SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1066401 9xcg:a (4.85) BS01 rna N/A N/A Q6D0W6 41475348
    1066402 9xcg:b (4.85) BS01 rna N/A N/A Q6D0W6 41475348
    1066403 9xcg:f (4.85) BS01 rna N/A N/A Q6D0W6 41475348
    1066404 9xd0:A (3.53) BS01 peptide N/A N/A P36107 41708645
    1066405 9xd0:A (3.53) BS02 46E N/A N/A P36107 41708645
    1066406 9xd0:B (3.53) BS01 46E N/A N/A Q06346 41708645
    1066407 9xdg:A (2.294) BS01 MG N/A GO:0005739 ... Q9SJH7 41580056
    1066408 9xdg:A (2.294) BS02 MNB N/A GO:0005739 ... Q9SJH7 41580056
    1066409 9xdg:A (2.294) BS03 OAA N/A GO:0005739 ... Q9SJH7 41580056
    1066410 9xdg:B (2.294) BS01 MNB N/A GO:0005739 ... Q9SJH7 41580056
    1066411 9xdg:B (2.294) BS02 MG N/A GO:0005739 ... Q9SJH7 41580056
    1066412 9xdg:B (2.294) BS03 MNB N/A GO:0005739 ... Q9SJH7 41580056
    1066413 9xed:A (3.4) BS01 PIO N/A GO:0001508 ... O43526 41442279
    1066414 9xed:A (3.4) BS02 A1LWZ N/A GO:0001508 ... O43526 41442279
    1066415 9xed:A (3.4) BS03 A1LWZ N/A GO:0001508 ... O43526 41442279
    1066416 9xed:B (3.4) BS01 A1LWZ N/A GO:0001508 ... O43526 41442279
    1066417 9xed:B (3.4) BS02 PIO N/A GO:0001508 ... O43526 41442279
    1066418 9xed:B (3.4) BS03 A1LWZ N/A GO:0001508 ... O43526 41442279
    1066419 9xed:C (3.4) BS01 A1LWZ N/A GO:0001508 ... O43526 41442279
    1066420 9xed:C (3.4) BS02 PIO N/A GO:0001508 ... O43526 41442279
    1066421 9xed:C (3.4) BS03 A1LWZ N/A GO:0001508 ... O43526 41442279
    1066422 9xed:D (3.4) BS01 A1LWZ N/A GO:0001508 ... O43526 41442279
    1066423 9xed:D (3.4) BS02 PIO N/A GO:0001508 ... O43526 41442279
    1066424 9xed:D (3.4) BS03 A1LWZ N/A GO:0001508 ... O43526 41442279
    1066425 9xey:A (1.65) BS01 MG N/A GO:0000287 ... P24300 N/A
    1066426 9xey:A (1.65) BS02 MG N/A GO:0000287 ... P24300 N/A
    1066427 9xf5:A (1.6) BS01 GLC N/A N/A N/A 41791706
    1066428 9xf5:A (1.6) BS02 GLC N/A N/A N/A 41791706
    1066429 9xf5:A (1.6) BS03 GLC N/A N/A N/A 41791706
    1066430 9xf5:A (1.6) BS04 GLC N/A N/A N/A 41791706
    1066431 9xf5:A (1.6) BS05 GLC N/A N/A N/A 41791706
    1066432 9xf5:A (1.6) BS06 GLC N/A N/A N/A 41791706
    1066433 9xfu:A (1.9) BS01 GLC N/A N/A N/A 41791706
    1066434 9xfu:A (1.9) BS02 GLC N/A N/A N/A 41791706
    1066435 9xfu:A (1.9) BS03 GLC N/A N/A N/A 41791706
    1066436 9xfw:A (2.0) BS01 DWZ N/A GO:0008800 ... Q01166 N/A
    1066437 9xfx:A (1.5) BS01 A1MCI N/A GO:0008800 ... Q01166 N/A
    1066438 9xfy:A (1.7) BS01 2RG N/A GO:0008800 ... Q01166 N/A
    1066439 9xgk:A (2.53) BS01 peptide N/A GO:0000287 ... G3MZY8 N/A
    1066440 9xgk:A (2.53) BS02 dna N/A GO:0000287 ... G3MZY8 N/A
    1066441 9xgk:A (2.53) BS03 rna N/A GO:0000287 ... G3MZY8 N/A
    1066442 9xgk:A (2.53) BS04 dna N/A GO:0000287 ... G3MZY8 N/A
    1066443 9xgk:A (2.53) BS05 ZN N/A GO:0000287 ... G3MZY8 N/A
    1066444 9xgk:A (2.53) BS06 MG N/A GO:0000287 ... G3MZY8 N/A
    1066445 9xgk:B (2.53) BS01 dna N/A GO:0000781 ... A5PJW8 N/A
    1066446 9xgk:B (2.53) BS02 rna N/A GO:0000781 ... A5PJW8 N/A
    1066447 9xgk:B (2.53) BS03 dna N/A GO:0000781 ... A5PJW8 N/A
    1066448 9xgk:B (2.53) BS04 ZN N/A GO:0000781 ... A5PJW8 N/A
    1066449 9xgk:C (2.53) BS01 ZN N/A GO:0003899 ... Q3T0Q3 N/A
    1066450 9xgk:I (2.53) BS01 ZN N/A GO:0001193 ... Q32P73 N/A
    1066451 9xgk:I (2.53) BS02 ZN N/A GO:0001193 ... Q32P73 N/A
    1066452 9xgk:J (2.53) BS01 ZN N/A GO:0003899 ... Q32P78 N/A
    1066453 9xgk:L (2.53) BS01 ZN N/A GO:0001650 ... Q3ZBC0 N/A
    1066454 9xia:A (1.9) BS01 DFR 5.3.1.5 GO:0000287 ... P24300 2734296
    1066455 9xia:A (1.9) BS02 MN 5.3.1.5 GO:0000287 ... P24300 2734296
    1066456 9xia:A (1.9) BS03 MN 5.3.1.5 GO:0000287 ... P24300 2734296
    1066457 9xim:A (2.4) BS01 XLS 5.3.1.5 GO:0000287 ... P12851 1610791
    1066458 9xim:A (2.4) BS02 MN 5.3.1.5 GO:0000287 ... P12851 1610791
    1066459 9xim:A (2.4) BS03 MN 5.3.1.5 GO:0000287 ... P12851 1610791
    1066460 9xim:B (2.4) BS01 XLS 5.3.1.5 GO:0000287 ... P12851 1610791
    1066461 9xim:B (2.4) BS02 MN 5.3.1.5 GO:0000287 ... P12851 1610791
    1066462 9xim:B (2.4) BS03 MN 5.3.1.5 GO:0000287 ... P12851 1610791
    1066463 9xim:C (2.4) BS01 XLS 5.3.1.5 GO:0000287 ... P12851 1610791
    1066464 9xim:C (2.4) BS02 MN 5.3.1.5 GO:0000287 ... P12851 1610791
    1066465 9xim:C (2.4) BS03 MN 5.3.1.5 GO:0000287 ... P12851 1610791
    1066466 9xim:D (2.4) BS01 XLS 5.3.1.5 GO:0000287 ... P12851 1610791
    1066467 9xim:D (2.4) BS02 MN 5.3.1.5 GO:0000287 ... P12851 1610791
    1066468 9xim:D (2.4) BS03 MN 5.3.1.5 GO:0000287 ... P12851 1610791
    1066469 9xkt:A (1.44) BS01 G4S N/A N/A N/A N/A
    1066470 9xkt:A (1.44) BS02 DGS N/A N/A N/A N/A
    1066471 9xkt:A (1.44) BS03 G4S N/A N/A N/A N/A
    1066472 9xl7:A (1.7) BS01 G4S N/A N/A N/A N/A
    1066473 9xl7:A (1.7) BS02 9RN N/A N/A N/A N/A
    1066474 9xl7:A (1.7) BS03 G4S N/A N/A N/A N/A
    1066475 9xmy:A (2.6) BS01 AAE N/A GO:0005737 ... Q386P1 41556494
    1066476 9xmy:A (2.6) BS02 CA N/A GO:0005737 ... Q386P1 41556494
    1066477 9xmy:B (2.6) BS01 SCA N/A GO:0005737 ... Q386P1 41556494
    1066478 9xmy:B (2.6) BS02 CA N/A GO:0005737 ... Q386P1 41556494
    1066479 9xmy:C (2.6) BS01 AAE N/A GO:0005737 ... Q386P1 41556494
    1066480 9xmy:C (2.6) BS02 CA N/A GO:0005737 ... Q386P1 41556494
    1066481 9xmy:D (2.6) BS01 SCA N/A GO:0005737 ... Q386P1 41556494
    1066482 9xmy:D (2.6) BS02 CA N/A GO:0005737 ... Q386P1 41556494
    1066483 9xoh:A (1.51) BS01 MQP N/A GO:0005515 ... Q54450 N/A
    1066484 9xoh:B (1.51) BS01 MQP N/A GO:0005515 ... Q54450 N/A
    1066485 9xoh:C (1.51) BS01 MQP N/A GO:0005515 ... Q54450 N/A
    1066486 9xoh:D (1.51) BS01 MQP N/A GO:0005515 ... Q54450 N/A
    1066487 9xok:A (1.8) BS01 MQP N/A GO:0005515 ... Q54450 N/A
    1066488 9xpd:A (1.22) BS01 HEM N/A GO:0005515 ... Q54450 N/A
    1066489 9xpi:A (2.161) BS01 HEM N/A GO:0005515 ... Q54450 N/A
    1066490 9xqr:A (3.14) BS01 ATP N/A GO:0000166 ... P51576 N/A
    1066491 9xqr:A (3.14) BS02 CA N/A GO:0000166 ... P51576 N/A
    1066492 9xqr:A (3.14) BS03 ATP N/A GO:0000166 ... P51576 N/A
    1066493 9xqr:A (3.14) BS04 A1D8Z N/A GO:0000166 ... P51576 N/A
    1066494 9xqr:B (3.14) BS01 ATP N/A GO:0000166 ... P51576 N/A
    1066495 9xqr:B (3.14) BS02 ATP N/A GO:0000166 ... P51576 N/A
    1066496 9xqr:B (3.14) BS03 CA N/A GO:0000166 ... P51576 N/A
    1066497 9xqr:C (3.14) BS01 ATP N/A GO:0000166 ... P51576 N/A
    1066498 9xqr:C (3.14) BS02 ATP N/A GO:0000166 ... P51576 N/A
    1066499 9xqr:C (3.14) BS03 A1D8Z N/A GO:0000166 ... P51576 N/A
    1066500 9xrl:1 (3.74) BS01 ZN N/A N/A N/A N/A
    1066501 9xrl:3 (3.74) BS01 ZN N/A N/A N/A N/A
    1066502 9xrl:9 (3.74) BS01 ZN N/A N/A N/A N/A
    1066503 9xrl:AF (3.74) BS01 GTP N/A N/A N/A N/A
    1066504 9xrl:AK (3.74) BS01 ADP N/A N/A N/A N/A
    1066505 9xrl:AL (3.74) BS01 ZN N/A N/A N/A N/A
    1066506 9xrl:AL (3.74) BS02 ZN N/A N/A N/A N/A
    1066507 9xrl:AN (3.74) BS01 GTP N/A N/A N/A N/A
    1066508 9xrl:AO (3.74) BS01 GTP N/A N/A N/A N/A
    1066509 9xrl:AQ (3.74) BS01 ADP N/A N/A N/A N/A
    1066510 9xrl:AR (3.74) BS01 ZN N/A N/A N/A N/A
    1066511 9xrl:AR (3.74) BS02 ZN N/A N/A N/A N/A
    1066512 9xrl:AR (3.74) BS03 ZN N/A N/A N/A N/A
    1066513 9xrl:AR (3.74) BS04 ZN N/A N/A N/A N/A
    1066514 9xrl:t (3.74) BS01 GTP N/A N/A N/A N/A
    1066515 9xrl:u (3.74) BS01 GTP N/A N/A N/A N/A
    1066516 9xrl:w (3.74) BS01 ADP N/A N/A N/A N/A
    1066517 9xrl:x (3.74) BS01 ZN N/A N/A N/A N/A
    1066518 9xrl:x (3.74) BS02 ZN N/A N/A N/A N/A
    1066519 9xrl:x (3.74) BS03 ZN N/A N/A N/A N/A
    1066520 9xrl:x (3.74) BS04 ZN N/A N/A N/A N/A
    1066521 9xro:C (2.88) BS01 A1ER4 N/A N/A P0ADC3 41663437
    1066522 9xro:E (2.88) BS01 A1ER4 N/A N/A P75958 41663437
    1066523 9xu9:A (2.84) BS01 A1E1C N/A N/A P00533 N/A
    1066524 9xub:A (2.6) BS01 FAD N/A GO:0004791 ... P9WHH0 41683636
    1066525 9xub:B (2.6) BS01 FAD N/A GO:0004791 ... P9WHH0 41683636
    1066526 9xub:C (2.6) BS01 FAD N/A GO:0004791 ... P9WHH0 41683636
    1066527 9xub:D (2.6) BS01 FAD N/A GO:0004791 ... P9WHH0 41683636
    1066528 9xv1:A (1.96) BS01 A1E1G N/A GO:0000122 ... P09467 N/A
    1066529 9xv1:A (1.96) BS02 A1E1G N/A GO:0000122 ... P09467 N/A
    1066530 9xv1:B (1.96) BS01 A1E1G N/A GO:0000122 ... P09467 N/A
    1066531 9xv1:C (1.96) BS01 A1E1G N/A GO:0000122 ... P09467 N/A
    1066532 9xv1:D (1.96) BS01 A1E1G N/A GO:0000122 ... P09467 N/A
    1066533 9xv1:D (1.96) BS02 A1E1G N/A GO:0000122 ... P09467 N/A
    1066534 9xvc:A (3.2) BS01 Y43 N/A N/A N/A N/A
    1066535 9xvc:B (3.2) BS01 Y43 N/A N/A N/A N/A
    1066536 9xvc:C (3.2) BS01 Y43 N/A N/A N/A N/A
    1066537 9xvc:D (3.2) BS01 Y43 N/A N/A N/A N/A
    1066538 9xvc:E (3.2) BS01 AMP N/A N/A N/A N/A
    1066539 9xvc:F (3.2) BS01 AMP N/A N/A N/A N/A
    1066540 9xvc:G (3.2) BS01 AMP N/A N/A N/A N/A
    1066541 9xvc:H (3.2) BS01 AMP N/A N/A N/A N/A
    1066542 9xvc:I (3.2) BS01 Y43 N/A N/A N/A N/A
    1066543 9xvc:J (3.2) BS01 Y43 N/A N/A N/A N/A
    1066544 9xvc:K (3.2) BS01 Y43 N/A N/A N/A N/A
    1066545 9xvc:L (3.2) BS01 Y43 N/A N/A N/A N/A
    1066546 9xvc:M (3.2) BS01 AMP N/A N/A N/A N/A
    1066547 9xvc:N (3.2) BS01 AMP N/A N/A N/A N/A
    1066548 9xvc:O (3.2) BS01 AMP N/A N/A N/A N/A
    1066549 9xvc:P (3.2) BS01 AMP N/A N/A N/A N/A
    1066550 9xvd:A (2.6) BS01 dna N/A N/A P08651 41408833
    1066551 9xvd:A (2.6) BS02 dna N/A N/A P08651 41408833
    1066552 9xvd:A (2.6) BS03 ZN N/A N/A P08651 41408833
    1066553 9xvd:B (2.6) BS01 dna N/A N/A P08651 41408833
    1066554 9xvd:B (2.6) BS02 dna N/A N/A P08651 41408833
    1066555 9xvd:B (2.6) BS03 dna N/A N/A P08651 41408833
    1066556 9xvd:B (2.6) BS04 ZN N/A N/A P08651 41408833
    1066557 9xvd:C (2.6) BS01 dna N/A N/A P08651 41408833
    1066558 9xvd:C (2.6) BS02 dna N/A N/A P08651 41408833
    1066559 9xvd:C (2.6) BS03 ZN N/A N/A P08651 41408833
    1066560 9xvd:D (2.6) BS01 dna N/A N/A P08651 41408833
    1066561 9xvd:D (2.6) BS02 dna N/A N/A P08651 41408833
    1066562 9xvd:D (2.6) BS03 ZN N/A N/A P08651 41408833
    1066563 9xvf:A (2.6) BS01 dna N/A N/A Q12857 41408833
    1066564 9xvf:A (2.6) BS02 dna N/A N/A Q12857 41408833
    1066565 9xvf:A (2.6) BS03 ZN N/A N/A Q12857 41408833
    1066566 9xvf:B (2.6) BS01 dna N/A N/A Q12857 41408833
    1066567 9xvf:B (2.6) BS02 dna N/A N/A Q12857 41408833
    1066568 9xvf:B (2.6) BS03 ZN N/A N/A Q12857 41408833
    1066569 9xvh:A (1.94) BS01 ZN N/A N/A P54355 N/A
    1066570 9xvh:B (1.94) BS01 ZN N/A N/A P54355 N/A
    1066571 9xvh:C (1.94) BS01 ZN N/A N/A P54355 N/A
    1066572 9xvh:D (1.94) BS01 ZN N/A N/A P54355 N/A
    1066573 9xvo:A (2.5) BS01 dna N/A N/A P08651 41408833
    1066574 9xvo:A (2.5) BS02 dna N/A N/A P08651 41408833
    1066575 9xvo:A (2.5) BS03 ZN N/A N/A P08651 41408833
    1066576 9xvo:B (2.5) BS01 dna N/A N/A P08651 41408833
    1066577 9xvo:B (2.5) BS02 dna N/A N/A P08651 41408833
    1066578 9xvo:B (2.5) BS03 ZN N/A N/A P08651 41408833
    1066579 9xvq:A (1.76) BS01 dna N/A N/A Q12857 41408833
    1066580 9xvq:A (1.76) BS02 ZN N/A N/A Q12857 41408833
    1066581 9xvs:B (2.08) BS01 A1E1K N/A GO:0004082 ... P18669 N/A
    1066582 9xvs:C (2.08) BS01 A1E1K N/A GO:0004082 ... P18669 N/A
    1066583 9xvw:A (2.5) BS01 ZN N/A N/A Q6UCA5 N/A
    1066584 9xvw:B (2.5) BS01 ZN N/A N/A Q6UCA5 N/A
    1066585 9xw4:B (2.11) BS01 A1E1J N/A GO:0004082 ... P18669 N/A
    1066586 9xw4:C (2.11) BS01 A1E1J N/A GO:0004082 ... P18669 N/A
    1066587 9xw4:C (2.11) BS02 A1E1J N/A GO:0004082 ... P18669 N/A
    1066588 9xwt:B (2.28) BS01 A1E1M N/A GO:0004082 ... P18669 N/A
    1066589 9xwt:C (2.28) BS01 A1E1M N/A GO:0004082 ... P18669 N/A
    1066590 9xwt:C (2.28) BS02 A1E1M N/A GO:0004082 ... P18669 N/A
    1066591 9xy1:A (1.923) BS01 dna N/A GO:0004519 ... N/A N/A
    1066592 9xy1:A (1.923) BS02 dna N/A GO:0004519 ... N/A N/A
    1066593 9xy1:A (1.923) BS03 CA N/A GO:0004519 ... N/A N/A
    1066594 9xy1:A (1.923) BS04 CA N/A GO:0004519 ... N/A N/A
    1066595 9xy1:A (1.923) BS05 CA N/A GO:0004519 ... N/A N/A
    1066596 9xy1:A (1.923) BS06 CA N/A GO:0004519 ... N/A N/A
    1066597 9xy1:A (1.923) BS07 CA N/A GO:0004519 ... N/A N/A
    1066598 9xy1:A (1.923) BS08 CA N/A GO:0004519 ... N/A N/A
    1066599 9xy2:A (2.402) BS01 dna N/A GO:0004519 ... N/A N/A
    1066600 9xy2:A (2.402) BS02 dna N/A GO:0004519 ... N/A N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).