SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1070201 9ypg:AA (3.0) BS01 rna N/A GO:0000028 ... G1TLT8 41350250
    1070202 9ypg:B (3.0) BS01 rna N/A GO:0003723 ... G1TL06 41350250
    1070203 9ypg:BB (3.0) BS01 rna N/A GO:0003735 ... G1SS70 41350250
    1070204 9ypg:C (3.0) BS01 rna N/A GO:0005737 ... G1SVW5 41350250
    1070205 9ypg:C (3.0) BS02 rna N/A GO:0005737 ... G1SVW5 41350250
    1070206 9ypg:CC (3.0) BS01 rna N/A N/A G1SWM1 41350250
    1070207 9ypg:D (3.0) BS01 rna N/A GO:0000027 ... P19949 41350250
    1070208 9ypg:D (3.0) BS02 rna N/A GO:0000027 ... P19949 41350250
    1070209 9ypg:DD (3.0) BS01 rna N/A GO:0003735 ... G1TNM3 41350250
    1070210 9ypg:E (3.0) BS01 rna N/A GO:0000027 ... G1SKF7 41350250
    1070211 9ypg:EE (3.0) BS01 rna N/A GO:0003723 ... G1TK17 41350250
    1070212 9ypg:FF (3.0) BS01 rna N/A GO:0003735 ... G1TFM5 41350250
    1070213 9ypg:FF (3.0) BS02 rna N/A GO:0003735 ... G1TFM5 41350250
    1070214 9ypg:G (3.0) BS01 rna N/A GO:0005737 ... G1STW0 41350250
    1070215 9ypg:G (3.0) BS02 rna N/A GO:0005737 ... G1STW0 41350250
    1070216 9ypg:GG (3.0) BS01 rna N/A GO:0003735 ... G1TM55 41350250
    1070217 9ypg:H (3.0) BS01 rna N/A GO:0002181 ... G1SWI6 41350250
    1070218 9ypg:HH (3.0) BS01 rna N/A GO:0003735 ... G1SVB0 41350250
    1070219 9ypg:I (3.0) BS01 rna N/A GO:0005737 ... B7NZQ2 41350250
    1070220 9ypg:I (3.0) BS02 rna N/A GO:0005737 ... B7NZQ2 41350250
    1070221 9ypg:II (3.0) BS01 rna N/A GO:0003735 ... G1TJW1 41350250
    1070222 9ypg:II (3.0) BS02 rna N/A GO:0003735 ... G1TJW1 41350250
    1070223 9ypg:J (3.0) BS01 rna N/A GO:0005730 ... G1TUB8 41350250
    1070224 9ypg:J (3.0) BS02 rna N/A GO:0005730 ... G1TUB8 41350250
    1070225 9ypg:J (3.0) BS03 rna N/A GO:0005730 ... G1TUB8 41350250
    1070226 9ypg:JJ (3.0) BS01 rna N/A GO:0003735 ... B7NZS8 41350250
    1070227 9ypg:K (3.0) BS01 rna N/A GO:0000463 ... G1TUB1 41350250
    1070228 9ypg:K (3.0) BS02 rna N/A GO:0000463 ... G1TUB1 41350250
    1070229 9ypg:KK (3.0) BS01 rna N/A GO:0003723 ... G1T168 41350250
    1070230 9ypg:L (3.0) BS01 rna N/A N/A N/A 41350250
    1070231 9ypg:L (3.0) BS02 rna N/A N/A N/A 41350250
    1070232 9ypg:LL (3.0) BS01 rna N/A GO:0003735 ... G1TRM4 41350250
    1070233 9ypg:M (3.0) BS01 rna N/A GO:0003723 ... G1SZ12 41350250
    1070234 9ypg:MM (3.0) BS01 rna N/A GO:0003735 ... G1SFR8 41350250
    1070235 9ypg:N (3.0) BS01 rna N/A GO:0002181 ... G1T0C1 41350250
    1070236 9ypg:N (3.0) BS02 rna N/A GO:0002181 ... G1T0C1 41350250
    1070237 9ypg:NN (3.0) BS01 rna N/A GO:0003735 ... G1SP51 41350250
    1070238 9ypg:O (3.0) BS01 rna N/A GO:0003729 ... G1TVS8 41350250
    1070239 9ypg:OO (3.0) BS01 rna N/A GO:0003735 ... G1T1F0 41350250
    1070240 9ypg:P (3.0) BS01 rna N/A GO:0002181 ... G1SCJ6 41350250
    1070241 9ypg:P (3.0) BS02 rna N/A GO:0002181 ... G1SCJ6 41350250
    1070242 9ypg:PP (3.0) BS01 rna N/A GO:0000028 ... G1U0Q2 41350250
    1070243 9ypg:PP (3.0) BS02 rna N/A GO:0000028 ... G1U0Q2 41350250
    1070244 9ypg:Q (3.0) BS01 rna N/A GO:0003723 ... G1TFE0 41350250
    1070245 9ypg:QQ (3.0) BS01 rna N/A GO:0000462 ... G1SGX4 41350250
    1070246 9ypg:R (3.0) BS01 rna N/A GO:0022625 ... G1TJR3 41350250
    1070247 9ypg:R (3.0) BS02 rna N/A GO:0022625 ... G1TJR3 41350250
    1070248 9ypg:RR (3.0) BS01 rna N/A GO:0003735 ... G1TU13 41350250
    1070249 9ypg:S (3.0) BS01 rna N/A N/A G1TTY7 41350250
    1070250 9ypg:S (3.0) BS02 rna N/A N/A G1TTY7 41350250
    1070251 9ypg:SS (3.0) BS01 rna N/A GO:0003735 ... G1TPG3 41350250
    1070252 9ypg:T (3.0) BS01 rna N/A GO:0005737 ... G1SHQ2 41350250
    1070253 9ypg:T (3.0) BS02 rna N/A GO:0005737 ... G1SHQ2 41350250
    1070254 9ypg:TT (3.0) BS01 rna N/A GO:0000028 ... G1TN62 41350250
    1070255 9ypg:U (3.0) BS01 rna N/A GO:0002181 ... G1TSG1 41350250
    1070256 9ypg:UU (3.0) BS01 rna N/A GO:0003735 ... G1SIZ2 41350250
    1070257 9ypg:V (3.0) BS01 rna N/A GO:0000122 ... G1T6D1 41350250
    1070258 9ypg:W (3.0) BS01 rna N/A GO:0002181 ... G1SE28 41350250
    1070259 9ypg:W (3.0) BS02 rna N/A GO:0002181 ... G1SE28 41350250
    1070260 9ypg:WW (3.0) BS01 rna N/A GO:0003735 ... G1TG89 41350250
    1070261 9ypg:X (3.0) BS01 rna N/A GO:0005634 ... G1SE76 41350250
    1070262 9ypg:X (3.0) BS02 rna N/A GO:0005634 ... G1SE76 41350250
    1070263 9ypg:XX (3.0) BS01 rna N/A GO:0003735 ... G1SZ47 41350250
    1070264 9ypg:Y (3.0) BS01 rna N/A GO:0003735 ... G1SQH0 41350250
    1070265 9ypg:Y (3.0) BS02 rna N/A GO:0003735 ... G1SQH0 41350250
    1070266 9ypg:YY (3.0) BS01 rna N/A GO:0005730 ... A0A5F9D2E6 41350250
    1070267 9ypg:Z (3.0) BS01 rna N/A GO:0002181 ... G1TXF6 41350250
    1070268 9ypg:ZZ (3.0) BS01 rna N/A GO:0003735 ... G1TDB3 41350250
    1070269 9ypg:a (3.0) BS01 rna N/A GO:0003735 ... G1SNY0 41350250
    1070270 9ypg:aa (3.0) BS01 rna N/A GO:0003729 ... G1TFE8 41350250
    1070271 9ypg:b (3.0) BS01 rna N/A GO:0002181 ... G1SGR6 41350250
    1070272 9ypg:bb (3.0) BS01 rna N/A GO:0003735 ... G1TZ76 41350250
    1070273 9ypg:c (3.0) BS01 rna N/A GO:0005737 ... G1TDL2 41350250
    1070274 9ypg:cc (3.0) BS01 rna N/A GO:0000028 ... G1TIB4 41350250
    1070275 9ypg:d (3.0) BS01 rna N/A GO:0002181 ... G1SHG0 41350250
    1070276 9ypg:dd (3.0) BS01 rna N/A GO:0002181 ... G1U7M4 41350250
    1070277 9ypg:dd (3.0) BS02 ZN N/A GO:0002181 ... G1U7M4 41350250
    1070278 9ypg:e (3.0) BS01 rna N/A GO:0005737 ... A0AAA9WVN6 41350250
    1070279 9ypg:ee (3.0) BS01 rna N/A GO:0005634 ... G1T8A2 41350250
    1070280 9ypg:ee (3.0) BS02 rna N/A GO:0005634 ... G1T8A2 41350250
    1070281 9ypg:f (3.0) BS01 rna N/A GO:0005737 ... G1SF08 41350250
    1070282 9ypg:ff (3.0) BS01 rna N/A GO:0003735 ... G1SK22 41350250
    1070283 9ypg:g (3.0) BS01 rna N/A GO:0005737 ... G1TXG5 41350250
    1070284 9ypg:g (3.0) BS02 ZN N/A GO:0005737 ... G1TXG5 41350250
    1070285 9ypg:gg (3.0) BS01 rna N/A GO:0001891 ... G1SJB4 41350250
    1070286 9ypg:h (3.0) BS01 rna N/A GO:0000463 ... G1SIT5 41350250
    1070287 9ypg:h (3.0) BS02 rna N/A GO:0000463 ... G1SIT5 41350250
    1070288 9ypg:i (3.0) BS01 rna N/A GO:0005737 ... G1TTQ5 41350250
    1070289 9ypg:j (3.0) BS01 rna N/A GO:0002181 ... U3KPD5 41350250
    1070290 9ypg:j (3.0) BS02 rna N/A GO:0002181 ... U3KPD5 41350250
    1070291 9ypg:j (3.0) BS03 ZN N/A GO:0002181 ... U3KPD5 41350250
    1070292 9ypg:jj (3.0) BS01 rna N/A GO:0000049 ... O00178 41350250
    1070293 9ypg:jj (3.0) BS02 rna N/A GO:0000049 ... O00178 41350250
    1070294 9ypg:jj (3.0) BS03 rna N/A GO:0000049 ... O00178 41350250
    1070295 9ypg:jj (3.0) BS04 GTP N/A GO:0000049 ... O00178 41350250
    1070296 9ypg:jj (3.0) BS05 PHE N/A GO:0000049 ... O00178 41350250
    1070297 9ypg:jj (3.0) BS06 MG N/A GO:0000049 ... O00178 41350250
    1070298 9ypg:k (3.0) BS01 rna N/A GO:0003735 ... G1U3J0 41350250
    1070299 9ypg:l (3.0) BS01 rna N/A GO:0022625 ... G1TTN1 41350250
    1070300 9ypg:l (3.0) BS02 rna N/A GO:0022625 ... G1TTN1 41350250
    1070301 9ypg:m (3.0) BS01 rna N/A N/A P0DXC2 41350250
    1070302 9ypg:m (3.0) BS02 ZN N/A N/A P0DXC2 41350250
    1070303 9ypg:o (3.0) BS01 rna N/A GO:0005737 ... G1T040 41350250
    1070304 9ypg:o (3.0) BS02 rna N/A GO:0005737 ... G1T040 41350250
    1070305 9ypg:o (3.0) BS03 ZN N/A GO:0005737 ... G1T040 41350250
    1070306 9ypg:p (3.0) BS01 rna N/A GO:0005737 ... G1SY53 41350250
    1070307 9ypg:p (3.0) BS02 ZN N/A GO:0005737 ... G1SY53 41350250
    1070308 9ypg:r (3.0) BS01 rna N/A GO:0005737 ... G1U7L1 41350250
    1070309 9ypo:A (3.0) BS01 rna N/A GO:0002181 ... G1TT27 41350250
    1070310 9ypo:A (3.0) BS02 rna N/A GO:0002181 ... G1TT27 41350250
    1070311 9ypo:AA (3.0) BS01 rna N/A GO:0000028 ... G1TLT8 41350250
    1070312 9ypo:B (3.0) BS01 rna N/A GO:0003723 ... G1TL06 41350250
    1070313 9ypo:BB (3.0) BS01 rna N/A GO:0003735 ... G1SS70 41350250
    1070314 9ypo:C (3.0) BS01 rna N/A GO:0005737 ... G1SVW5 41350250
    1070315 9ypo:C (3.0) BS02 rna N/A GO:0005737 ... G1SVW5 41350250
    1070316 9ypo:CC (3.0) BS01 rna N/A N/A G1SWM1 41350250
    1070317 9ypo:D (3.0) BS01 rna N/A GO:0000027 ... P19949 41350250
    1070318 9ypo:D (3.0) BS02 rna N/A GO:0000027 ... P19949 41350250
    1070319 9ypo:DD (3.0) BS01 rna N/A GO:0003735 ... G1TNM3 41350250
    1070320 9ypo:E (3.0) BS01 rna N/A GO:0000027 ... G1SKF7 41350250
    1070321 9ypo:EE (3.0) BS01 rna N/A GO:0003723 ... G1TK17 41350250
    1070322 9ypo:FF (3.0) BS01 rna N/A GO:0003735 ... G1TFM5 41350250
    1070323 9ypo:FF (3.0) BS02 rna N/A GO:0003735 ... G1TFM5 41350250
    1070324 9ypo:G (3.0) BS01 rna N/A GO:0005737 ... G1STW0 41350250
    1070325 9ypo:G (3.0) BS02 rna N/A GO:0005737 ... G1STW0 41350250
    1070326 9ypo:GG (3.0) BS01 rna N/A GO:0003735 ... G1TM55 41350250
    1070327 9ypo:H (3.0) BS01 rna N/A GO:0002181 ... G1SWI6 41350250
    1070328 9ypo:HH (3.0) BS01 rna N/A GO:0003735 ... G1SVB0 41350250
    1070329 9ypo:I (3.0) BS01 rna N/A GO:0005737 ... B7NZQ2 41350250
    1070330 9ypo:I (3.0) BS02 rna N/A GO:0005737 ... B7NZQ2 41350250
    1070331 9ypo:II (3.0) BS01 rna N/A GO:0003735 ... G1TJW1 41350250
    1070332 9ypo:II (3.0) BS02 rna N/A GO:0003735 ... G1TJW1 41350250
    1070333 9ypo:J (3.0) BS01 rna N/A GO:0005730 ... G1TUB8 41350250
    1070334 9ypo:J (3.0) BS02 rna N/A GO:0005730 ... G1TUB8 41350250
    1070335 9ypo:J (3.0) BS03 rna N/A GO:0005730 ... G1TUB8 41350250
    1070336 9ypo:JJ (3.0) BS01 rna N/A GO:0003735 ... B7NZS8 41350250
    1070337 9ypo:K (3.0) BS01 rna N/A GO:0000463 ... G1TUB1 41350250
    1070338 9ypo:K (3.0) BS02 rna N/A GO:0000463 ... G1TUB1 41350250
    1070339 9ypo:KK (3.0) BS01 rna N/A GO:0003723 ... G1T168 41350250
    1070340 9ypo:L (3.0) BS01 rna N/A N/A N/A 41350250
    1070341 9ypo:L (3.0) BS02 rna N/A N/A N/A 41350250
    1070342 9ypo:LL (3.0) BS01 rna N/A GO:0003735 ... G1TRM4 41350250
    1070343 9ypo:M (3.0) BS01 rna N/A GO:0003723 ... G1SZ12 41350250
    1070344 9ypo:MM (3.0) BS01 rna N/A GO:0003735 ... G1SFR8 41350250
    1070345 9ypo:N (3.0) BS01 rna N/A GO:0002181 ... G1T0C1 41350250
    1070346 9ypo:N (3.0) BS02 rna N/A GO:0002181 ... G1T0C1 41350250
    1070347 9ypo:NN (3.0) BS01 rna N/A GO:0003735 ... G1SP51 41350250
    1070348 9ypo:O (3.0) BS01 rna N/A GO:0003729 ... G1TVS8 41350250
    1070349 9ypo:OO (3.0) BS01 rna N/A GO:0003735 ... A0AAA9WYR1 41350250
    1070350 9ypo:P (3.0) BS01 rna N/A GO:0002181 ... G1SCJ6 41350250
    1070351 9ypo:P (3.0) BS02 rna N/A GO:0002181 ... G1SCJ6 41350250
    1070352 9ypo:PP (3.0) BS01 rna N/A GO:0000028 ... G1U0Q2 41350250
    1070353 9ypo:PP (3.0) BS02 rna N/A GO:0000028 ... G1U0Q2 41350250
    1070354 9ypo:Q (3.0) BS01 rna N/A GO:0003723 ... G1TFE0 41350250
    1070355 9ypo:QQ (3.0) BS01 rna N/A GO:0000462 ... G1SGX4 41350250
    1070356 9ypo:R (3.0) BS01 rna N/A GO:0022625 ... G1TJR3 41350250
    1070357 9ypo:R (3.0) BS02 rna N/A GO:0022625 ... G1TJR3 41350250
    1070358 9ypo:RR (3.0) BS01 rna N/A GO:0003735 ... G1TU13 41350250
    1070359 9ypo:S (3.0) BS01 rna N/A N/A G1TTY7 41350250
    1070360 9ypo:S (3.0) BS02 rna N/A N/A G1TTY7 41350250
    1070361 9ypo:SS (3.0) BS01 rna N/A GO:0003735 ... G1TPG3 41350250
    1070362 9ypo:T (3.0) BS01 rna N/A GO:0005737 ... G1SHQ2 41350250
    1070363 9ypo:T (3.0) BS02 rna N/A GO:0005737 ... G1SHQ2 41350250
    1070364 9ypo:TT (3.0) BS01 rna N/A GO:0000028 ... G1TN62 41350250
    1070365 9ypo:U (3.0) BS01 rna N/A GO:0002181 ... G1TSG1 41350250
    1070366 9ypo:UU (3.0) BS01 rna N/A GO:0003735 ... G1SIZ2 41350250
    1070367 9ypo:V (3.0) BS01 rna N/A GO:0000122 ... G1T6D1 41350250
    1070368 9ypo:W (3.0) BS01 rna N/A GO:0002181 ... G1SE28 41350250
    1070369 9ypo:W (3.0) BS02 rna N/A GO:0002181 ... G1SE28 41350250
    1070370 9ypo:WW (3.0) BS01 rna N/A GO:0003735 ... G1TG89 41350250
    1070371 9ypo:X (3.0) BS01 rna N/A GO:0005634 ... G1SE76 41350250
    1070372 9ypo:X (3.0) BS02 rna N/A GO:0005634 ... G1SE76 41350250
    1070373 9ypo:XX (3.0) BS01 rna N/A GO:0003735 ... G1SZ47 41350250
    1070374 9ypo:Y (3.0) BS01 rna N/A GO:0003735 ... G1SQH0 41350250
    1070375 9ypo:Y (3.0) BS02 rna N/A GO:0003735 ... G1SQH0 41350250
    1070376 9ypo:YY (3.0) BS01 rna N/A GO:0022627 ... G1T3D8 41350250
    1070377 9ypo:Z (3.0) BS01 rna N/A GO:0002181 ... G1TXF6 41350250
    1070378 9ypo:ZZ (3.0) BS01 rna N/A GO:0003735 ... G1TDB3 41350250
    1070379 9ypo:a (3.0) BS01 rna N/A GO:0003735 ... G1SNY0 41350250
    1070380 9ypo:aa (3.0) BS01 rna N/A GO:0003729 ... G1TFE8 41350250
    1070381 9ypo:b (3.0) BS01 rna N/A GO:0002181 ... G1SGR6 41350250
    1070382 9ypo:bb (3.0) BS01 rna N/A GO:0003735 ... G1TZ76 41350250
    1070383 9ypo:c (3.0) BS01 rna N/A GO:0005737 ... G1TDL2 41350250
    1070384 9ypo:cc (3.0) BS01 rna N/A GO:0000028 ... G1TIB4 41350250
    1070385 9ypo:d (3.0) BS01 rna N/A GO:0002181 ... G1SHG0 41350250
    1070386 9ypo:dd (3.0) BS01 rna N/A GO:0002181 ... G1U7M4 41350250
    1070387 9ypo:dd (3.0) BS02 ZN N/A GO:0002181 ... G1U7M4 41350250
    1070388 9ypo:e (3.0) BS01 rna N/A GO:0005737 ... A0AAA9WVN6 41350250
    1070389 9ypo:ee (3.0) BS01 rna N/A GO:0005634 ... G1T8A2 41350250
    1070390 9ypo:ee (3.0) BS02 rna N/A GO:0005634 ... G1T8A2 41350250
    1070391 9ypo:f (3.0) BS01 rna N/A GO:0005737 ... G1SF08 41350250
    1070392 9ypo:ff (3.0) BS01 rna N/A GO:0003735 ... G1SK22 41350250
    1070393 9ypo:g (3.0) BS01 rna N/A GO:0005737 ... G1TXG5 41350250
    1070394 9ypo:g (3.0) BS02 ZN N/A GO:0005737 ... G1TXG5 41350250
    1070395 9ypo:gg (3.0) BS01 rna N/A GO:0001891 ... G1SJB4 41350250
    1070396 9ypo:h (3.0) BS01 rna N/A GO:0000463 ... G1SIT5 41350250
    1070397 9ypo:h (3.0) BS02 rna N/A GO:0000463 ... G1SIT5 41350250
    1070398 9ypo:i (3.0) BS01 rna N/A GO:0005737 ... G1TTQ5 41350250
    1070399 9ypo:j (3.0) BS01 rna N/A GO:0002181 ... U3KPD5 41350250
    1070400 9ypo:j (3.0) BS02 rna N/A GO:0002181 ... U3KPD5 41350250

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).