SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    106401 2uua:Q (2.9) BS01 rna ? GO:0003735 ... P0DOY7 17496902
    106402 2uua:Q (2.9) BS02 MG ? GO:0003735 ... P0DOY7 17496902
    106403 2uua:R (2.9) BS01 rna ? GO:0003735 ... Q5SLQ0 17496902
    106404 2uua:S (2.9) BS01 rna ? GO:0000028 ... Q5SHP2 17496902
    106405 2uua:T (2.9) BS01 rna ? GO:0003723 ... P80380 17496902
    106406 2uub:B (2.8) BS01 rna ? GO:0003735 ... P80371 17496902
    106407 2uub:B (2.8) BS02 MG ? GO:0003735 ... P80371 17496902
    106408 2uub:C (2.8) BS01 rna ? GO:0003676 ... P80372 17496902
    106409 2uub:D (2.8) BS01 rna ? GO:0003723 ... P80373 17496902
    106410 2uub:D (2.8) BS02 MG ? GO:0003723 ... P80373 17496902
    106411 2uub:E (2.8) BS01 rna ? GO:0003723 ... Q5SHQ5 17496902
    106412 2uub:F (2.8) BS01 rna ? GO:0003735 ... Q5SLP8 17496902
    106413 2uub:F (2.8) BS02 MG ? GO:0003735 ... Q5SLP8 17496902
    106414 2uub:G (2.8) BS01 rna ? GO:0000049 ... P17291 17496902
    106415 2uub:G (2.8) BS02 MG ? GO:0000049 ... P17291 17496902
    106416 2uub:H (2.8) BS01 rna ? GO:0003735 ... P0DOY9 17496902
    106417 2uub:H (2.8) BS02 MG ? GO:0003735 ... P0DOY9 17496902
    106418 2uub:I (2.8) BS01 rna ? GO:0003723 ... P80374 17496902
    106419 2uub:I (2.8) BS02 MG ? GO:0003723 ... P80374 17496902
    106420 2uub:J (2.8) BS01 rna ? GO:0000049 ... Q5SHN7 17496902
    106421 2uub:K (2.8) BS01 rna ? GO:0003735 ... P80376 17496902
    106422 2uub:L (2.8) BS01 rna ? GO:0000049 ... Q5SHN3 17496902
    106423 2uub:M (2.8) BS01 rna ? GO:0000049 ... P80377 17496902
    106424 2uub:M (2.8) BS02 MG ? GO:0000049 ... P80377 17496902
    106425 2uub:N (2.8) BS01 rna ? GO:0003735 ... P0DOY6 17496902
    106426 2uub:N (2.8) BS02 ZN ? GO:0003735 ... P0DOY6 17496902
    106427 2uub:O (2.8) BS01 rna ? GO:0003735 ... Q5SJ76 17496902
    106428 2uub:P (2.8) BS01 rna ? GO:0003735 ... Q5SJH3 17496902
    106429 2uub:Q (2.8) BS01 rna ? GO:0003735 ... P0DOY7 17496902
    106430 2uub:Q (2.8) BS02 MG ? GO:0003735 ... P0DOY7 17496902
    106431 2uub:R (2.8) BS01 rna ? GO:0003735 ... Q5SLQ0 17496902
    106432 2uub:S (2.8) BS01 rna ? GO:0000028 ... Q5SHP2 17496902
    106433 2uub:T (2.8) BS01 rna ? GO:0003723 ... P80380 17496902
    106434 2uuc:B (3.1) BS01 rna ? GO:0003735 ... P80371 17496902
    106435 2uuc:B (3.1) BS02 MG ? GO:0003735 ... P80371 17496902
    106436 2uuc:C (3.1) BS01 rna ? GO:0003676 ... P80372 17496902
    106437 2uuc:D (3.1) BS01 rna ? GO:0003723 ... P80373 17496902
    106438 2uuc:D (3.1) BS02 MG ? GO:0003723 ... P80373 17496902
    106439 2uuc:E (3.1) BS01 rna ? GO:0003723 ... Q5SHQ5 17496902
    106440 2uuc:F (3.1) BS01 rna ? GO:0003735 ... Q5SLP8 17496902
    106441 2uuc:G (3.1) BS01 rna ? GO:0000049 ... P17291 17496902
    106442 2uuc:H (3.1) BS01 rna ? GO:0003735 ... P0DOY9 17496902
    106443 2uuc:I (3.1) BS01 rna ? GO:0003723 ... P80374 17496902
    106444 2uuc:J (3.1) BS01 rna ? GO:0000049 ... Q5SHN7 17496902
    106445 2uuc:K (3.1) BS01 rna ? GO:0003735 ... P80376 17496902
    106446 2uuc:L (3.1) BS01 rna ? GO:0000049 ... Q5SHN3 17496902
    106447 2uuc:L (3.1) BS02 MG ? GO:0000049 ... Q5SHN3 17496902
    106448 2uuc:M (3.1) BS01 rna ? GO:0000049 ... P80377 17496902
    106449 2uuc:M (3.1) BS02 MG ? GO:0000049 ... P80377 17496902
    106450 2uuc:N (3.1) BS01 rna ? GO:0003735 ... P0DOY6 17496902
    106451 2uuc:N (3.1) BS02 ZN ? GO:0003735 ... P0DOY6 17496902
    106452 2uuc:O (3.1) BS01 rna ? GO:0003735 ... Q5SJ76 17496902
    106453 2uuc:P (3.1) BS01 rna ? GO:0003735 ... Q5SJH3 17496902
    106454 2uuc:Q (3.1) BS01 rna ? GO:0003735 ... P0DOY7 17496902
    106455 2uuc:Q (3.1) BS02 MG ? GO:0003735 ... P0DOY7 17496902
    106456 2uuc:R (3.1) BS01 rna ? GO:0003735 ... Q5SLQ0 17496902
    106457 2uuc:S (3.1) BS01 rna ? GO:0000028 ... Q5SHP2 17496902
    106458 2uuc:T (3.1) BS01 rna ? GO:0003723 ... P80380 17496902
    106459 2uud:H (2.9) BS01 peptide N/A N/A N/A 16682055
    106460 2uud:H (2.9) BS02 PHX N/A N/A N/A 16682055
    106461 2uud:J (2.9) BS01 PHX N/A N/A N/A 16682055
    106462 2uue:A (2.06) BS01 MTZ 2.7.11.22 GO:0000082 ... P24941 17051658
    106463 2uue:B (2.06) BS01 peptide ? GO:0016538 ... P20248 17051658
    106464 2uue:B (2.06) BS02 GVC ? GO:0016538 ... P20248 17051658
    106465 2uue:C (2.06) BS01 MTZ 2.7.11.22 GO:0000082 ... P24941 17051658
    106466 2uue:D (2.06) BS01 peptide ? GO:0016538 ... P20248 17051658
    106467 2uue:D (2.06) BS02 GVC ? GO:0016538 ... P20248 17051658
    106468 2uuf:B (1.26) BS01 peptide 3.4.21.5 GO:0004252 ... P00734 17642517
    106469 2uuf:B (1.26) BS02 peptide 3.4.21.5 GO:0004252 ... P00734 17642517
    106470 2uuf:B (1.26) BS03 CA 3.4.21.5 GO:0004252 ... P00734 17642517
    106471 2uuh:A (2.15) BS01 GSH 2.5.1.-
    4.4.1.20
    GO:0004364 ... Q16873 17632546
    106472 2uuj:B (1.32) BS01 peptide 3.4.21.5 GO:0004252 ... P00734 17642517
    106473 2uuj:B (1.32) BS02 peptide 3.4.21.5 GO:0004252 ... P00734 17642517
    106474 2uuj:B (1.32) BS03 CA 3.4.21.5 GO:0004252 ... P00734 17642517
    106475 2uuj:B (1.32) BS04 896 3.4.21.5 GO:0004252 ... P00734 17642517
    106476 2uuk:B (1.39) BS01 peptide 3.4.21.5 GO:0004252 ... P00734 17642517
    106477 2uuk:B (1.39) BS02 peptide 3.4.21.5 GO:0004252 ... P00734 17642517
    106478 2uuk:B (1.39) BS03 CA 3.4.21.5 GO:0004252 ... P00734 17642517
    106479 2uuk:B (1.39) BS04 897 3.4.21.5 GO:0004252 ... P00734 17642517
    106480 2uul:B (3.1) BS01 BLA N/A GO:0015979 ... N/A N/A
    106481 2uul:B (3.1) BS02 BLA N/A GO:0015979 ... N/A N/A
    106482 2uul:D (3.1) BS01 BLA N/A GO:0015979 ... N/A N/A
    106483 2uul:G (3.1) BS01 BLA N/A GO:0015979 ... N/A N/A
    106484 2uum:A (3.0) BS01 BLA ? GO:0015979 ... P72509 N/A
    106485 2uum:B (3.0) BS01 BLA ? GO:0015979 ... P72508 N/A
    106486 2uum:B (3.0) BS02 BLA ? GO:0015979 ... P72508 N/A
    106487 2uum:C (3.0) BS01 BLA ? GO:0015979 ... P72509 N/A
    106488 2uum:D (3.0) BS01 BLA ? GO:0015979 ... P72508 N/A
    106489 2uum:D (3.0) BS02 BLA ? GO:0015979 ... P72508 N/A
    106490 2uum:E (3.0) BS01 BLA ? GO:0015979 ... P72509 N/A
    106491 2uum:F (3.0) BS01 BLA ? GO:0015979 ... P72508 N/A
    106492 2uum:F (3.0) BS02 BLA ? GO:0015979 ... P72508 N/A
    106493 2uum:G (3.0) BS01 BLA ? GO:0015979 ... P72509 N/A
    106494 2uum:H (3.0) BS01 BLA ? GO:0015979 ... P72508 N/A
    106495 2uum:H (3.0) BS02 BLA ? GO:0015979 ... P72508 N/A
    106496 2uum:I (3.0) BS01 BLA ? GO:0015979 ... P72509 N/A
    106497 2uum:I (3.0) BS02 BLA ? GO:0015979 ... P72509 N/A
    106498 2uum:J (3.0) BS01 BLA ? GO:0015979 ... P72508 N/A
    106499 2uum:J (3.0) BS02 BLA ? GO:0015979 ... P72508 N/A
    106500 2uum:K (3.0) BS01 BLA ? GO:0015979 ... P72509 N/A
    106501 2uum:L (3.0) BS01 BLA ? GO:0015979 ... P72508 N/A
    106502 2uum:L (3.0) BS02 BLA ? GO:0015979 ... P72508 N/A
    106503 2uum:L (3.0) BS03 BLA ? GO:0015979 ... P72508 N/A
    106504 2uum:M (3.0) BS01 BLA ? GO:0015979 ... P72509 N/A
    106505 2uum:N (3.0) BS01 BLA ? GO:0015979 ... P72508 N/A
    106506 2uum:N (3.0) BS02 BLA ? GO:0015979 ... P72508 N/A
    106507 2uum:O (3.0) BS01 BLA ? GO:0015979 ... P72509 N/A
    106508 2uum:P (3.0) BS01 BLA ? GO:0015979 ... P72508 N/A
    106509 2uum:P (3.0) BS02 BLA ? GO:0015979 ... P72508 N/A
    106510 2uum:Q (3.0) BS01 BLA ? GO:0015979 ... P72509 N/A
    106511 2uum:R (3.0) BS01 BLA ? GO:0015979 ... P72508 N/A
    106512 2uum:S (3.0) BS01 BLA ? GO:0015979 ... P72509 N/A
    106513 2uum:T (3.0) BS01 BLA ? GO:0015979 ... P72508 N/A
    106514 2uum:T (3.0) BS02 BLA ? GO:0015979 ... P72508 N/A
    106515 2uum:U (3.0) BS01 BLA ? GO:0015979 ... P72509 N/A
    106516 2uum:V (3.0) BS01 BLA ? GO:0015979 ... P72508 N/A
    106517 2uum:V (3.0) BS02 BLA ? GO:0015979 ... P72508 N/A
    106518 2uum:W (3.0) BS01 BLA ? GO:0015979 ... P72509 N/A
    106519 2uum:X (3.0) BS01 BLA ? GO:0015979 ... P72508 N/A
    106520 2uum:X (3.0) BS02 BLA ? GO:0015979 ... P72508 N/A
    106521 2uun:B (3.0) BS01 BLA N/A GO:0015979 ... N/A N/A
    106522 2uun:G (3.0) BS01 BLA N/A GO:0015979 ... N/A N/A
    106523 2uuo:A (2.5) BS01 LK3 6.3.2.9 GO:0005515 ... P14900 19007109 MOAD: ic50=170uM
    BindingDB: IC50=170000nM
    106524 2uup:A (1.88) BS01 LK4 6.3.2.9 GO:0005515 ... P14900 19007109 MOAD: ic50=105uM
    BindingDB: IC50=105000nM
    106525 2uuq:A (1.46) BS01 HEM 1.14.-.- GO:0004497 ... P9WPN5 18089574
    106526 2uur:A (1.8) BS01 ZN ? N/A P20849 17553797
    106527 2uus:A (2.2) BS01 GU4 ? GO:0008083 ... P61149 18540049
    106528 2uus:A (2.2) BS02 YYJ ? GO:0008083 ... P61149 18540049
    106529 2uuu:A (1.95) BS01 FAD 2.5.1.26 GO:0003824 ... O96759 17562315
    106530 2uuu:A (1.95) BS02 PL3 2.5.1.26 GO:0003824 ... O96759 17562315
    106531 2uuu:B (1.95) BS01 FAD 2.5.1.26 GO:0003824 ... O96759 17562315
    106532 2uuu:B (1.95) BS02 PL3 2.5.1.26 GO:0003824 ... O96759 17562315
    106533 2uuu:C (1.95) BS01 FAD 2.5.1.26 GO:0003824 ... O96759 17562315
    106534 2uuu:C (1.95) BS02 PL3 2.5.1.26 GO:0003824 ... O96759 17562315
    106535 2uuu:D (1.95) BS01 FAD 2.5.1.26 GO:0003824 ... O96759 17562315
    106536 2uuu:D (1.95) BS02 PL3 2.5.1.26 GO:0003824 ... O96759 17562315
    106537 2uuv:A (1.99) BS01 FAD 2.5.1.26 GO:0003824 ... O96759 17562315
    106538 2uuv:A (1.99) BS02 PL3 2.5.1.26 GO:0003824 ... O96759 17562315
    106539 2uuv:B (1.99) BS01 FAD 2.5.1.26 GO:0003824 ... O96759 17562315
    106540 2uuv:B (1.99) BS02 PL3 2.5.1.26 GO:0003824 ... O96759 17562315
    106541 2uuv:C (1.99) BS01 FAD 2.5.1.26 GO:0003824 ... O96759 17562315
    106542 2uuv:D (1.99) BS01 FAD 2.5.1.26 GO:0003824 ... O96759 17562315
    106543 2uuv:D (1.99) BS02 PL3 2.5.1.26 GO:0003824 ... O96759 17562315
    106544 2uuy:A (1.15) BS01 CA 3.4.21.4 GO:0004175 ... P00760 17391695
    106545 2uv0:E (1.8) BS01 OHN ? N/A P25084 17363368 BindingDB: EC50=139nM
    106546 2uv0:F (1.8) BS01 OHN ? N/A P25084 17363368 BindingDB: EC50=139nM
    106547 2uv0:G (1.8) BS01 OHN ? N/A P25084 17363368 BindingDB: EC50=139nM
    106548 2uv0:H (1.8) BS01 OHN ? N/A P25084 17363368 BindingDB: EC50=139nM
    106549 2uv2:A (2.3) BS01 GVD 2.7.11.1 GO:0004672 ... Q9H2G2 18239682
    106550 2uv4:A (1.33) BS01 AMP ? N/A P54619 17452784
    106551 2uv5:A (1.69) BS01 AMZ ? N/A P54619 17452784
    106552 2uv6:A (2.0) BS01 AMP ? N/A P54619 17452784
    106553 2uv7:A (2.0) BS01 AMP ? N/A P54619 17452784
    106554 2uv8:G (3.1) BS01 FMN 1.3.1.9
    2.3.1.38
    2.3.1.39
    2.3.1.86
    3.1.2.14
    4.2.1.59
    GO:0004312 ... P07149 17431182
    106555 2uv8:H (3.1) BS01 FMN 1.3.1.9
    2.3.1.38
    2.3.1.39
    2.3.1.86
    3.1.2.14
    4.2.1.59
    GO:0004312 ... P07149 17431182
    106556 2uv8:I (3.1) BS01 FMN 1.3.1.9
    2.3.1.38
    2.3.1.39
    2.3.1.86
    3.1.2.14
    4.2.1.59
    GO:0004312 ... P07149 17431182
    106557 2uvf:A (2.1) BS01 ADA ? GO:0004650 ... O68975 17397864
    106558 2uvf:A (2.1) BS02 ADA ? GO:0004650 ... O68975 17397864
    106559 2uvh:A (2.2) BS01 ADA N/A N/A N/A 17451747
    106560 2uvh:A (2.2) BS02 ADA N/A N/A N/A 17451747
    106561 2uvi:A (2.3) BS01 ADA N/A N/A N/A 17451747
    106562 2uvi:A (2.3) BS02 AQA N/A N/A N/A 17451747
    106563 2uvj:A (1.8) BS01 ADA N/A N/A N/A 17451747
    106564 2uvj:A (1.8) BS02 ADA N/A N/A N/A 17451747
    106565 2uvj:A (1.8) BS03 ADA N/A N/A N/A 17451747
    106566 2uvl:A (1.91) BS01 ZN 2.3.2.27 N/A Q13489 19923725
    106567 2uvl:B (1.91) BS01 ZN 2.3.2.27 N/A Q13489 19923725
    106568 2uvm:A (1.94) BS01 GVF 2.7.11.1 N/A P31749 17432822 BindingDB: Ki=80nM
    106569 2uvn:A (3.0) BS01 HEM 1.14.-.- GO:0004497 ... P9WPN5 18089574
    106570 2uvn:A (3.0) BS02 ECN 1.14.-.- GO:0004497 ... P9WPN5 18089574
    106571 2uvn:B (3.0) BS01 HEM 1.14.-.- GO:0004497 ... P9WPN5 18089574
    106572 2uvn:B (3.0) BS02 HEM 1.14.-.- GO:0004497 ... P9WPN5 18089574
    106573 2uvn:B (3.0) BS03 ECN 1.14.-.- GO:0004497 ... P9WPN5 18089574
    106574 2uvp:B (1.7) BS01 CA ? GO:0005515 ... O25828 17683397
    106575 2uvp:C (1.7) BS01 CA ? GO:0005515 ... O25828 17683397
    106576 2uvq:A (3.0) BS01 ADP 2.7.1.48 GO:0005524 ... Q9HA47 N/A
    106577 2uvr:A (2.9) BS01 dna 2.7.7.7 GO:0000287 ... Q97W02 17468100
    106578 2uvr:A (2.9) BS02 dna 2.7.7.7 GO:0000287 ... Q97W02 17468100
    106579 2uvr:A (2.9) BS03 DGT 2.7.7.7 GO:0000287 ... Q97W02 17468100
    106580 2uvr:A (2.9) BS04 CA 2.7.7.7 GO:0000287 ... Q97W02 17468100
    106581 2uvr:A (2.9) BS05 CA 2.7.7.7 GO:0000287 ... Q97W02 17468100
    106582 2uvr:A (2.9) BS06 CA 2.7.7.7 GO:0000287 ... Q97W02 17468100
    106583 2uvu:A (2.7) BS01 dna 2.7.7.7 GO:0000287 ... Q97W02 17468100
    106584 2uvu:A (2.7) BS02 dna 2.7.7.7 GO:0000287 ... Q97W02 17468100
    106585 2uvu:A (2.7) BS03 DGT 2.7.7.7 GO:0000287 ... Q97W02 17468100
    106586 2uvu:A (2.7) BS04 CA 2.7.7.7 GO:0000287 ... Q97W02 17468100
    106587 2uvu:A (2.7) BS05 CA 2.7.7.7 GO:0000287 ... Q97W02 17468100
    106588 2uvu:A (2.7) BS06 CA 2.7.7.7 GO:0000287 ... Q97W02 17468100
    106589 2uvv:A (2.2) BS01 dna 2.7.7.7 GO:0000287 ... Q97W02 17468100
    106590 2uvv:A (2.2) BS02 dna 2.7.7.7 GO:0000287 ... Q97W02 17468100
    106591 2uvv:A (2.2) BS03 DGT 2.7.7.7 GO:0000287 ... Q97W02 17468100
    106592 2uvv:A (2.2) BS04 CA 2.7.7.7 GO:0000287 ... Q97W02 17468100
    106593 2uvv:A (2.2) BS05 CA 2.7.7.7 GO:0000287 ... Q97W02 17468100
    106594 2uvv:A (2.2) BS06 CA 2.7.7.7 GO:0000287 ... Q97W02 17468100
    106595 2uvw:A (2.09) BS01 dna 2.7.7.7 GO:0000287 ... Q97W02 17468100
    106596 2uvw:A (2.09) BS02 dna 2.7.7.7 GO:0000287 ... Q97W02 17468100
    106597 2uvw:A (2.09) BS03 DGT 2.7.7.7 GO:0000287 ... Q97W02 17468100
    106598 2uvw:A (2.09) BS04 CA 2.7.7.7 GO:0000287 ... Q97W02 17468100
    106599 2uvw:A (2.09) BS05 CA 2.7.7.7 GO:0000287 ... Q97W02 17468100
    106600 2uvw:A (2.09) BS06 CA 2.7.7.7 GO:0000287 ... Q97W02 17468100

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).