SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1065001 9wmt:d (3.59) BS01 dna N/A GO:0000786 ... P06899 41604494
    1065002 9wmt:d (3.59) BS02 dna N/A GO:0000786 ... P06899 41604494
    1065003 9wmt:e (3.59) BS01 dna N/A GO:0000776 ... P84243 41604494
    1065004 9wmt:e (3.59) BS02 dna N/A GO:0000776 ... P84243 41604494
    1065005 9wmt:f (3.59) BS01 dna N/A GO:0000781 ... P62805 41604494
    1065006 9wmt:f (3.59) BS02 dna N/A GO:0000781 ... P62805 41604494
    1065007 9wmt:m (3.59) BS01 rna N/A GO:0000082 ... C4R7H2 41604494
    1065008 9wmt:s (3.59) BS01 ZN N/A GO:0003723 ... C4QY01 41604494
    1065009 9wmt:s (3.59) BS02 ZN N/A GO:0003723 ... C4QY01 41604494
    1065010 9wmt:s (3.59) BS03 ZN N/A GO:0003723 ... C4QY01 41604494
    1065011 9wmt:s (3.59) BS04 SAH N/A GO:0003723 ... C4QY01 41604494
    1065012 9wmu:A (4.28) BS01 dna N/A GO:0000785 ... C4R4Y0 41604494
    1065013 9wmu:A (4.28) BS02 rna N/A GO:0000785 ... C4R4Y0 41604494
    1065014 9wmu:A (4.28) BS03 dna N/A GO:0000785 ... C4R4Y0 41604494
    1065015 9wmu:A (4.28) BS04 ZN N/A GO:0000785 ... C4R4Y0 41604494
    1065016 9wmu:A (4.28) BS05 ZN N/A GO:0000785 ... C4R4Y0 41604494
    1065017 9wmu:A (4.28) BS06 MG N/A GO:0000785 ... C4R4Y0 41604494
    1065018 9wmu:B (4.28) BS01 dna N/A GO:0001172 ... C4QZQ7 41604494
    1065019 9wmu:B (4.28) BS02 rna N/A GO:0001172 ... C4QZQ7 41604494
    1065020 9wmu:B (4.28) BS03 dna N/A GO:0001172 ... C4QZQ7 41604494
    1065021 9wmu:B (4.28) BS04 ZN N/A GO:0001172 ... C4QZQ7 41604494
    1065022 9wmu:C (4.28) BS01 ZN N/A GO:0000428 ... C4R7L2 41604494
    1065023 9wmu:I (4.28) BS01 ZN N/A GO:0001193 ... F2QPE6 41604494
    1065024 9wmu:I (4.28) BS02 ZN N/A GO:0001193 ... F2QPE6 41604494
    1065025 9wmu:J (4.28) BS01 ZN N/A GO:0003899 ... C4R009 41604494
    1065026 9wmu:L (4.28) BS01 ZN N/A GO:0005634 ... F2QMI1 41604494
    1065027 9wmu:M (4.28) BS01 ZN N/A GO:0000993 ... C4QZ45 41604494
    1065028 9wmu:V (4.28) BS01 ZN N/A GO:0000182 ... C4R0E6 41604494
    1065029 9wmu:a (4.28) BS01 dna N/A GO:0000776 ... P84243 41604494
    1065030 9wmu:a (4.28) BS02 dna N/A GO:0000776 ... P84243 41604494
    1065031 9wmu:b (4.28) BS01 dna N/A GO:0000781 ... P62805 41604494
    1065032 9wmu:b (4.28) BS02 dna N/A GO:0000781 ... P62805 41604494
    1065033 9wmu:c (4.28) BS01 dna N/A GO:0000786 ... P04908 41604494
    1065034 9wmu:c (4.28) BS02 dna N/A GO:0000786 ... P04908 41604494
    1065035 9wmu:d (4.28) BS01 dna N/A GO:0000786 ... P06899 41604494
    1065036 9wmu:d (4.28) BS02 dna N/A GO:0000786 ... P06899 41604494
    1065037 9wmu:e (4.28) BS01 dna N/A GO:0000776 ... P84243 41604494
    1065038 9wmu:e (4.28) BS02 dna N/A GO:0000776 ... P84243 41604494
    1065039 9wmu:f (4.28) BS01 dna N/A GO:0000781 ... P62805 41604494
    1065040 9wmu:f (4.28) BS02 dna N/A GO:0000781 ... P62805 41604494
    1065041 9wmu:g (4.28) BS01 dna N/A GO:0000786 ... P04908 41604494
    1065042 9wmu:g (4.28) BS02 dna N/A GO:0000786 ... P04908 41604494
    1065043 9wmu:h (4.28) BS01 dna N/A GO:0000786 ... P06899 41604494
    1065044 9wmu:h (4.28) BS02 dna N/A GO:0000786 ... P06899 41604494
    1065045 9wmu:m (4.28) BS01 rna N/A GO:0000082 ... C4R7H2 41604494
    1065046 9wmu:s (4.28) BS01 ZN N/A GO:0003723 ... C4QY01 41604494
    1065047 9wmu:s (4.28) BS02 ZN N/A GO:0003723 ... C4QY01 41604494
    1065048 9wmu:s (4.28) BS03 ZN N/A GO:0003723 ... C4QY01 41604494
    1065049 9wmu:s (4.28) BS04 SAH N/A GO:0003723 ... C4QY01 41604494
    1065050 9wmv:A (4.66) BS01 rna N/A GO:0000785 ... C4R4Y0 41604494
    1065051 9wmv:A (4.66) BS02 dna N/A GO:0000785 ... C4R4Y0 41604494
    1065052 9wmv:A (4.66) BS03 ZN N/A GO:0000785 ... C4R4Y0 41604494
    1065053 9wmv:A (4.66) BS04 ZN N/A GO:0000785 ... C4R4Y0 41604494
    1065054 9wmv:A (4.66) BS05 MG N/A GO:0000785 ... C4R4Y0 41604494
    1065055 9wmv:B (4.66) BS01 dna N/A GO:0001172 ... C4QZQ7 41604494
    1065056 9wmv:B (4.66) BS02 rna N/A GO:0001172 ... C4QZQ7 41604494
    1065057 9wmv:B (4.66) BS03 dna N/A GO:0001172 ... C4QZQ7 41604494
    1065058 9wmv:B (4.66) BS04 ZN N/A GO:0001172 ... C4QZQ7 41604494
    1065059 9wmv:C (4.66) BS01 ZN N/A GO:0000428 ... C4R7L2 41604494
    1065060 9wmv:I (4.66) BS01 ZN N/A GO:0001193 ... F2QPE6 41604494
    1065061 9wmv:I (4.66) BS02 ZN N/A GO:0001193 ... F2QPE6 41604494
    1065062 9wmv:J (4.66) BS01 ZN N/A GO:0003899 ... C4R009 41604494
    1065063 9wmv:L (4.66) BS01 ZN N/A GO:0005634 ... F2QMI1 41604494
    1065064 9wmv:M (4.66) BS01 ZN N/A GO:0000993 ... C4QZ45 41604494
    1065065 9wmv:V (4.66) BS01 ZN N/A GO:0000182 ... C4R0E6 41604494
    1065066 9wmv:a (4.66) BS01 dna N/A GO:0000776 ... P84243 41604494
    1065067 9wmv:a (4.66) BS02 dna N/A GO:0000776 ... P84243 41604494
    1065068 9wmv:b (4.66) BS01 dna N/A GO:0000781 ... P62805 41604494
    1065069 9wmv:b (4.66) BS02 dna N/A GO:0000781 ... P62805 41604494
    1065070 9wmv:c (4.66) BS01 dna N/A GO:0000786 ... P04908 41604494
    1065071 9wmv:c (4.66) BS02 dna N/A GO:0000786 ... P04908 41604494
    1065072 9wmv:d (4.66) BS01 dna N/A GO:0000786 ... P06899 41604494
    1065073 9wmv:d (4.66) BS02 dna N/A GO:0000786 ... P06899 41604494
    1065074 9wmv:e (4.66) BS01 dna N/A GO:0000776 ... P84243 41604494
    1065075 9wmv:e (4.66) BS02 dna N/A GO:0000776 ... P84243 41604494
    1065076 9wmv:f (4.66) BS01 dna N/A GO:0000781 ... P62805 41604494
    1065077 9wmv:f (4.66) BS02 dna N/A GO:0000781 ... P62805 41604494
    1065078 9wmv:g (4.66) BS01 dna N/A GO:0000786 ... P04908 41604494
    1065079 9wmv:g (4.66) BS02 dna N/A GO:0000786 ... P04908 41604494
    1065080 9wmv:h (4.66) BS01 dna N/A GO:0000786 ... P06899 41604494
    1065081 9wmv:h (4.66) BS02 dna N/A GO:0000786 ... P06899 41604494
    1065082 9wmv:m (4.66) BS01 rna N/A GO:0000082 ... C4R7H2 41604494
    1065083 9wmv:s (4.66) BS01 ZN N/A GO:0003723 ... C4QY01 41604494
    1065084 9wmv:s (4.66) BS02 ZN N/A GO:0003723 ... C4QY01 41604494
    1065085 9wmv:s (4.66) BS03 ZN N/A GO:0003723 ... C4QY01 41604494
    1065086 9wmv:s (4.66) BS04 SAH N/A GO:0003723 ... C4QY01 41604494
    1065087 9wmw:A (3.62) BS01 rna N/A GO:0000785 ... C4R4Y0 41604494
    1065088 9wmw:A (3.62) BS02 dna N/A GO:0000785 ... C4R4Y0 41604494
    1065089 9wmw:A (3.62) BS03 ZN N/A GO:0000785 ... C4R4Y0 41604494
    1065090 9wmw:A (3.62) BS04 ZN N/A GO:0000785 ... C4R4Y0 41604494
    1065091 9wmw:A (3.62) BS05 MG N/A GO:0000785 ... C4R4Y0 41604494
    1065092 9wmw:B (3.62) BS01 dna N/A GO:0001172 ... C4QZQ7 41604494
    1065093 9wmw:B (3.62) BS02 rna N/A GO:0001172 ... C4QZQ7 41604494
    1065094 9wmw:B (3.62) BS03 dna N/A GO:0001172 ... C4QZQ7 41604494
    1065095 9wmw:B (3.62) BS04 ZN N/A GO:0001172 ... C4QZQ7 41604494
    1065096 9wmw:C (3.62) BS01 ZN N/A GO:0000428 ... C4R7L2 41604494
    1065097 9wmw:I (3.62) BS01 ZN N/A GO:0001193 ... F2QPE6 41604494
    1065098 9wmw:I (3.62) BS02 ZN N/A GO:0001193 ... F2QPE6 41604494
    1065099 9wmw:J (3.62) BS01 ZN N/A GO:0003899 ... C4R009 41604494
    1065100 9wmw:L (3.62) BS01 ZN N/A GO:0005634 ... F2QMI1 41604494
    1065101 9wmw:M (3.62) BS01 ZN N/A GO:0000993 ... C4QZ45 41604494
    1065102 9wmw:V (3.62) BS01 ZN N/A GO:0000182 ... C4R0E6 41604494
    1065103 9wmw:W (3.62) BS01 rna N/A GO:0003711 ... C4R370 41604494
    1065104 9wmw:a (3.62) BS01 dna N/A GO:0000776 ... P84243 41604494
    1065105 9wmw:a (3.62) BS02 dna N/A GO:0000776 ... P84243 41604494
    1065106 9wmw:b (3.62) BS01 dna N/A GO:0000781 ... P62805 41604494
    1065107 9wmw:e (3.62) BS01 dna N/A GO:0000776 ... P84243 41604494
    1065108 9wmw:j (3.62) BS01 dna N/A GO:0005634 ... C4QYQ8 41604494
    1065109 9wmw:j (3.62) BS02 dna N/A GO:0005634 ... C4QYQ8 41604494
    1065110 9wmw:k (3.62) BS01 dna N/A GO:0005634 ... F2QNN8 41604494
    1065111 9wmw:k (3.62) BS02 dna N/A GO:0005634 ... F2QNN8 41604494
    1065112 9wmw:m (3.62) BS01 rna N/A GO:0000082 ... C4R7H2 41604494
    1065113 9wmw:m (3.62) BS02 peptide N/A GO:0000082 ... C4R7H2 41604494
    1065114 9wno:A (3.48) BS01 MJC N/A GO:0000030 ... Q6FXQ5 41295199
    1065115 9wno:A (3.48) BS02 Y01 N/A GO:0000030 ... Q6FXQ5 41295199
    1065116 9wnq:0 (2.59) BS01 rna N/A GO:0000027 ... P0A7M2 41099701
    1065117 9wnq:1 (2.59) BS01 rna N/A GO:0000027 ... P0A7M6 41099701
    1065118 9wnq:2 (2.59) BS01 rna N/A GO:0000027 ... P0AG51 41099701
    1065119 9wnq:4 (2.59) BS01 rna N/A GO:0000027 ... P0A7N4 41099701
    1065120 9wnq:5 (2.59) BS01 rna N/A GO:0000027 ... P0A7N9 41099701
    1065121 9wnq:6 (2.59) BS01 rna N/A GO:0002181 ... P0A7P5 41099701
    1065122 9wnq:7 (2.59) BS01 rna N/A GO:0002181 ... P0A7Q1 41099701
    1065123 9wnq:8 (2.59) BS01 rna N/A GO:0002181 ... P0A7Q6 41099701
    1065124 9wnq:8 (2.59) BS02 ZN N/A GO:0002181 ... P0A7Q6 41099701
    1065125 9wnq:B (2.59) BS01 rna N/A GO:0000028 ... P0A7V0 41099701
    1065126 9wnq:C (2.59) BS01 rna N/A GO:0000028 ... P0A7V3 41099701
    1065127 9wnq:C (2.59) BS02 rna N/A GO:0000028 ... P0A7V3 41099701
    1065128 9wnq:D (2.59) BS01 rna N/A GO:0000028 ... P0A7V8 41099701
    1065129 9wnq:E (2.59) BS01 rna N/A GO:0000028 ... P0A7W1 41099701
    1065130 9wnq:F (2.59) BS01 rna N/A GO:0002181 ... P02358 41099701
    1065131 9wnq:G (2.59) BS01 rna N/A GO:0000028 ... P02359 41099701
    1065132 9wnq:G (2.59) BS02 rna N/A GO:0000028 ... P02359 41099701
    1065133 9wnq:H (2.59) BS01 rna N/A GO:0000028 ... P0A7W7 41099701
    1065134 9wnq:I (2.59) BS01 rna N/A GO:0002181 ... P0A7X3 41099701
    1065135 9wnq:J (2.59) BS01 rna N/A GO:0000049 ... P0A7R5 41099701
    1065136 9wnq:K (2.59) BS01 rna N/A GO:0002181 ... P0A7R9 41099701
    1065137 9wnq:L (2.59) BS01 rna N/A GO:0000049 ... P0A7S3 41099701
    1065138 9wnq:M (2.59) BS01 rna N/A GO:0000049 ... P0A7S9 41099701
    1065139 9wnq:N (2.59) BS01 rna N/A GO:0000028 ... P0AG59 41099701
    1065140 9wnq:O (2.59) BS01 rna N/A GO:0000028 ... P0ADZ4 41099701
    1065141 9wnq:O (2.59) BS02 rna N/A GO:0000028 ... P0ADZ4 41099701
    1065142 9wnq:P (2.59) BS01 rna N/A GO:0000028 ... P0A7T3 41099701
    1065143 9wnq:Q (2.59) BS01 rna N/A GO:0000028 ... P0AG63 41099701
    1065144 9wnq:R (2.59) BS01 rna N/A GO:0002181 ... P0A7T7 41099701
    1065145 9wnq:S (2.59) BS01 rna N/A GO:0002181 ... P0A7U3 41099701
    1065146 9wnq:T (2.59) BS01 rna N/A GO:0000028 ... P0A7U7 41099701
    1065147 9wnq:U (2.59) BS01 rna N/A GO:0000028 ... P68679 41099701
    1065148 9wnq:c (2.59) BS01 rna N/A GO:0000027 ... P60422 41099701
    1065149 9wnq:d (2.59) BS01 rna N/A GO:0003735 ... C3SQU2 41099701
    1065150 9wnq:e (2.59) BS01 rna N/A GO:0001070 ... P60723 41099701
    1065151 9wnq:f (2.59) BS01 rna N/A GO:0000027 ... P62399 41099701
    1065152 9wnq:f (2.59) BS02 rna N/A GO:0000027 ... P62399 41099701
    1065153 9wnq:f (2.59) BS03 rna N/A GO:0000027 ... P62399 41099701
    1065154 9wnq:g (2.59) BS01 rna N/A GO:0000027 ... P0AG55 41099701
    1065155 9wnq:h (2.59) BS01 rna N/A GO:0002181 ... P0A7R1 41099701
    1065156 9wnq:k (2.59) BS01 rna N/A GO:0002181 ... P0AA10 41099701
    1065157 9wnq:l (2.59) BS01 rna N/A GO:0002181 ... P0ADY3 41099701
    1065158 9wnq:l (2.59) BS02 rna N/A GO:0002181 ... P0ADY3 41099701
    1065159 9wnq:m (2.59) BS01 rna N/A GO:0002181 ... P02413 41099701
    1065160 9wnq:n (2.59) BS01 rna N/A GO:0000027 ... P0ADY7 41099701
    1065161 9wnq:n (2.59) BS02 rna N/A GO:0000027 ... P0ADY7 41099701
    1065162 9wnq:o (2.59) BS01 rna N/A GO:0000027 ... P0AG44 41099701
    1065163 9wnq:p (2.59) BS01 rna N/A GO:0002181 ... P0C018 41099701
    1065164 9wnq:p (2.59) BS02 rna N/A GO:0002181 ... P0C018 41099701
    1065165 9wnq:q (2.59) BS01 rna N/A GO:0000027 ... P0A7K6 41099701
    1065166 9wnq:q (2.59) BS02 rna N/A GO:0000027 ... P0A7K6 41099701
    1065167 9wnq:r (2.59) BS01 rna N/A GO:0000027 ... P0A7L3 41099701
    1065168 9wnq:s (2.59) BS01 rna N/A GO:0002181 ... P0AG48 41099701
    1065169 9wnq:t (2.59) BS01 rna N/A GO:0002181 ... P61175 41099701
    1065170 9wnq:t (2.59) BS02 peptide N/A GO:0002181 ... P61175 41099701
    1065171 9wnq:u (2.59) BS01 rna N/A GO:0000027 ... P0ADZ0 41099701
    1065172 9wnq:v (2.59) BS01 rna N/A GO:0000027 ... P60624 41099701
    1065173 9wnq:w (2.59) BS01 rna N/A GO:0000027 ... P68919 41099701
    1065174 9wnq:y (2.59) BS01 rna N/A GO:0000027 ... P0A7L8 41099701
    1065175 9wnr:0 (2.76) BS01 rna N/A GO:0000027 ... P0A7M2 41099701
    1065176 9wnr:1 (2.76) BS01 rna N/A GO:0000027 ... P0A7M6 41099701
    1065177 9wnr:2 (2.76) BS01 rna N/A GO:0000027 ... P0AG51 41099701
    1065178 9wnr:4 (2.76) BS01 rna N/A GO:0000027 ... P0A7N4 41099701
    1065179 9wnr:5 (2.76) BS01 rna N/A GO:0000027 ... P0A7N9 41099701
    1065180 9wnr:6 (2.76) BS01 rna N/A GO:0002181 ... P0A7P5 41099701
    1065181 9wnr:7 (2.76) BS01 rna N/A GO:0002181 ... P0A7Q1 41099701
    1065182 9wnr:8 (2.76) BS01 rna N/A GO:0002181 ... P0A7Q6 41099701
    1065183 9wnr:8 (2.76) BS02 ZN N/A GO:0002181 ... P0A7Q6 41099701
    1065184 9wnr:B (2.76) BS01 rna N/A GO:0000028 ... P0A7V0 41099701
    1065185 9wnr:C (2.76) BS01 rna N/A GO:0000028 ... P0A7V3 41099701
    1065186 9wnr:C (2.76) BS02 rna N/A GO:0000028 ... P0A7V3 41099701
    1065187 9wnr:D (2.76) BS01 rna N/A GO:0000028 ... P0A7V8 41099701
    1065188 9wnr:E (2.76) BS01 rna N/A GO:0000028 ... P0A7W1 41099701
    1065189 9wnr:F (2.76) BS01 rna N/A GO:0002181 ... P02358 41099701
    1065190 9wnr:G (2.76) BS01 rna N/A GO:0000028 ... P02359 41099701
    1065191 9wnr:G (2.76) BS02 rna N/A GO:0000028 ... P02359 41099701
    1065192 9wnr:H (2.76) BS01 rna N/A GO:0000028 ... P0A7W7 41099701
    1065193 9wnr:I (2.76) BS01 rna N/A GO:0002181 ... P0A7X3 41099701
    1065194 9wnr:J (2.76) BS01 rna N/A GO:0000049 ... P0A7R5 41099701
    1065195 9wnr:K (2.76) BS01 rna N/A GO:0002181 ... P0A7R9 41099701
    1065196 9wnr:L (2.76) BS01 rna N/A GO:0000049 ... P0A7S3 41099701
    1065197 9wnr:M (2.76) BS01 rna N/A GO:0000049 ... P0A7S9 41099701
    1065198 9wnr:N (2.76) BS01 rna N/A GO:0000028 ... P0AG59 41099701
    1065199 9wnr:O (2.76) BS01 rna N/A GO:0000028 ... P0ADZ4 41099701
    1065200 9wnr:O (2.76) BS02 rna N/A GO:0000028 ... P0ADZ4 41099701

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).