SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1067201 9y49:CD (3.4) BS03 rna N/A N/A N/A 41603730
    1067202 9y49:CE (3.4) BS01 rna N/A N/A N/A 41603730
    1067203 9y49:CE (3.4) BS02 rna N/A N/A N/A 41603730
    1067204 9y49:CF (3.4) BS01 rna N/A N/A N/A 41603730
    1067205 9y49:CF (3.4) BS02 rna N/A N/A N/A 41603730
    1067206 9y49:CF (3.4) BS03 rna N/A N/A N/A 41603730
    1067207 9y49:CG (3.4) BS01 rna N/A N/A N/A 41603730
    1067208 9y49:CG (3.4) BS02 rna N/A N/A N/A 41603730
    1067209 9y49:CG (3.4) BS03 rna N/A N/A N/A 41603730
    1067210 9y49:CH (3.4) BS01 rna N/A N/A N/A 41603730
    1067211 9y49:CH (3.4) BS02 rna N/A N/A N/A 41603730
    1067212 9y49:CI (3.4) BS01 rna N/A N/A N/A 41603730
    1067213 9y49:CI (3.4) BS02 rna N/A N/A N/A 41603730
    1067214 9y49:CI (3.4) BS03 rna N/A N/A N/A 41603730
    1067215 9y49:CJ (3.4) BS01 rna N/A N/A N/A 41603730
    1067216 9y49:CJ (3.4) BS02 rna N/A N/A N/A 41603730
    1067217 9y49:CL (3.4) BS01 rna N/A N/A N/A 41603730
    1067218 9y49:CL (3.4) BS02 rna N/A N/A N/A 41603730
    1067219 9y49:CL (3.4) BS03 rna N/A N/A N/A 41603730
    1067220 9y49:CM (3.4) BS01 rna N/A N/A N/A 41603730
    1067221 9y49:CM (3.4) BS02 rna N/A N/A N/A 41603730
    1067222 9y49:CN (3.4) BS01 rna N/A N/A N/A 41603730
    1067223 9y49:CN (3.4) BS02 rna N/A N/A N/A 41603730
    1067224 9y49:CN (3.4) BS03 rna N/A N/A N/A 41603730
    1067225 9y49:CO (3.4) BS01 rna N/A N/A N/A 41603730
    1067226 9y49:CO (3.4) BS02 rna N/A N/A N/A 41603730
    1067227 9y49:CP (3.4) BS01 rna N/A N/A N/A 41603730
    1067228 9y49:CP (3.4) BS02 rna N/A N/A N/A 41603730
    1067229 9y49:CP (3.4) BS03 rna N/A N/A N/A 41603730
    1067230 9y49:CQ (3.4) BS01 rna N/A N/A N/A 41603730
    1067231 9y49:CQ (3.4) BS02 rna N/A N/A N/A 41603730
    1067232 9y49:CR (3.4) BS01 rna N/A GO:0002181 ... Q3T0W9 41603730
    1067233 9y49:CR (3.4) BS02 rna N/A GO:0002181 ... Q3T0W9 41603730
    1067234 9y49:CR (3.4) BS03 rna N/A GO:0002181 ... Q3T0W9 41603730
    1067235 9y49:CS (3.4) BS01 rna N/A N/A N/A 41603730
    1067236 9y49:CS (3.4) BS02 rna N/A N/A N/A 41603730
    1067237 9y49:CS (3.4) BS03 rna N/A N/A N/A 41603730
    1067238 9y49:CT (3.4) BS01 rna N/A N/A N/A 41603730
    1067239 9y49:CT (3.4) BS02 rna N/A N/A N/A 41603730
    1067240 9y49:CT (3.4) BS03 rna N/A N/A N/A 41603730
    1067241 9y49:CU (3.4) BS01 rna N/A N/A N/A 41603730
    1067242 9y49:CV (3.4) BS01 rna N/A N/A N/A 41603730
    1067243 9y49:CV (3.4) BS02 rna N/A N/A N/A 41603730
    1067244 9y49:CW (3.4) BS01 rna N/A N/A N/A 41603730
    1067245 9y49:CW (3.4) BS02 rna N/A N/A N/A 41603730
    1067246 9y49:CX (3.4) BS01 rna N/A N/A N/A 41603730
    1067247 9y49:CX (3.4) BS02 rna N/A N/A N/A 41603730
    1067248 9y49:CX (3.4) BS03 rna N/A N/A N/A 41603730
    1067249 9y49:CY (3.4) BS01 rna N/A N/A N/A 41603730
    1067250 9y49:CY (3.4) BS02 rna N/A N/A N/A 41603730
    1067251 9y49:CZ (3.4) BS01 rna N/A N/A N/A 41603730
    1067252 9y49:Ca (3.4) BS01 rna N/A N/A N/A 41603730
    1067253 9y49:Ca (3.4) BS02 rna N/A N/A N/A 41603730
    1067254 9y49:Cb (3.4) BS01 rna N/A N/A N/A 41603730
    1067255 9y49:Cb (3.4) BS02 rna N/A N/A N/A 41603730
    1067256 9y49:Cc (3.4) BS01 rna N/A N/A N/A 41603730
    1067257 9y49:Cd (3.4) BS01 rna N/A N/A N/A 41603730
    1067258 9y49:Ce (3.4) BS01 rna N/A N/A N/A 41603730
    1067259 9y49:Ce (3.4) BS02 rna N/A N/A N/A 41603730
    1067260 9y49:Cf (3.4) BS01 rna N/A N/A N/A 41603730
    1067261 9y49:Cf (3.4) BS02 rna N/A N/A N/A 41603730
    1067262 9y49:Cg (3.4) BS01 rna N/A N/A N/A 41603730
    1067263 9y49:Ch (3.4) BS01 rna N/A N/A N/A 41603730
    1067264 9y49:Ch (3.4) BS02 rna N/A N/A N/A 41603730
    1067265 9y49:Ci (3.4) BS01 rna N/A N/A N/A 41603730
    1067266 9y49:Cj (3.4) BS01 rna N/A N/A N/A 41603730
    1067267 9y49:Cj (3.4) BS02 rna N/A N/A N/A 41603730
    1067268 9y49:Cj (3.4) BS03 rna N/A N/A N/A 41603730
    1067269 9y49:Ck (3.4) BS01 rna N/A N/A N/A 41603730
    1067270 9y49:Cl (3.4) BS01 rna N/A N/A N/A 41603730
    1067271 9y49:Cl (3.4) BS02 rna N/A N/A N/A 41603730
    1067272 9y49:Cl (3.4) BS03 rna N/A N/A N/A 41603730
    1067273 9y49:Cm (3.4) BS01 rna N/A N/A N/A 41603730
    1067274 9y49:Cm (3.4) BS02 rna N/A N/A N/A 41603730
    1067275 9y49:Co (3.4) BS01 rna N/A N/A N/A 41603730
    1067276 9y49:Co (3.4) BS02 rna N/A N/A N/A 41603730
    1067277 9y49:Co (3.4) BS03 rna N/A N/A N/A 41603730
    1067278 9y49:Cp (3.4) BS01 rna N/A N/A N/A 41603730
    1067279 9y49:Cp (3.4) BS02 rna N/A N/A N/A 41603730
    1067280 9y49:Cp (3.4) BS03 rna N/A N/A N/A 41603730
    1067281 9y49:Cr (3.4) BS01 rna N/A N/A N/A 41603730
    1067282 9y49:Cr (3.4) BS02 rna N/A N/A N/A 41603730
    1067283 9y49:Ct (3.4) BS01 rna N/A N/A N/A 41603730
    1067284 9y49:Ct (3.4) BS02 rna N/A N/A N/A 41603730
    1067285 9y49:Ct (3.4) BS03 rna N/A N/A N/A 41603730
    1067286 9y49:Cz (3.4) BS01 rna N/A N/A N/A 41603730
    1067287 9y49:Cz (3.4) BS02 rna N/A N/A N/A 41603730
    1067288 9y4c:A (3.23) BS01 dna N/A GO:0000262 ... P54098 41648309
    1067289 9y4c:A (3.23) BS02 CA N/A GO:0000262 ... P54098 41648309
    1067290 9y4c:A (3.23) BS03 DTP N/A GO:0000262 ... P54098 41648309
    1067291 9y4d:A (2.94) BS01 dna N/A GO:0000262 ... P54098 41648309
    1067292 9y4d:A (2.94) BS02 CA N/A GO:0000262 ... P54098 41648309
    1067293 9y4d:A (2.94) BS03 DTP N/A GO:0000262 ... P54098 41648309
    1067294 9y4e:A (3.05) BS01 dna N/A GO:0000262 ... P54098 41648309
    1067295 9y4e:A (3.05) BS02 CA N/A GO:0000262 ... P54098 41648309
    1067296 9y4e:A (3.05) BS03 DTP N/A GO:0000262 ... P54098 41648309
    1067297 9y4f:A (2.62) BS01 dna N/A GO:0000262 ... P54098 41648309
    1067298 9y4f:A (2.62) BS02 CA N/A GO:0000262 ... P54098 41648309
    1067299 9y4f:A (2.62) BS03 DTP N/A GO:0000262 ... P54098 41648309
    1067300 9y4g:AA (3.3) BS01 rna N/A N/A N/A 41603730
    1067301 9y4g:AB (3.3) BS01 rna N/A N/A N/A 41603730
    1067302 9y4g:AB (3.3) BS02 rna N/A N/A N/A 41603730
    1067303 9y4g:AC (3.3) BS01 rna N/A N/A N/A 41603730
    1067304 9y4g:AD (3.3) BS01 rna N/A N/A N/A 41603730
    1067305 9y4g:AE (3.3) BS01 rna N/A N/A N/A 41603730
    1067306 9y4g:AF (3.3) BS01 rna N/A N/A N/A 41603730
    1067307 9y4g:AF (3.3) BS02 rna N/A N/A N/A 41603730
    1067308 9y4g:AG (3.3) BS01 rna N/A N/A N/A 41603730
    1067309 9y4g:AH (3.3) BS01 rna N/A N/A N/A 41603730
    1067310 9y4g:AI (3.3) BS01 rna N/A N/A N/A 41603730
    1067311 9y4g:AI (3.3) BS02 rna N/A N/A N/A 41603730
    1067312 9y4g:AJ (3.3) BS01 rna N/A N/A N/A 41603730
    1067313 9y4g:AK (3.3) BS01 rna N/A N/A N/A 41603730
    1067314 9y4g:AL (3.3) BS01 rna N/A N/A N/A 41603730
    1067315 9y4g:AM (3.3) BS01 rna N/A N/A N/A 41603730
    1067316 9y4g:AN (3.3) BS01 rna N/A N/A N/A 41603730
    1067317 9y4g:AN (3.3) BS02 rna N/A N/A N/A 41603730
    1067318 9y4g:AO (3.3) BS01 rna N/A N/A N/A 41603730
    1067319 9y4g:AO (3.3) BS02 rna N/A N/A N/A 41603730
    1067320 9y4g:AP (3.3) BS01 rna N/A N/A N/A 41603730
    1067321 9y4g:AQ (3.3) BS01 rna N/A N/A N/A 41603730
    1067322 9y4g:AR (3.3) BS01 rna N/A N/A N/A 41603730
    1067323 9y4g:AS (3.3) BS01 rna N/A N/A N/A 41603730
    1067324 9y4g:AT (3.3) BS01 rna N/A N/A N/A 41603730
    1067325 9y4g:AU (3.3) BS01 rna N/A N/A N/A 41603730
    1067326 9y4g:AW (3.3) BS01 rna N/A N/A N/A 41603730
    1067327 9y4g:AX (3.3) BS01 rna N/A N/A N/A 41603730
    1067328 9y4g:AY (3.3) BS01 rna N/A N/A N/A 41603730
    1067329 9y4g:AZ (3.3) BS01 rna N/A N/A N/A 41603730
    1067330 9y4g:Aa (3.3) BS01 rna N/A N/A N/A 41603730
    1067331 9y4g:Ab (3.3) BS01 rna N/A N/A N/A 41603730
    1067332 9y4g:Ac (3.3) BS01 rna N/A N/A N/A 41603730
    1067333 9y4g:Ad (3.3) BS01 rna N/A N/A N/A 41603730
    1067334 9y4g:Ae (3.3) BS01 rna N/A N/A N/A 41603730
    1067335 9y4g:Af (3.3) BS01 rna N/A N/A N/A 41603730
    1067336 9y4g:Ag (3.3) BS01 rna N/A N/A N/A 41603730
    1067337 9y4g:CA (3.3) BS01 rna N/A N/A N/A 41603730
    1067338 9y4g:CA (3.3) BS02 rna N/A N/A N/A 41603730
    1067339 9y4g:CA (3.3) BS03 rna N/A N/A N/A 41603730
    1067340 9y4g:CB (3.3) BS01 rna N/A N/A N/A 41603730
    1067341 9y4g:CB (3.3) BS02 rna N/A N/A N/A 41603730
    1067342 9y4g:CC (3.3) BS01 rna N/A N/A N/A 41603730
    1067343 9y4g:CC (3.3) BS02 rna N/A N/A N/A 41603730
    1067344 9y4g:CC (3.3) BS03 rna N/A N/A N/A 41603730
    1067345 9y4g:CD (3.3) BS01 rna N/A N/A N/A 41603730
    1067346 9y4g:CD (3.3) BS02 rna N/A N/A N/A 41603730
    1067347 9y4g:CD (3.3) BS03 rna N/A N/A N/A 41603730
    1067348 9y4g:CE (3.3) BS01 rna N/A N/A N/A 41603730
    1067349 9y4g:CE (3.3) BS02 rna N/A N/A N/A 41603730
    1067350 9y4g:CF (3.3) BS01 rna N/A N/A N/A 41603730
    1067351 9y4g:CF (3.3) BS02 rna N/A N/A N/A 41603730
    1067352 9y4g:CF (3.3) BS03 rna N/A N/A N/A 41603730
    1067353 9y4g:CG (3.3) BS01 rna N/A N/A N/A 41603730
    1067354 9y4g:CG (3.3) BS02 rna N/A N/A N/A 41603730
    1067355 9y4g:CG (3.3) BS03 rna N/A N/A N/A 41603730
    1067356 9y4g:CH (3.3) BS01 rna N/A N/A N/A 41603730
    1067357 9y4g:CH (3.3) BS02 rna N/A N/A N/A 41603730
    1067358 9y4g:CI (3.3) BS01 rna N/A N/A N/A 41603730
    1067359 9y4g:CI (3.3) BS02 rna N/A N/A N/A 41603730
    1067360 9y4g:CI (3.3) BS03 rna N/A N/A N/A 41603730
    1067361 9y4g:CJ (3.3) BS01 rna N/A N/A N/A 41603730
    1067362 9y4g:CJ (3.3) BS02 rna N/A N/A N/A 41603730
    1067363 9y4g:CL (3.3) BS01 rna N/A N/A N/A 41603730
    1067364 9y4g:CL (3.3) BS02 rna N/A N/A N/A 41603730
    1067365 9y4g:CM (3.3) BS01 rna N/A N/A N/A 41603730
    1067366 9y4g:CM (3.3) BS02 rna N/A N/A N/A 41603730
    1067367 9y4g:CN (3.3) BS01 rna N/A N/A N/A 41603730
    1067368 9y4g:CN (3.3) BS02 rna N/A N/A N/A 41603730
    1067369 9y4g:CN (3.3) BS03 rna N/A N/A N/A 41603730
    1067370 9y4g:CO (3.3) BS01 rna N/A N/A N/A 41603730
    1067371 9y4g:CO (3.3) BS02 rna N/A N/A N/A 41603730
    1067372 9y4g:CP (3.3) BS01 rna N/A N/A N/A 41603730
    1067373 9y4g:CP (3.3) BS02 rna N/A N/A N/A 41603730
    1067374 9y4g:CP (3.3) BS03 rna N/A N/A N/A 41603730
    1067375 9y4g:CQ (3.3) BS01 rna N/A N/A N/A 41603730
    1067376 9y4g:CQ (3.3) BS02 rna N/A N/A N/A 41603730
    1067377 9y4g:CR (3.3) BS01 rna N/A N/A N/A 41603730
    1067378 9y4g:CR (3.3) BS02 rna N/A N/A N/A 41603730
    1067379 9y4g:CR (3.3) BS03 rna N/A N/A N/A 41603730
    1067380 9y4g:CS (3.3) BS01 rna N/A N/A N/A 41603730
    1067381 9y4g:CS (3.3) BS02 rna N/A N/A N/A 41603730
    1067382 9y4g:CS (3.3) BS03 rna N/A N/A N/A 41603730
    1067383 9y4g:CT (3.3) BS01 rna N/A N/A N/A 41603730
    1067384 9y4g:CT (3.3) BS02 rna N/A N/A N/A 41603730
    1067385 9y4g:CT (3.3) BS03 rna N/A N/A N/A 41603730
    1067386 9y4g:CU (3.3) BS01 rna N/A N/A N/A 41603730
    1067387 9y4g:CV (3.3) BS01 rna N/A N/A N/A 41603730
    1067388 9y4g:CV (3.3) BS02 rna N/A N/A N/A 41603730
    1067389 9y4g:CW (3.3) BS01 rna N/A N/A N/A 41603730
    1067390 9y4g:CW (3.3) BS02 rna N/A N/A N/A 41603730
    1067391 9y4g:CX (3.3) BS01 rna N/A N/A N/A 41603730
    1067392 9y4g:CX (3.3) BS02 rna N/A N/A N/A 41603730
    1067393 9y4g:CX (3.3) BS03 rna N/A N/A N/A 41603730
    1067394 9y4g:CY (3.3) BS01 rna N/A N/A N/A 41603730
    1067395 9y4g:CY (3.3) BS02 rna N/A N/A N/A 41603730
    1067396 9y4g:CZ (3.3) BS01 rna N/A N/A N/A 41603730
    1067397 9y4g:Ca (3.3) BS01 rna N/A N/A N/A 41603730
    1067398 9y4g:Ca (3.3) BS02 rna N/A N/A N/A 41603730
    1067399 9y4g:Cb (3.3) BS01 rna N/A N/A N/A 41603730
    1067400 9y4g:Cb (3.3) BS02 rna N/A N/A N/A 41603730

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).