SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1069201 9yc0:G (2.37) BS03 CO3 N/A N/A Q8IL11 41525497
    1069202 9yc0:G (2.37) BS04 A1CT5 N/A N/A Q8IL11 41525497
    1069203 9yc0:H (2.37) BS01 ZN N/A N/A Q8IL11 41525497
    1069204 9yc0:H (2.37) BS02 ZN N/A N/A Q8IL11 41525497
    1069205 9yc0:H (2.37) BS03 CO3 N/A N/A Q8IL11 41525497
    1069206 9yc0:H (2.37) BS04 A1CT4 N/A N/A Q8IL11 41525497
    1069207 9yc0:I (2.37) BS01 ZN N/A N/A Q8IL11 41525497
    1069208 9yc0:I (2.37) BS02 ZN N/A N/A Q8IL11 41525497
    1069209 9yc0:I (2.37) BS03 CO3 N/A N/A Q8IL11 41525497
    1069210 9yc0:I (2.37) BS04 A1CT4 N/A N/A Q8IL11 41525497
    1069211 9yc0:J (2.37) BS01 ZN N/A N/A Q8IL11 41525497
    1069212 9yc0:J (2.37) BS02 ZN N/A N/A Q8IL11 41525497
    1069213 9yc0:J (2.37) BS03 CO3 N/A N/A Q8IL11 41525497
    1069214 9yc0:J (2.37) BS04 A1CT4 N/A N/A Q8IL11 41525497
    1069215 9yc0:K (2.37) BS01 ZN N/A N/A Q8IL11 41525497
    1069216 9yc0:K (2.37) BS02 ZN N/A N/A Q8IL11 41525497
    1069217 9yc0:K (2.37) BS03 CO3 N/A N/A Q8IL11 41525497
    1069218 9yc0:K (2.37) BS04 A1CT4 N/A N/A Q8IL11 41525497
    1069219 9yc0:L (2.37) BS01 ZN N/A N/A Q8IL11 41525497
    1069220 9yc0:L (2.37) BS02 ZN N/A N/A Q8IL11 41525497
    1069221 9yc0:L (2.37) BS03 CO3 N/A N/A Q8IL11 41525497
    1069222 9yc0:L (2.37) BS04 A1CT4 N/A N/A Q8IL11 41525497
    1069223 9yc2:A (1.4) BS01 ZN N/A GO:0008270 ... Q70CQ1 N/A
    1069224 9yc2:A (1.4) BS02 ZN N/A GO:0008270 ... Q70CQ1 N/A
    1069225 9yc2:A (1.4) BS03 ZN N/A GO:0008270 ... Q70CQ1 N/A
    1069226 9yc7:A (2.37) BS01 ZN N/A N/A Q8IL11 41525497
    1069227 9yc7:A (2.37) BS02 CO3 N/A N/A Q8IL11 41525497
    1069228 9yc7:A (2.37) BS03 ZN N/A N/A Q8IL11 41525497
    1069229 9yc7:A (2.37) BS04 A1CTH N/A N/A Q8IL11 41525497
    1069230 9yc7:B (2.37) BS01 CO3 N/A N/A Q8IL11 41525497
    1069231 9yc7:B (2.37) BS02 ZN N/A N/A Q8IL11 41525497
    1069232 9yc7:C (2.37) BS01 ZN N/A N/A Q8IL11 41525497
    1069233 9yc7:C (2.37) BS02 ZN N/A N/A Q8IL11 41525497
    1069234 9yc7:C (2.37) BS03 CO3 N/A N/A Q8IL11 41525497
    1069235 9yc7:D (2.37) BS01 ZN N/A N/A Q8IL11 41525497
    1069236 9yc7:D (2.37) BS02 CO3 N/A N/A Q8IL11 41525497
    1069237 9yc7:D (2.37) BS03 ZN N/A N/A Q8IL11 41525497
    1069238 9yc7:E (2.37) BS01 ZN N/A N/A Q8IL11 41525497
    1069239 9yc7:E (2.37) BS02 CO3 N/A N/A Q8IL11 41525497
    1069240 9yc7:F (2.37) BS01 ZN N/A N/A Q8IL11 41525497
    1069241 9yc7:F (2.37) BS02 ZN N/A N/A Q8IL11 41525497
    1069242 9yc7:F (2.37) BS03 CO3 N/A N/A Q8IL11 41525497
    1069243 9yc7:G (2.37) BS01 ZN N/A N/A Q8IL11 41525497
    1069244 9yc7:G (2.37) BS02 CO3 N/A N/A Q8IL11 41525497
    1069245 9yc7:H (2.37) BS01 ZN N/A N/A Q8IL11 41525497
    1069246 9yc7:H (2.37) BS02 CO3 N/A N/A Q8IL11 41525497
    1069247 9yc7:I (2.37) BS01 CO3 N/A N/A Q8IL11 41525497
    1069248 9yc7:J (2.37) BS01 ZN N/A N/A Q8IL11 41525497
    1069249 9yc7:J (2.37) BS02 CO3 N/A N/A Q8IL11 41525497
    1069250 9yc7:K (2.37) BS01 ZN N/A N/A Q8IL11 41525497
    1069251 9yc7:K (2.37) BS02 ZN N/A N/A Q8IL11 41525497
    1069252 9yc7:K (2.37) BS03 CO3 N/A N/A Q8IL11 41525497
    1069253 9yc7:L (2.37) BS01 ZN N/A N/A Q8IL11 41525497
    1069254 9yc7:L (2.37) BS02 CO3 N/A N/A Q8IL11 41525497
    1069255 9yc9:A (3.8) BS01 dna N/A GO:0000166 ... A0A5J6DVR7 N/A
    1069256 9yc9:A (3.8) BS02 A1BXB N/A GO:0000166 ... A0A5J6DVR7 N/A
    1069257 9yc9:C (3.8) BS01 ZN N/A GO:0004386 ... A0A5J6DWG4 N/A
    1069258 9yc9:C (3.8) BS02 A1BXB N/A GO:0004386 ... A0A5J6DWG4 N/A
    1069259 9yc9:E (3.8) BS01 dna N/A GO:0000166 ... H9E937 N/A
    1069260 9yc9:E (3.8) BS02 dna N/A GO:0000166 ... H9E937 N/A
    1069261 9yc9:E (3.8) BS03 dna N/A GO:0000166 ... H9E937 N/A
    1069262 9yc9:F (3.8) BS01 dna N/A GO:0003677 ... A0A2Z4HDW2 N/A
    1069263 9yck:A (2.8) BS01 ZN N/A N/A K9N7C7 41361186
    1069264 9yck:A (2.8) BS02 ZN N/A N/A K9N7C7 41361186
    1069265 9yck:B (2.8) BS01 rna N/A N/A K9N7C7 41361186
    1069266 9yck:B (2.8) BS02 MG N/A N/A K9N7C7 41361186
    1069267 9yck:B (2.8) BS03 ZN N/A N/A K9N7C7 41361186
    1069268 9yck:B (2.8) BS04 ZN N/A N/A K9N7C7 41361186
    1069269 9yck:B (2.8) BS05 ZN N/A N/A K9N7C7 41361186
    1069270 9ycl:A (2.5) BS01 ZN N/A N/A K9N7C7 41361186
    1069271 9ycl:A (2.5) BS02 ZN N/A N/A K9N7C7 41361186
    1069272 9ycl:B (2.5) BS01 rna N/A N/A K9N7C7 41361186
    1069273 9ycl:B (2.5) BS02 MG N/A N/A K9N7C7 41361186
    1069274 9ycl:B (2.5) BS03 ZN N/A N/A K9N7C7 41361186
    1069275 9ycl:B (2.5) BS04 ZN N/A N/A K9N7C7 41361186
    1069276 9ycl:B (2.5) BS05 ZN N/A N/A K9N7C7 41361186
    1069277 9ycl:D (2.5) BS01 ZN N/A N/A K9N7C7 41361186
    1069278 9ycl:D (2.5) BS02 ZN N/A N/A K9N7C7 41361186
    1069279 9ycl:E (2.5) BS01 rna N/A N/A K9N7C7 41361186
    1069280 9ycl:E (2.5) BS02 MG N/A N/A K9N7C7 41361186
    1069281 9ycl:E (2.5) BS03 ZN N/A N/A K9N7C7 41361186
    1069282 9ycl:E (2.5) BS04 ZN N/A N/A K9N7C7 41361186
    1069283 9ycl:E (2.5) BS05 ZN N/A N/A K9N7C7 41361186
    1069284 9ycm:A (2.94) BS01 ZN N/A N/A K9N7C7 41361186
    1069285 9ycm:B (2.94) BS01 rna N/A N/A K9N7C7 41361186
    1069286 9ycm:B (2.94) BS02 rna N/A N/A K9N7C7 41361186
    1069287 9ycm:B (2.94) BS03 MG N/A N/A K9N7C7 41361186
    1069288 9ycm:B (2.94) BS04 ZN N/A N/A K9N7C7 41361186
    1069289 9ycm:B (2.94) BS05 ZN N/A N/A K9N7C7 41361186
    1069290 9ycm:B (2.94) BS06 ZN N/A N/A K9N7C7 41361186
    1069291 9ycm:D (2.94) BS01 ZN N/A N/A K9N7C7 41361186
    1069292 9ycm:E (2.94) BS01 rna N/A N/A K9N7C7 41361186
    1069293 9ycm:E (2.94) BS02 rna N/A N/A K9N7C7 41361186
    1069294 9ycm:E (2.94) BS03 MG N/A N/A K9N7C7 41361186
    1069295 9ycm:E (2.94) BS04 ZN N/A N/A K9N7C7 41361186
    1069296 9ycm:E (2.94) BS05 ZN N/A N/A K9N7C7 41361186
    1069297 9ycm:E (2.94) BS06 ZN N/A N/A K9N7C7 41361186
    1069298 9ycn:A (2.88) BS01 rna N/A N/A K9N7C7 41361186
    1069299 9ycn:A (2.88) BS02 ZN N/A N/A K9N7C7 41361186
    1069300 9ycn:A (2.88) BS03 ZN N/A N/A K9N7C7 41361186
    1069301 9ycn:B (2.88) BS01 rna N/A N/A K9N7C7 41361186
    1069302 9ycn:B (2.88) BS02 MG N/A N/A K9N7C7 41361186
    1069303 9ycn:B (2.88) BS03 ZN N/A N/A K9N7C7 41361186
    1069304 9ycn:B (2.88) BS04 ZN N/A N/A K9N7C7 41361186
    1069305 9ycn:B (2.88) BS05 ZN N/A N/A K9N7C7 41361186
    1069306 9yco:A (2.88) BS01 rna N/A N/A K9N7C7 41361186
    1069307 9yco:A (2.88) BS02 ZN N/A N/A K9N7C7 41361186
    1069308 9yco:A (2.88) BS03 ZN N/A N/A K9N7C7 41361186
    1069309 9yco:B (2.88) BS01 rna N/A N/A K9N7C7 41361186
    1069310 9yco:B (2.88) BS02 MG N/A N/A K9N7C7 41361186
    1069311 9yco:B (2.88) BS03 ZN N/A N/A K9N7C7 41361186
    1069312 9yco:B (2.88) BS04 ZN N/A N/A K9N7C7 41361186
    1069313 9ycp:A (2.9) BS01 dna N/A GO:0000166 ... A0A5J6DVR7 N/A
    1069314 9ycp:A (2.9) BS02 A1CHB N/A GO:0000166 ... A0A5J6DVR7 N/A
    1069315 9ycp:C (2.9) BS01 ZN N/A GO:0004386 ... A0A5J6DWG4 N/A
    1069316 9ycp:C (2.9) BS02 A1CHB N/A GO:0004386 ... A0A5J6DWG4 N/A
    1069317 9yct:A (3.7) BS01 dna N/A GO:0000166 ... A0A5J6DVR7 N/A
    1069318 9yct:A (3.7) BS02 A1BXB N/A GO:0000166 ... A0A5J6DVR7 N/A
    1069319 9yct:C (3.7) BS01 ZN N/A GO:0004386 ... A0A5J6DWG4 N/A
    1069320 9yct:C (3.7) BS02 A1BXB N/A GO:0004386 ... A0A5J6DWG4 N/A
    1069321 9ycv:A (2.8) BS01 dna N/A GO:0000166 ... A0A5J6DVR7 N/A
    1069322 9ycv:A (2.8) BS02 A1BXD N/A GO:0000166 ... A0A5J6DVR7 N/A
    1069323 9ycv:C (2.8) BS01 ZN N/A GO:0004386 ... A0A5J6DWG4 N/A
    1069324 9ycv:C (2.8) BS02 A1BXD N/A GO:0004386 ... A0A5J6DWG4 N/A
    1069325 9yd7:A (1.87) BS01 NCD N/A GO:0004038 ... Q58885 41355244
    1069326 9yd7:A (1.87) BS02 ZN N/A GO:0004038 ... Q58885 41355244
    1069327 9yd7:A (1.87) BS03 ZN N/A GO:0004038 ... Q58885 41355244
    1069328 9yd7:A (1.87) BS04 ZN N/A GO:0004038 ... Q58885 41355244
    1069329 9yd7:A (1.87) BS05 ZN N/A GO:0004038 ... Q58885 41355244
    1069330 9yd7:A (1.87) BS06 ZN N/A GO:0004038 ... Q58885 41355244
    1069331 9yd7:A (1.87) BS07 ZN N/A GO:0004038 ... Q58885 41355244
    1069332 9yd7:A (1.87) BS08 ZN N/A GO:0004038 ... Q58885 41355244
    1069333 9yd8:A (2.45) BS01 MG N/A GO:0004620 ... Q59121 N/A
    1069334 9yd8:B (2.45) BS01 MG N/A GO:0004620 ... Q59121 N/A
    1069335 9yda:R (2.9) BS01 RET N/A GO:0001750 ... P04001 41329744
    1069336 9ydg:A (1.54) BS01 A1CU7 N/A GO:0016567 ... Q9Y4B6 N/A
    1069337 9ydg:B (1.54) BS01 A1CU7 N/A GO:0016567 ... Q9Y4B6 N/A
    1069338 9ydm:A (1.99) BS01 A1CU3 N/A N/A Q9Y2R2 41585704
    1069339 9ydm:B (1.99) BS01 A1CU3 N/A N/A Q9Y2R2 41585704
    1069340 9ydp:R (1.95) BS01 peptide N/A GO:0004985 ... P41143 41280124
    1069341 9ydq:R (1.94) BS01 peptide N/A GO:0004985 ... A0A6D2YBI2 41280124
    1069342 9ydq:R (1.94) BS02 A1CVG N/A GO:0004985 ... A0A6D2YBI2 41280124
    1069343 9ydr:R (2.14) BS01 peptide N/A GO:0004985 ... A0A6D2YBI2 41280124
    1069344 9ydr:R (2.14) BS02 A1CU8 N/A GO:0004985 ... A0A6D2YBI2 41280124
    1069345 9ydu:A (3.19) BS01 UPG N/A GO:0005886 ... Q15391 41272298
    1069346 9ydv:A (3.05) BS01 A1CVS N/A GO:0005886 ... Q15391 41272298
    1069347 9ye4:A (1.74) BS01 A1CVQ N/A GO:0016567 ... Q9Y4B6 N/A
    1069348 9ye4:B (1.74) BS01 A1CVQ N/A GO:0016567 ... Q9Y4B6 N/A
    1069349 9yfb:A (1.82) BS01 UTP N/A GO:0003983 ... Q7VTV0 N/A
    1069350 9yfi:A (1.8) BS01 UPG N/A GO:0003983 ... Q7VTV0 N/A
    1069351 9yfi:B (1.8) BS01 UPG N/A GO:0003983 ... Q7VTV0 N/A
    1069352 9yfk:A (1.68) BS01 UPG N/A GO:0003983 ... Q7VTV0 N/A
    1069353 9yfk:B (1.68) BS01 UPG N/A GO:0003983 ... Q7VTV0 N/A
    1069354 9yfl:A (2.9) BS01 rna N/A GO:0000495 ... A0A7E5VBG0 41410763
    1069355 9yfl:C (2.9) BS01 rna N/A N/A A0A7E5W3Q7 41410763
    1069356 9yfl:D (2.9) BS01 rna N/A GO:0000495 ... A0A7E5VBG0 41410763
    1069357 9yfl:F (2.9) BS01 rna N/A GO:0005730 ... A0A7E5W2Q0 41410763
    1069358 9yfl:G (2.9) BS01 rna N/A N/A A0A7E5W3Q7 41410763
    1069359 9yfl:H (2.9) BS01 rna N/A GO:0005730 ... A0A7E5W2Q0 41410763
    1069360 9yfm:A (2.95) BS01 rna N/A GO:0000495 ... A0A7E5VBG0 41410763
    1069361 9yfm:C (2.95) BS01 rna N/A N/A A0A7E5W3Q7 41410763
    1069362 9yfm:D (2.95) BS01 rna N/A GO:0000495 ... A0A7E5VBG0 41410763
    1069363 9yfm:F (2.95) BS01 rna N/A GO:0005730 ... A0A7E5W2Q0 41410763
    1069364 9yfm:G (2.95) BS01 rna N/A N/A A0A7E5W3Q7 41410763
    1069365 9yfm:H (2.95) BS01 rna N/A GO:0005730 ... A0A7E5W2Q0 41410763
    1069366 9yfn:A (3.14) BS01 rna N/A GO:0000495 ... A0A7E5VBG0 41410763
    1069367 9yfn:D (3.14) BS01 rna N/A GO:0000495 ... A0A7E5VBG0 41410763
    1069368 9yfn:F (3.14) BS01 rna N/A GO:0005730 ... A0A7E5W2Q0 41410763
    1069369 9yfn:G (3.14) BS01 rna N/A N/A A0A7E5W3Q7 41410763
    1069370 9yfo:A (3.23) BS01 rna N/A GO:0000495 ... A0A7E5VBG0 41410763
    1069371 9yfo:C (3.23) BS01 rna N/A N/A A0A7E5W3Q7 41410763
    1069372 9yfo:D (3.23) BS01 rna N/A GO:0000495 ... A0A7E5VBG0 41410763
    1069373 9yfo:F (3.23) BS01 rna N/A GO:0005730 ... A0A7E5W2Q0 41410763
    1069374 9yfo:G (3.23) BS01 rna N/A N/A A0A7E5W3Q7 41410763
    1069375 9yfo:H (3.23) BS01 rna N/A GO:0005730 ... A0A7E5W2Q0 41410763
    1069376 9yfu:R (3.08) BS01 A1CWB N/A N/A P0ABE7
    Q9BZJ8
    41834467
    1069377 9yfx:A (2.7) BS01 C5P N/A N/A A0A854BIM6 41539565
    1069378 9yfx:B (2.7) BS01 C5P N/A N/A A0A854BIM6 41539565
    1069379 9yfx:C (2.7) BS01 C5P N/A N/A A0A854BIM6 41539565
    1069380 9yfy:A (2.03) BS01 C5P N/A N/A A0A854BIM6 41539565
    1069381 9yfy:B (2.03) BS01 C5P N/A N/A A0A854BIM6 41539565
    1069382 9yfy:B (2.03) BS02 GLY N/A N/A A0A854BIM6 41539565
    1069383 9yfz:A (2.21) BS01 A1CWR N/A N/A A0A854BIM6 41539565
    1069384 9yfz:A (2.21) BS02 BDR N/A N/A A0A854BIM6 41539565
    1069385 9yfz:A (2.21) BS03 C5P N/A N/A A0A854BIM6 41539565
    1069386 9yfz:B (2.21) BS01 A1CWR N/A N/A A0A854BIM6 41539565
    1069387 9yfz:B (2.21) BS02 BDR N/A N/A A0A854BIM6 41539565
    1069388 9yfz:B (2.21) BS03 C5P N/A N/A A0A854BIM6 41539565
    1069389 9yg0:A (1.76) BS01 MG N/A N/A Q9Y2R2 41585704
    1069390 9yg0:A (1.76) BS02 A1CWM N/A N/A Q9Y2R2 41585704
    1069391 9yg0:B (1.76) BS01 MG N/A N/A Q9Y2R2 41585704
    1069392 9yg0:B (1.76) BS02 MG N/A N/A Q9Y2R2 41585704
    1069393 9yg0:B (1.76) BS03 A1CWM N/A N/A Q9Y2R2 41585704
    1069394 9yg0:C (1.76) BS01 A1CWM N/A N/A Q9Y2R2 41585704
    1069395 9yg0:D (1.76) BS01 A1CWM N/A N/A Q9Y2R2 41585704
    1069396 9yg1:A (1.97) BS01 A1CWL N/A N/A Q9Y2R2 41585704
    1069397 9yg1:B (1.97) BS01 MG N/A N/A Q9Y2R2 41585704
    1069398 9yg1:B (1.97) BS02 MG N/A N/A Q9Y2R2 41585704
    1069399 9yg2:A (2.26) BS01 A1CWK N/A N/A Q9Y2R2 41585704
    1069400 9yg7:A (1.6) BS01 HEM N/A GO:0015671 ... A9DF82 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).