N/A GO:0000781 ... P62805 41604494
    1064972 9wms:f (3.4) BS02 dna N/A GO:0000781 ... P62805 41604494
    1064973 9wms:m (3.4) BS01 rna N/A GO:0000082 ... C4R7H2 41604494
    1064974 9wms:s (3.4) BS01 ZN N/A GO:0003723 ... C4QY01 41604494
    1064975 9wms:s (3.4) BS02 ZN N/A GO:0003723 ... C4QY01 41604494
    1064976 9wms:s (3.4) BS03 ZN N/A GO:0003723 ... C4QY01 41604494
    1064977 9wms:s (3.4) BS04 SAH N/A GO:0003723 ... C4QY01 41604494
    1064978 9wmt:A (3.59) BS01 rna N/A GO:0000785 ... C4R4Y0 41604494
    1064979 9wmt:A (3.59) BS02 dna N/A GO:0000785 ... C4R4Y0 41604494
    1064980 9wmt:A (3.59) BS03 ZN N/A GO:0000785 ... C4R4Y0 41604494
    1064981 9wmt:A (3.59) BS04 ZN N/A GO:0000785 ... C4R4Y0 41604494
    1064982 9wmt:A (3.59) BS05 MG N/A GO:0000785 ... C4R4Y0 41604494
    1064983 9wmt:B (3.59) BS01 dna N/A GO:0001172 ... C4QZQ7 41604494
    1064984 9wmt:B (3.59) BS02 rna N/A GO:0001172 ... C4QZQ7 41604494
    1064985 9wmt:B (3.59) BS03 dna N/A GO:0001172 ... C4QZQ7 41604494
    1064986 9wmt:B (3.59) BS04 ZN N/A GO:0001172 ... C4QZQ7 41604494
    1064987 9wmt:C (3.59) BS01 ZN N/A GO:0000428 ... C4R7L2 41604494
    1064988 9wmt:I (3.59) BS01 ZN N/A GO:0001193 ... F2QPE6 41604494
    1064989 9wmt:I (3.59) BS02 ZN N/A GO:0001193 ... F2QPE6 41604494
    1064990 9wmt:J (3.59) BS01 ZN N/A GO:0003899 ... C4R009 41604494
    1064991 9wmt:L (3.59) BS01 ZN N/A GO:0005634 ... F2QMI1 41604494
    1064992 9wmt:M (3.59) BS01 ZN N/A GO:0000993 ... C4QZ45 41604494
    1064993 9wmt:V (3.59) BS01 ZN N/A GO:0000182 ... C4R0E6 41604494
    1064994 9wmt:W (3.59) BS01 rna N/A GO:0003711 ... C4R370 41604494
    1064995 9wmt:a (3.59) BS01 dna N/A GO:0000776 ... P84243 41604494
    1064996 9wmt:a (3.59) BS02 dna N/A GO:0000776 ... P84243 41604494
    1064997 9wmt:b (3.59) BS01 dna N/A GO:0000781 ... P62805 41604494
    1064998 9wmt:b (3.59) BS02 dna N/A GO:0000781 ... P62805 41604494
    1064999 9wmt:c (3.59) BS01 dna N/A GO:0000786 ... P04908 41604494
    1065000 9wmt:c (3.59) BS02 dna N/A GO:0000786 ... P04908 41604494

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).