SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1070401 9ypo:j (3.0) BS03 ZN N/A GO:0002181 ... U3KPD5 41350250
    1070402 9ypo:jj (3.0) BS01 rna N/A GO:0000049 ... O00178 41350250
    1070403 9ypo:jj (3.0) BS02 rna N/A GO:0000049 ... O00178 41350250
    1070404 9ypo:jj (3.0) BS03 GTP N/A GO:0000049 ... O00178 41350250
    1070405 9ypo:jj (3.0) BS04 PHE N/A GO:0000049 ... O00178 41350250
    1070406 9ypo:jj (3.0) BS05 MG N/A GO:0000049 ... O00178 41350250
    1070407 9ypo:k (3.0) BS01 rna N/A GO:0003735 ... G1U3J0 41350250
    1070408 9ypo:l (3.0) BS01 rna N/A GO:0022625 ... G1TTN1 41350250
    1070409 9ypo:l (3.0) BS02 rna N/A GO:0022625 ... G1TTN1 41350250
    1070410 9ypo:m (3.0) BS01 rna N/A N/A P0DXC2 41350250
    1070411 9ypo:m (3.0) BS02 ZN N/A N/A P0DXC2 41350250
    1070412 9ypo:o (3.0) BS01 rna N/A GO:0005737 ... G1T040 41350250
    1070413 9ypo:o (3.0) BS02 rna N/A GO:0005737 ... G1T040 41350250
    1070414 9ypo:o (3.0) BS03 ZN N/A GO:0005737 ... G1T040 41350250
    1070415 9ypo:p (3.0) BS01 rna N/A GO:0005737 ... G1SY53 41350250
    1070416 9ypo:p (3.0) BS02 ZN N/A GO:0005737 ... G1SY53 41350250
    1070417 9ypo:r (3.0) BS01 rna N/A GO:0005737 ... G1U7L1 41350250
    1070418 9yps:A (3.0) BS01 rna N/A GO:0002181 ... G1TT27 41350250
    1070419 9yps:A (3.0) BS02 rna N/A GO:0002181 ... G1TT27 41350250
    1070420 9yps:AA (3.0) BS01 rna N/A GO:0000028 ... G1TLT8 41350250
    1070421 9yps:B (3.0) BS01 rna N/A GO:0003723 ... G1TL06 41350250
    1070422 9yps:BB (3.0) BS01 rna N/A GO:0003735 ... G1SS70 41350250
    1070423 9yps:C (3.0) BS01 rna N/A GO:0005737 ... G1SVW5 41350250
    1070424 9yps:C (3.0) BS02 rna N/A GO:0005737 ... G1SVW5 41350250
    1070425 9yps:CC (3.0) BS01 rna N/A N/A G1SWM1 41350250
    1070426 9yps:D (3.0) BS01 rna N/A GO:0000027 ... P19949 41350250
    1070427 9yps:D (3.0) BS02 rna N/A GO:0000027 ... P19949 41350250
    1070428 9yps:DD (3.0) BS01 rna N/A GO:0003735 ... G1TNM3 41350250
    1070429 9yps:E (3.0) BS01 rna N/A GO:0000027 ... G1SKF7 41350250
    1070430 9yps:EE (3.0) BS01 rna N/A GO:0003723 ... G1TK17 41350250
    1070431 9yps:FF (3.0) BS01 rna N/A GO:0003735 ... G1TFM5 41350250
    1070432 9yps:FF (3.0) BS02 rna N/A GO:0003735 ... G1TFM5 41350250
    1070433 9yps:G (3.0) BS01 rna N/A GO:0005737 ... G1STW0 41350250
    1070434 9yps:G (3.0) BS02 rna N/A GO:0005737 ... G1STW0 41350250
    1070435 9yps:GG (3.0) BS01 rna N/A GO:0003735 ... G1TM55 41350250
    1070436 9yps:H (3.0) BS01 rna N/A GO:0002181 ... G1SWI6 41350250
    1070437 9yps:HH (3.0) BS01 rna N/A GO:0003735 ... G1SVB0 41350250
    1070438 9yps:I (3.0) BS01 rna N/A GO:0005737 ... B7NZQ2 41350250
    1070439 9yps:I (3.0) BS02 rna N/A GO:0005737 ... B7NZQ2 41350250
    1070440 9yps:II (3.0) BS01 rna N/A GO:0003735 ... G1TJW1 41350250
    1070441 9yps:II (3.0) BS02 rna N/A GO:0003735 ... G1TJW1 41350250
    1070442 9yps:J (3.0) BS01 rna N/A GO:0005730 ... G1TUB8 41350250
    1070443 9yps:J (3.0) BS02 rna N/A GO:0005730 ... G1TUB8 41350250
    1070444 9yps:J (3.0) BS03 rna N/A GO:0005730 ... G1TUB8 41350250
    1070445 9yps:JJ (3.0) BS01 rna N/A GO:0003735 ... B7NZS8 41350250
    1070446 9yps:K (3.0) BS01 rna N/A GO:0000463 ... G1TUB1 41350250
    1070447 9yps:K (3.0) BS02 rna N/A GO:0000463 ... G1TUB1 41350250
    1070448 9yps:KK (3.0) BS01 rna N/A GO:0003723 ... G1T168 41350250
    1070449 9yps:L (3.0) BS01 rna N/A N/A N/A 41350250
    1070450 9yps:L (3.0) BS02 rna N/A N/A N/A 41350250
    1070451 9yps:LL (3.0) BS01 rna N/A GO:0003735 ... G1TRM4 41350250
    1070452 9yps:M (3.0) BS01 rna N/A GO:0003723 ... G1SZ12 41350250
    1070453 9yps:MM (3.0) BS01 rna N/A GO:0003735 ... G1SFR8 41350250
    1070454 9yps:N (3.0) BS01 rna N/A GO:0002181 ... G1T0C1 41350250
    1070455 9yps:N (3.0) BS02 rna N/A GO:0002181 ... G1T0C1 41350250
    1070456 9yps:NN (3.0) BS01 rna N/A GO:0003735 ... G1SP51 41350250
    1070457 9yps:O (3.0) BS01 rna N/A GO:0003729 ... G1TVS8 41350250
    1070458 9yps:OO (3.0) BS01 rna N/A GO:0003735 ... A0AAA9WYR1 41350250
    1070459 9yps:P (3.0) BS01 rna N/A GO:0002181 ... G1SCJ6 41350250
    1070460 9yps:P (3.0) BS02 rna N/A GO:0002181 ... G1SCJ6 41350250
    1070461 9yps:PP (3.0) BS01 rna N/A GO:0000028 ... G1U0Q2 41350250
    1070462 9yps:PP (3.0) BS02 rna N/A GO:0000028 ... G1U0Q2 41350250
    1070463 9yps:Q (3.0) BS01 rna N/A GO:0003723 ... G1TFE0 41350250
    1070464 9yps:QQ (3.0) BS01 rna N/A GO:0000462 ... G1SGX4 41350250
    1070465 9yps:R (3.0) BS01 rna N/A GO:0022625 ... G1TJR3 41350250
    1070466 9yps:R (3.0) BS02 rna N/A GO:0022625 ... G1TJR3 41350250
    1070467 9yps:RR (3.0) BS01 rna N/A GO:0003735 ... G1TU13 41350250
    1070468 9yps:S (3.0) BS01 rna N/A N/A G1TTY7 41350250
    1070469 9yps:S (3.0) BS02 rna N/A N/A G1TTY7 41350250
    1070470 9yps:SS (3.0) BS01 rna N/A GO:0003735 ... G1TPG3 41350250
    1070471 9yps:SS (3.0) BS02 rna N/A GO:0003735 ... G1TPG3 41350250
    1070472 9yps:T (3.0) BS01 rna N/A GO:0005737 ... G1SHQ2 41350250
    1070473 9yps:T (3.0) BS02 rna N/A GO:0005737 ... G1SHQ2 41350250
    1070474 9yps:TT (3.0) BS01 rna N/A GO:0000028 ... G1TN62 41350250
    1070475 9yps:U (3.0) BS01 rna N/A GO:0002181 ... G1TSG1 41350250
    1070476 9yps:UU (3.0) BS01 rna N/A GO:0003735 ... G1SIZ2 41350250
    1070477 9yps:V (3.0) BS01 rna N/A GO:0000122 ... G1T6D1 41350250
    1070478 9yps:W (3.0) BS01 rna N/A GO:0002181 ... G1SE28 41350250
    1070479 9yps:W (3.0) BS02 rna N/A GO:0002181 ... G1SE28 41350250
    1070480 9yps:WW (3.0) BS01 rna N/A GO:0003735 ... G1TG89 41350250
    1070481 9yps:X (3.0) BS01 rna N/A GO:0005634 ... G1SE76 41350250
    1070482 9yps:X (3.0) BS02 rna N/A GO:0005634 ... G1SE76 41350250
    1070483 9yps:XX (3.0) BS01 rna N/A GO:0003735 ... G1SZ47 41350250
    1070484 9yps:Y (3.0) BS01 rna N/A GO:0003735 ... G1SQH0 41350250
    1070485 9yps:Y (3.0) BS02 rna N/A GO:0003735 ... G1SQH0 41350250
    1070486 9yps:YY (3.0) BS01 rna N/A GO:0022627 ... G1T3D8 41350250
    1070487 9yps:Z (3.0) BS01 rna N/A GO:0002181 ... G1TXF6 41350250
    1070488 9yps:ZZ (3.0) BS01 rna N/A GO:0003735 ... G1TDB3 41350250
    1070489 9yps:a (3.0) BS01 rna N/A GO:0003735 ... G1SNY0 41350250
    1070490 9yps:aa (3.0) BS01 rna N/A GO:0003729 ... G1TFE8 41350250
    1070491 9yps:b (3.0) BS01 rna N/A GO:0002181 ... G1SGR6 41350250
    1070492 9yps:bb (3.0) BS01 rna N/A GO:0003735 ... G1TZ76 41350250
    1070493 9yps:c (3.0) BS01 rna N/A GO:0005737 ... G1TDL2 41350250
    1070494 9yps:cc (3.0) BS01 rna N/A GO:0000028 ... G1TIB4 41350250
    1070495 9yps:d (3.0) BS01 rna N/A GO:0002181 ... G1SHG0 41350250
    1070496 9yps:dd (3.0) BS01 rna N/A GO:0002181 ... G1U7M4 41350250
    1070497 9yps:dd (3.0) BS02 ZN N/A GO:0002181 ... G1U7M4 41350250
    1070498 9yps:e (3.0) BS01 rna N/A GO:0005737 ... A0AAA9WVN6 41350250
    1070499 9yps:ee (3.0) BS01 rna N/A GO:0005634 ... G1T8A2 41350250
    1070500 9yps:ee (3.0) BS02 rna N/A GO:0005634 ... G1T8A2 41350250
    1070501 9yps:f (3.0) BS01 rna N/A GO:0005737 ... G1SF08 41350250
    1070502 9yps:ff (3.0) BS01 rna N/A GO:0003735 ... G1SK22 41350250
    1070503 9yps:g (3.0) BS01 rna N/A GO:0005737 ... G1TXG5 41350250
    1070504 9yps:g (3.0) BS02 ZN N/A GO:0005737 ... G1TXG5 41350250
    1070505 9yps:gg (3.0) BS01 rna N/A GO:0001891 ... G1SJB4 41350250
    1070506 9yps:h (3.0) BS01 rna N/A GO:0000463 ... G1SIT5 41350250
    1070507 9yps:h (3.0) BS02 rna N/A GO:0000463 ... G1SIT5 41350250
    1070508 9yps:i (3.0) BS01 rna N/A GO:0005737 ... G1TTQ5 41350250
    1070509 9yps:j (3.0) BS01 rna N/A GO:0002181 ... U3KPD5 41350250
    1070510 9yps:j (3.0) BS02 rna N/A GO:0002181 ... U3KPD5 41350250
    1070511 9yps:j (3.0) BS03 ZN N/A GO:0002181 ... U3KPD5 41350250
    1070512 9yps:jj (3.0) BS01 rna N/A GO:0000049 ... O00178 41350250
    1070513 9yps:jj (3.0) BS02 rna N/A GO:0000049 ... O00178 41350250
    1070514 9yps:jj (3.0) BS03 GTP N/A GO:0000049 ... O00178 41350250
    1070515 9yps:jj (3.0) BS04 PHE N/A GO:0000049 ... O00178 41350250
    1070516 9yps:jj (3.0) BS05 MG N/A GO:0000049 ... O00178 41350250
    1070517 9yps:k (3.0) BS01 rna N/A GO:0003735 ... G1U3J0 41350250
    1070518 9yps:l (3.0) BS01 rna N/A GO:0022625 ... G1TTN1 41350250
    1070519 9yps:l (3.0) BS02 rna N/A GO:0022625 ... G1TTN1 41350250
    1070520 9yps:m (3.0) BS01 rna N/A N/A P0DXC2 41350250
    1070521 9yps:m (3.0) BS02 ZN N/A N/A P0DXC2 41350250
    1070522 9yps:o (3.0) BS01 rna N/A GO:0005737 ... G1T040 41350250
    1070523 9yps:o (3.0) BS02 rna N/A GO:0005737 ... G1T040 41350250
    1070524 9yps:o (3.0) BS03 ZN N/A GO:0005737 ... G1T040 41350250
    1070525 9yps:p (3.0) BS01 rna N/A GO:0005737 ... G1SY53 41350250
    1070526 9yps:p (3.0) BS02 ZN N/A GO:0005737 ... G1SY53 41350250
    1070527 9yps:r (3.0) BS01 rna N/A GO:0005737 ... G1U7L1 41350250
    1070528 9ypt:A (3.1) BS01 rna N/A GO:0002181 ... G1TT27 41350250
    1070529 9ypt:A (3.1) BS02 rna N/A GO:0002181 ... G1TT27 41350250
    1070530 9ypt:AA (3.1) BS01 rna N/A GO:0000028 ... G1TLT8 41350250
    1070531 9ypt:B (3.1) BS01 rna N/A GO:0003723 ... G1TL06 41350250
    1070532 9ypt:BB (3.1) BS01 rna N/A GO:0003735 ... G1SS70 41350250
    1070533 9ypt:C (3.1) BS01 rna N/A GO:0005737 ... G1SVW5 41350250
    1070534 9ypt:C (3.1) BS02 rna N/A GO:0005737 ... G1SVW5 41350250
    1070535 9ypt:CC (3.1) BS01 rna N/A N/A G1SWM1 41350250
    1070536 9ypt:D (3.1) BS01 rna N/A GO:0000027 ... P19949 41350250
    1070537 9ypt:D (3.1) BS02 rna N/A GO:0000027 ... P19949 41350250
    1070538 9ypt:DD (3.1) BS01 rna N/A GO:0003735 ... G1TNM3 41350250
    1070539 9ypt:E (3.1) BS01 rna N/A GO:0000027 ... G1SKF7 41350250
    1070540 9ypt:EE (3.1) BS01 rna N/A GO:0003723 ... G1TK17 41350250
    1070541 9ypt:FF (3.1) BS01 rna N/A GO:0003735 ... G1TFM5 41350250
    1070542 9ypt:FF (3.1) BS02 rna N/A GO:0003735 ... G1TFM5 41350250
    1070543 9ypt:G (3.1) BS01 rna N/A GO:0005737 ... G1STW0 41350250
    1070544 9ypt:G (3.1) BS02 rna N/A GO:0005737 ... G1STW0 41350250
    1070545 9ypt:GG (3.1) BS01 rna N/A GO:0003735 ... G1TM55 41350250
    1070546 9ypt:H (3.1) BS01 rna N/A GO:0002181 ... G1SWI6 41350250
    1070547 9ypt:HH (3.1) BS01 rna N/A GO:0003735 ... G1SVB0 41350250
    1070548 9ypt:I (3.1) BS01 rna N/A GO:0005737 ... B7NZQ2 41350250
    1070549 9ypt:I (3.1) BS02 rna N/A GO:0005737 ... B7NZQ2 41350250
    1070550 9ypt:II (3.1) BS01 rna N/A GO:0003735 ... G1TJW1 41350250
    1070551 9ypt:II (3.1) BS02 rna N/A GO:0003735 ... G1TJW1 41350250
    1070552 9ypt:J (3.1) BS01 rna N/A GO:0005730 ... G1TUB8 41350250
    1070553 9ypt:J (3.1) BS02 rna N/A GO:0005730 ... G1TUB8 41350250
    1070554 9ypt:J (3.1) BS03 rna N/A GO:0005730 ... G1TUB8 41350250
    1070555 9ypt:JJ (3.1) BS01 rna N/A GO:0003735 ... B7NZS8 41350250
    1070556 9ypt:K (3.1) BS01 rna N/A GO:0000463 ... G1TUB1 41350250
    1070557 9ypt:K (3.1) BS02 rna N/A GO:0000463 ... G1TUB1 41350250
    1070558 9ypt:KK (3.1) BS01 rna N/A GO:0003723 ... G1T168 41350250
    1070559 9ypt:L (3.1) BS01 rna N/A N/A N/A 41350250
    1070560 9ypt:L (3.1) BS02 rna N/A N/A N/A 41350250
    1070561 9ypt:LL (3.1) BS01 rna N/A GO:0003735 ... G1TRM4 41350250
    1070562 9ypt:M (3.1) BS01 rna N/A GO:0003723 ... G1SZ12 41350250
    1070563 9ypt:MM (3.1) BS01 rna N/A GO:0003735 ... G1SFR8 41350250
    1070564 9ypt:N (3.1) BS01 rna N/A GO:0002181 ... G1T0C1 41350250
    1070565 9ypt:N (3.1) BS02 rna N/A GO:0002181 ... G1T0C1 41350250
    1070566 9ypt:NN (3.1) BS01 rna N/A GO:0003735 ... G1SP51 41350250
    1070567 9ypt:O (3.1) BS01 rna N/A GO:0003729 ... G1TVS8 41350250
    1070568 9ypt:OO (3.1) BS01 rna N/A GO:0003735 ... A0AAA9WYR1 41350250
    1070569 9ypt:P (3.1) BS01 rna N/A GO:0002181 ... G1SCJ6 41350250
    1070570 9ypt:P (3.1) BS02 rna N/A GO:0002181 ... G1SCJ6 41350250
    1070571 9ypt:PP (3.1) BS01 rna N/A GO:0000028 ... G1U0Q2 41350250
    1070572 9ypt:PP (3.1) BS02 rna N/A GO:0000028 ... G1U0Q2 41350250
    1070573 9ypt:Q (3.1) BS01 rna N/A GO:0003723 ... G1TFE0 41350250
    1070574 9ypt:QQ (3.1) BS01 rna N/A GO:0000462 ... G1SGX4 41350250
    1070575 9ypt:R (3.1) BS01 rna N/A GO:0022625 ... G1TJR3 41350250
    1070576 9ypt:R (3.1) BS02 rna N/A GO:0022625 ... G1TJR3 41350250
    1070577 9ypt:RR (3.1) BS01 rna N/A GO:0003735 ... G1TU13 41350250
    1070578 9ypt:S (3.1) BS01 rna N/A N/A G1TTY7 41350250
    1070579 9ypt:S (3.1) BS02 rna N/A N/A G1TTY7 41350250
    1070580 9ypt:SS (3.1) BS01 rna N/A GO:0003735 ... G1TPG3 41350250
    1070581 9ypt:T (3.1) BS01 rna N/A GO:0005737 ... G1SHQ2 41350250
    1070582 9ypt:T (3.1) BS02 rna N/A GO:0005737 ... G1SHQ2 41350250
    1070583 9ypt:TT (3.1) BS01 rna N/A GO:0000028 ... G1TN62 41350250
    1070584 9ypt:U (3.1) BS01 rna N/A GO:0002181 ... G1TSG1 41350250
    1070585 9ypt:UU (3.1) BS01 rna N/A GO:0003735 ... G1SIZ2 41350250
    1070586 9ypt:V (3.1) BS01 rna N/A GO:0000122 ... G1T6D1 41350250
    1070587 9ypt:W (3.1) BS01 rna N/A GO:0002181 ... G1SE28 41350250
    1070588 9ypt:WW (3.1) BS01 rna N/A GO:0003735 ... G1TG89 41350250
    1070589 9ypt:X (3.1) BS01 rna N/A GO:0005634 ... G1SE76 41350250
    1070590 9ypt:X (3.1) BS02 rna N/A GO:0005634 ... G1SE76 41350250
    1070591 9ypt:XX (3.1) BS01 rna N/A GO:0003735 ... G1SZ47 41350250
    1070592 9ypt:Y (3.1) BS01 rna N/A GO:0003735 ... G1SQH0 41350250
    1070593 9ypt:Y (3.1) BS02 rna N/A GO:0003735 ... G1SQH0 41350250
    1070594 9ypt:YY (3.1) BS01 rna N/A GO:0022627 ... G1T3D8 41350250
    1070595 9ypt:Z (3.1) BS01 rna N/A GO:0002181 ... G1TXF6 41350250
    1070596 9ypt:ZZ (3.1) BS01 rna N/A GO:0003735 ... G1TDB3 41350250
    1070597 9ypt:a (3.1) BS01 rna N/A GO:0003735 ... G1SNY0 41350250
    1070598 9ypt:aa (3.1) BS01 rna N/A GO:0003729 ... G1TFE8 41350250
    1070599 9ypt:b (3.1) BS01 rna N/A GO:0002181 ... G1SGR6 41350250
    1070600 9ypt:bb (3.1) BS01 rna N/A GO:0003735 ... G1TZ76 41350250

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).