SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1067401 9y4g:Cd (3.3) BS01 rna N/A N/A N/A 41603730
    1067402 9y4g:Ce (3.3) BS01 rna N/A N/A N/A 41603730
    1067403 9y4g:Ce (3.3) BS02 rna N/A N/A N/A 41603730
    1067404 9y4g:Cf (3.3) BS01 rna N/A N/A N/A 41603730
    1067405 9y4g:Cf (3.3) BS02 rna N/A N/A N/A 41603730
    1067406 9y4g:Cg (3.3) BS01 rna N/A N/A N/A 41603730
    1067407 9y4g:Ch (3.3) BS01 rna N/A N/A N/A 41603730
    1067408 9y4g:Ch (3.3) BS02 rna N/A N/A N/A 41603730
    1067409 9y4g:Ci (3.3) BS01 rna N/A N/A N/A 41603730
    1067410 9y4g:Cj (3.3) BS01 rna N/A N/A N/A 41603730
    1067411 9y4g:Cj (3.3) BS02 rna N/A N/A N/A 41603730
    1067412 9y4g:Cj (3.3) BS03 rna N/A N/A N/A 41603730
    1067413 9y4g:Ck (3.3) BS01 rna N/A N/A N/A 41603730
    1067414 9y4g:Cl (3.3) BS01 rna N/A N/A N/A 41603730
    1067415 9y4g:Cl (3.3) BS02 rna N/A N/A N/A 41603730
    1067416 9y4g:Cl (3.3) BS03 rna N/A N/A N/A 41603730
    1067417 9y4g:Cm (3.3) BS01 rna N/A N/A N/A 41603730
    1067418 9y4g:Cm (3.3) BS02 rna N/A N/A N/A 41603730
    1067419 9y4g:Co (3.3) BS01 rna N/A N/A N/A 41603730
    1067420 9y4g:Co (3.3) BS02 rna N/A N/A N/A 41603730
    1067421 9y4g:Co (3.3) BS03 rna N/A N/A N/A 41603730
    1067422 9y4g:Cp (3.3) BS01 rna N/A N/A N/A 41603730
    1067423 9y4g:Cp (3.3) BS02 rna N/A N/A N/A 41603730
    1067424 9y4g:Cp (3.3) BS03 rna N/A N/A N/A 41603730
    1067425 9y4g:Cr (3.3) BS01 rna N/A N/A N/A 41603730
    1067426 9y4g:Cr (3.3) BS02 rna N/A N/A N/A 41603730
    1067427 9y4g:Cz (3.3) BS01 rna N/A N/A N/A 41603730
    1067428 9y4h:AA (4.7) BS01 rna N/A N/A N/A 41603730
    1067429 9y4h:AB (4.7) BS01 rna N/A N/A N/A 41603730
    1067430 9y4h:AB (4.7) BS02 rna N/A N/A N/A 41603730
    1067431 9y4h:AC (4.7) BS01 rna N/A N/A N/A 41603730
    1067432 9y4h:AD (4.7) BS01 rna N/A N/A N/A 41603730
    1067433 9y4h:AE (4.7) BS01 rna N/A N/A N/A 41603730
    1067434 9y4h:AF (4.7) BS01 rna N/A N/A N/A 41603730
    1067435 9y4h:AG (4.7) BS01 rna N/A N/A N/A 41603730
    1067436 9y4h:AH (4.7) BS01 rna N/A N/A N/A 41603730
    1067437 9y4h:AI (4.7) BS01 rna N/A N/A N/A 41603730
    1067438 9y4h:AI (4.7) BS02 rna N/A N/A N/A 41603730
    1067439 9y4h:AJ (4.7) BS01 rna N/A N/A N/A 41603730
    1067440 9y4h:AK (4.7) BS01 rna N/A N/A N/A 41603730
    1067441 9y4h:AL (4.7) BS01 rna N/A N/A N/A 41603730
    1067442 9y4h:AN (4.7) BS01 rna N/A N/A N/A 41603730
    1067443 9y4h:AN (4.7) BS02 rna N/A N/A N/A 41603730
    1067444 9y4h:AO (4.7) BS01 rna N/A N/A N/A 41603730
    1067445 9y4h:AP (4.7) BS01 rna N/A N/A N/A 41603730
    1067446 9y4h:AQ (4.7) BS01 rna N/A N/A N/A 41603730
    1067447 9y4h:AR (4.7) BS01 rna N/A N/A N/A 41603730
    1067448 9y4h:AS (4.7) BS01 rna N/A N/A N/A 41603730
    1067449 9y4h:AT (4.7) BS01 rna N/A N/A N/A 41603730
    1067450 9y4h:AU (4.7) BS01 rna N/A N/A N/A 41603730
    1067451 9y4h:AW (4.7) BS01 rna N/A N/A N/A 41603730
    1067452 9y4h:AX (4.7) BS01 rna N/A N/A N/A 41603730
    1067453 9y4h:AY (4.7) BS01 rna N/A N/A N/A 41603730
    1067454 9y4h:AZ (4.7) BS01 rna N/A N/A N/A 41603730
    1067455 9y4h:Aa (4.7) BS01 rna N/A N/A N/A 41603730
    1067456 9y4h:Ab (4.7) BS01 rna N/A N/A N/A 41603730
    1067457 9y4h:Ac (4.7) BS01 rna N/A N/A N/A 41603730
    1067458 9y4h:Ad (4.7) BS01 rna N/A N/A N/A 41603730
    1067459 9y4h:Ae (4.7) BS01 rna N/A N/A N/A 41603730
    1067460 9y4h:Ag (4.7) BS01 rna N/A N/A N/A 41603730
    1067461 9y4h:CA (4.7) BS01 rna N/A N/A N/A 41603730
    1067462 9y4h:CA (4.7) BS02 rna N/A N/A N/A 41603730
    1067463 9y4h:CB (4.7) BS01 rna N/A N/A N/A 41603730
    1067464 9y4h:CC (4.7) BS01 rna N/A N/A N/A 41603730
    1067465 9y4h:CC (4.7) BS02 rna N/A N/A N/A 41603730
    1067466 9y4h:CD (4.7) BS01 rna N/A N/A N/A 41603730
    1067467 9y4h:CD (4.7) BS02 rna N/A N/A N/A 41603730
    1067468 9y4h:CE (4.7) BS01 rna N/A N/A N/A 41603730
    1067469 9y4h:CF (4.7) BS01 rna N/A N/A N/A 41603730
    1067470 9y4h:CF (4.7) BS02 rna N/A N/A N/A 41603730
    1067471 9y4h:CG (4.7) BS01 rna N/A N/A N/A 41603730
    1067472 9y4h:CG (4.7) BS02 rna N/A N/A N/A 41603730
    1067473 9y4h:CH (4.7) BS01 rna N/A N/A N/A 41603730
    1067474 9y4h:CI (4.7) BS01 rna N/A N/A N/A 41603730
    1067475 9y4h:CI (4.7) BS02 rna N/A N/A N/A 41603730
    1067476 9y4h:CJ (4.7) BS01 rna N/A N/A N/A 41603730
    1067477 9y4h:CJ (4.7) BS02 rna N/A N/A N/A 41603730
    1067478 9y4h:CL (4.7) BS01 rna N/A N/A N/A 41603730
    1067479 9y4h:CL (4.7) BS02 rna N/A N/A N/A 41603730
    1067480 9y4h:CM (4.7) BS01 rna N/A N/A N/A 41603730
    1067481 9y4h:CN (4.7) BS01 rna N/A N/A N/A 41603730
    1067482 9y4h:CN (4.7) BS02 rna N/A N/A N/A 41603730
    1067483 9y4h:CO (4.7) BS01 rna N/A N/A N/A 41603730
    1067484 9y4h:CP (4.7) BS01 rna N/A N/A N/A 41603730
    1067485 9y4h:CP (4.7) BS02 rna N/A N/A N/A 41603730
    1067486 9y4h:CQ (4.7) BS01 rna N/A N/A N/A 41603730
    1067487 9y4h:CS (4.7) BS01 rna N/A N/A N/A 41603730
    1067488 9y4h:CS (4.7) BS02 rna N/A N/A N/A 41603730
    1067489 9y4h:CT (4.7) BS01 rna N/A N/A N/A 41603730
    1067490 9y4h:CT (4.7) BS02 rna N/A N/A N/A 41603730
    1067491 9y4h:CU (4.7) BS01 rna N/A N/A N/A 41603730
    1067492 9y4h:CV (4.7) BS01 rna N/A N/A N/A 41603730
    1067493 9y4h:CV (4.7) BS02 rna N/A N/A N/A 41603730
    1067494 9y4h:CW (4.7) BS01 rna N/A N/A N/A 41603730
    1067495 9y4h:CW (4.7) BS02 rna N/A N/A N/A 41603730
    1067496 9y4h:CX (4.7) BS01 rna N/A N/A N/A 41603730
    1067497 9y4h:CX (4.7) BS02 rna N/A N/A N/A 41603730
    1067498 9y4h:CY (4.7) BS01 rna N/A N/A N/A 41603730
    1067499 9y4h:CY (4.7) BS02 rna N/A N/A N/A 41603730
    1067500 9y4h:CZ (4.7) BS01 rna N/A N/A N/A 41603730
    1067501 9y4h:Ca (4.7) BS01 rna N/A N/A N/A 41603730
    1067502 9y4h:Cb (4.7) BS01 rna N/A N/A N/A 41603730
    1067503 9y4h:Cc (4.7) BS01 rna N/A N/A N/A 41603730
    1067504 9y4h:Cd (4.7) BS01 rna N/A N/A N/A 41603730
    1067505 9y4h:Ce (4.7) BS01 rna N/A N/A N/A 41603730
    1067506 9y4h:Cf (4.7) BS01 rna N/A N/A N/A 41603730
    1067507 9y4h:Cg (4.7) BS01 rna N/A N/A N/A 41603730
    1067508 9y4h:Ch (4.7) BS01 rna N/A N/A N/A 41603730
    1067509 9y4h:Ch (4.7) BS02 rna N/A N/A N/A 41603730
    1067510 9y4h:Ci (4.7) BS01 rna N/A N/A N/A 41603730
    1067511 9y4h:Cj (4.7) BS01 rna N/A N/A N/A 41603730
    1067512 9y4h:Cj (4.7) BS02 rna N/A N/A N/A 41603730
    1067513 9y4h:Ck (4.7) BS01 rna N/A N/A N/A 41603730
    1067514 9y4h:Cl (4.7) BS01 rna N/A N/A N/A 41603730
    1067515 9y4h:Cl (4.7) BS02 rna N/A N/A N/A 41603730
    1067516 9y4h:Cm (4.7) BS01 rna N/A N/A N/A 41603730
    1067517 9y4h:Co (4.7) BS01 rna N/A N/A N/A 41603730
    1067518 9y4h:Co (4.7) BS02 rna N/A N/A N/A 41603730
    1067519 9y4h:Cp (4.7) BS01 rna N/A N/A N/A 41603730
    1067520 9y4h:Cp (4.7) BS02 rna N/A N/A N/A 41603730
    1067521 9y4h:Cr (4.7) BS01 rna N/A N/A N/A 41603730
    1067522 9y4p:A (3.84) BS01 dna N/A GO:0000786 ... A0A310TTQ1 N/A
    1067523 9y4p:A (3.84) BS02 dna N/A GO:0000786 ... A0A310TTQ1 N/A
    1067524 9y4p:B (3.84) BS01 dna N/A GO:0000786 ... P62799 N/A
    1067525 9y4p:B (3.84) BS02 dna N/A GO:0000786 ... P62799 N/A
    1067526 9y4p:C (3.84) BS01 dna N/A GO:0000786 ... P06897 N/A
    1067527 9y4p:C (3.84) BS02 dna N/A GO:0000786 ... P06897 N/A
    1067528 9y4p:D (3.84) BS01 dna N/A GO:0000786 ... P02281 N/A
    1067529 9y4p:D (3.84) BS02 dna N/A GO:0000786 ... P02281 N/A
    1067530 9y4p:E (3.84) BS01 dna N/A GO:0000786 ... P84233 N/A
    1067531 9y4p:E (3.84) BS02 dna N/A GO:0000786 ... P84233 N/A
    1067532 9y4p:F (3.84) BS01 dna N/A GO:0000786 ... P62799 N/A
    1067533 9y4p:F (3.84) BS02 dna N/A GO:0000786 ... P62799 N/A
    1067534 9y4p:G (3.84) BS01 dna N/A GO:0000786 ... P06897 N/A
    1067535 9y4p:G (3.84) BS02 dna N/A GO:0000786 ... P06897 N/A
    1067536 9y4p:H (3.84) BS01 dna N/A GO:0000786 ... P02281 N/A
    1067537 9y4p:H (3.84) BS02 dna N/A GO:0000786 ... P02281 N/A
    1067538 9y4p:P (3.84) BS01 dna N/A GO:0000786 ... P02281 N/A
    1067539 9y4p:P (3.84) BS02 dna N/A GO:0000786 ... P02281 N/A
    1067540 9y4p:Q (3.84) BS01 dna N/A GO:0000786 ... P84233 N/A
    1067541 9y4p:Q (3.84) BS02 dna N/A GO:0000786 ... P84233 N/A
    1067542 9y4p:R (3.84) BS01 dna N/A GO:0000786 ... P62799 N/A
    1067543 9y4p:R (3.84) BS02 dna N/A GO:0000786 ... P62799 N/A
    1067544 9y4p:S (3.84) BS01 dna N/A GO:0000786 ... P06897 N/A
    1067545 9y4p:S (3.84) BS02 dna N/A GO:0000786 ... P06897 N/A
    1067546 9y4p:T (3.84) BS01 dna N/A GO:0000786 ... P02281 N/A
    1067547 9y4p:W (3.84) BS01 dna N/A GO:0000786 ... P84233 N/A
    1067548 9y4p:W (3.84) BS02 dna N/A GO:0000786 ... P84233 N/A
    1067549 9y4p:X (3.84) BS01 dna N/A GO:0000786 ... P62799 N/A
    1067550 9y4p:X (3.84) BS02 dna N/A GO:0000786 ... P62799 N/A
    1067551 9y4p:Y (3.84) BS01 dna N/A GO:0000786 ... P06897 N/A
    1067552 9y4p:Y (3.84) BS02 dna N/A GO:0000786 ... P06897 N/A
    1067553 9y4p:a (3.84) BS01 dna N/A N/A Q9Y6K1 N/A
    1067554 9y4p:a (3.84) BS02 ZN N/A N/A Q9Y6K1 N/A
    1067555 9y4p:a (3.84) BS03 ZN N/A N/A Q9Y6K1 N/A
    1067556 9y4p:a (3.84) BS04 ZN N/A N/A Q9Y6K1 N/A
    1067557 9y4p:a (3.84) BS05 SAH N/A N/A Q9Y6K1 N/A
    1067558 9y4p:b (3.84) BS01 ZN N/A N/A Q9UBC3 N/A
    1067559 9y4p:b (3.84) BS02 ZN N/A N/A Q9UBC3 N/A
    1067560 9y4p:c (3.84) BS01 ZN N/A N/A Q9Y6K1 N/A
    1067561 9y4p:c (3.84) BS02 ZN N/A N/A Q9Y6K1 N/A
    1067562 9y4p:c (3.84) BS03 ZN N/A N/A Q9Y6K1 N/A
    1067563 9y4p:c (3.84) BS04 SAH N/A N/A Q9Y6K1 N/A
    1067564 9y4p:d (3.84) BS01 ZN N/A N/A Q9Y6K1 N/A
    1067565 9y4p:d (3.84) BS02 ZN N/A N/A Q9Y6K1 N/A
    1067566 9y4p:d (3.84) BS03 SAH N/A N/A Q9Y6K1 N/A
    1067567 9y4p:e (3.84) BS01 ZN N/A N/A Q9UBC3 N/A
    1067568 9y4p:e (3.84) BS02 ZN N/A N/A Q9UBC3 N/A
    1067569 9y4p:f (3.84) BS01 dna N/A N/A Q9Y6K1 N/A
    1067570 9y4p:f (3.84) BS02 dna N/A N/A Q9Y6K1 N/A
    1067571 9y4p:f (3.84) BS03 ZN N/A N/A Q9Y6K1 N/A
    1067572 9y4p:f (3.84) BS04 ZN N/A N/A Q9Y6K1 N/A
    1067573 9y4p:f (3.84) BS05 ZN N/A N/A Q9Y6K1 N/A
    1067574 9y4p:f (3.84) BS06 SAH N/A N/A Q9Y6K1 N/A
    1067575 9y4q:A (1.48) BS01 A1CR9 N/A N/A Q9Y4B6 N/A
    1067576 9y4q:B (1.48) BS01 A1CR9 N/A N/A Q9Y4B6 N/A
    1067577 9y4s:A (2.89) BS01 2BA N/A GO:0003677 ... P9WNW5 N/A
    1067578 9y4s:B (2.89) BS01 2BA N/A GO:0003677 ... P9WNW5 N/A
    1067579 9y4s:C (2.89) BS01 2BA N/A GO:0003677 ... P9WNW5 N/A
    1067580 9y4s:D (2.89) BS01 2BA N/A GO:0003677 ... P9WNW5 N/A
    1067581 9y4s:E (2.89) BS01 2BA N/A GO:0003677 ... P9WNW5 N/A
    1067582 9y4s:F (2.89) BS01 2BA N/A GO:0003677 ... P9WNW5 N/A
    1067583 9y4s:G (2.89) BS01 2BA N/A GO:0003677 ... P9WNW5 N/A
    1067584 9y4s:H (2.89) BS01 2BA N/A GO:0003677 ... P9WNW5 N/A
    1067585 9y4u:A (1.9) BS01 NAD N/A GO:0006006 ... B4RPP8 N/A
    1067586 9y4u:B (1.9) BS01 NAD N/A GO:0006006 ... B4RPP8 N/A
    1067587 9y51:A (1.73) BS01 M0J N/A GO:0004386 ... Q32ZE1 N/A
    1067588 9y52:A (3.46) BS01 ADP N/A GO:0000287 ... P68135 N/A
    1067589 9y52:B (3.46) BS01 ADP N/A GO:0000287 ... P68135 N/A
    1067590 9y52:C (3.46) BS01 ADP N/A GO:0000287 ... P68135 N/A
    1067591 9y52:D (3.46) BS01 ADP N/A GO:0000287 ... P68135 N/A
    1067592 9y52:E (3.46) BS01 ADP N/A GO:0000287 ... P68135 N/A
    1067593 9y5q:A (4.73) BS01 A1B92 N/A GO:0005516 ... O15554 41507196
    1067594 9y5q:C (4.73) BS01 A1B92 N/A GO:0005516 ... O15554 41507196
    1067595 9y5q:D (4.73) BS01 A1B92 N/A GO:0005516 ... O15554 41507196
    1067596 9y5q:E (4.73) BS01 A1B92 N/A GO:0000922 ... P0DP23 41507196
    1067597 9y5q:E (4.73) BS02 CA N/A GO:0000922 ... P0DP23 41507196
    1067598 9y5q:F (4.73) BS01 CA N/A GO:0000922 ... P0DP23 41507196
    1067599 9y5q:G (4.73) BS01 CA N/A GO:0000922 ... P0DP23 41507196
    1067600 9y5q:H (4.73) BS01 A1B92 N/A GO:0000922 ... P0DP23 41507196

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).