SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1070601 9ypt:c (3.1) BS01 rna N/A GO:0005737 ... G1TDL2 41350250
    1070602 9ypt:cc (3.1) BS01 rna N/A GO:0000028 ... G1TIB4 41350250
    1070603 9ypt:d (3.1) BS01 rna N/A GO:0002181 ... G1SHG0 41350250
    1070604 9ypt:dd (3.1) BS01 rna N/A GO:0002181 ... G1U7M4 41350250
    1070605 9ypt:dd (3.1) BS02 ZN N/A GO:0002181 ... G1U7M4 41350250
    1070606 9ypt:e (3.1) BS01 rna N/A GO:0005737 ... A0AAA9WVN6 41350250
    1070607 9ypt:ee (3.1) BS01 rna N/A GO:0005634 ... G1T8A2 41350250
    1070608 9ypt:ee (3.1) BS02 rna N/A GO:0005634 ... G1T8A2 41350250
    1070609 9ypt:f (3.1) BS01 rna N/A GO:0005737 ... G1SF08 41350250
    1070610 9ypt:ff (3.1) BS01 rna N/A GO:0003735 ... G1SK22 41350250
    1070611 9ypt:g (3.1) BS01 rna N/A GO:0005737 ... G1TXG5 41350250
    1070612 9ypt:g (3.1) BS02 ZN N/A GO:0005737 ... G1TXG5 41350250
    1070613 9ypt:gg (3.1) BS01 rna N/A GO:0001891 ... G1SJB4 41350250
    1070614 9ypt:h (3.1) BS01 rna N/A GO:0000463 ... G1SIT5 41350250
    1070615 9ypt:h (3.1) BS02 rna N/A GO:0000463 ... G1SIT5 41350250
    1070616 9ypt:i (3.1) BS01 rna N/A GO:0005737 ... G1TTQ5 41350250
    1070617 9ypt:j (3.1) BS01 rna N/A GO:0002181 ... U3KPD5 41350250
    1070618 9ypt:j (3.1) BS02 rna N/A GO:0002181 ... U3KPD5 41350250
    1070619 9ypt:j (3.1) BS03 ZN N/A GO:0002181 ... U3KPD5 41350250
    1070620 9ypt:jj (3.1) BS01 rna N/A GO:0000049 ... O00178 41350250
    1070621 9ypt:jj (3.1) BS02 rna N/A GO:0000049 ... O00178 41350250
    1070622 9ypt:jj (3.1) BS03 rna N/A GO:0000049 ... O00178 41350250
    1070623 9ypt:jj (3.1) BS04 GTP N/A GO:0000049 ... O00178 41350250
    1070624 9ypt:jj (3.1) BS05 PHE N/A GO:0000049 ... O00178 41350250
    1070625 9ypt:jj (3.1) BS06 MG N/A GO:0000049 ... O00178 41350250
    1070626 9ypt:k (3.1) BS01 rna N/A GO:0003735 ... G1U3J0 41350250
    1070627 9ypt:l (3.1) BS01 rna N/A GO:0022625 ... G1TTN1 41350250
    1070628 9ypt:l (3.1) BS02 rna N/A GO:0022625 ... G1TTN1 41350250
    1070629 9ypt:m (3.1) BS01 rna N/A N/A P0DXC2 41350250
    1070630 9ypt:m (3.1) BS02 ZN N/A N/A P0DXC2 41350250
    1070631 9ypt:o (3.1) BS01 rna N/A GO:0005737 ... G1T040 41350250
    1070632 9ypt:o (3.1) BS02 rna N/A GO:0005737 ... G1T040 41350250
    1070633 9ypt:o (3.1) BS03 ZN N/A GO:0005737 ... G1T040 41350250
    1070634 9ypt:p (3.1) BS01 rna N/A GO:0005737 ... G1SY53 41350250
    1070635 9ypt:p (3.1) BS02 ZN N/A GO:0005737 ... G1SY53 41350250
    1070636 9ypt:r (3.1) BS01 rna N/A GO:0005737 ... G1U7L1 41350250
    1070637 9ypv:A (3.0) BS01 rna N/A GO:0002181 ... G1TT27 41350250
    1070638 9ypv:A (3.0) BS02 rna N/A GO:0002181 ... G1TT27 41350250
    1070639 9ypv:AA (3.0) BS01 rna N/A GO:0000028 ... G1TLT8 41350250
    1070640 9ypv:B (3.0) BS01 rna N/A GO:0003723 ... G1TL06 41350250
    1070641 9ypv:BB (3.0) BS01 rna N/A GO:0003735 ... G1SS70 41350250
    1070642 9ypv:C (3.0) BS01 rna N/A GO:0005737 ... G1SVW5 41350250
    1070643 9ypv:C (3.0) BS02 rna N/A GO:0005737 ... G1SVW5 41350250
    1070644 9ypv:CC (3.0) BS01 rna N/A N/A G1SWM1 41350250
    1070645 9ypv:D (3.0) BS01 rna N/A GO:0000027 ... P19949 41350250
    1070646 9ypv:D (3.0) BS02 rna N/A GO:0000027 ... P19949 41350250
    1070647 9ypv:DD (3.0) BS01 rna N/A GO:0003735 ... G1TNM3 41350250
    1070648 9ypv:E (3.0) BS01 rna N/A GO:0000027 ... G1SKF7 41350250
    1070649 9ypv:EE (3.0) BS01 rna N/A GO:0003723 ... G1TK17 41350250
    1070650 9ypv:FF (3.0) BS01 rna N/A GO:0003735 ... G1TFM5 41350250
    1070651 9ypv:FF (3.0) BS02 rna N/A GO:0003735 ... G1TFM5 41350250
    1070652 9ypv:G (3.0) BS01 rna N/A GO:0005737 ... G1STW0 41350250
    1070653 9ypv:G (3.0) BS02 rna N/A GO:0005737 ... G1STW0 41350250
    1070654 9ypv:GG (3.0) BS01 rna N/A GO:0003735 ... G1TM55 41350250
    1070655 9ypv:H (3.0) BS01 rna N/A GO:0002181 ... G1SWI6 41350250
    1070656 9ypv:HH (3.0) BS01 rna N/A GO:0003735 ... G1SVB0 41350250
    1070657 9ypv:I (3.0) BS01 rna N/A GO:0005737 ... B7NZQ2 41350250
    1070658 9ypv:I (3.0) BS02 rna N/A GO:0005737 ... B7NZQ2 41350250
    1070659 9ypv:II (3.0) BS01 rna N/A GO:0003735 ... G1TJW1 41350250
    1070660 9ypv:II (3.0) BS02 rna N/A GO:0003735 ... G1TJW1 41350250
    1070661 9ypv:J (3.0) BS01 rna N/A GO:0005730 ... G1TUB8 41350250
    1070662 9ypv:J (3.0) BS02 rna N/A GO:0005730 ... G1TUB8 41350250
    1070663 9ypv:J (3.0) BS03 rna N/A GO:0005730 ... G1TUB8 41350250
    1070664 9ypv:JJ (3.0) BS01 rna N/A GO:0003735 ... B7NZS8 41350250
    1070665 9ypv:K (3.0) BS01 rna N/A GO:0000463 ... G1TUB1 41350250
    1070666 9ypv:K (3.0) BS02 rna N/A GO:0000463 ... G1TUB1 41350250
    1070667 9ypv:KK (3.0) BS01 rna N/A GO:0003723 ... G1T168 41350250
    1070668 9ypv:L (3.0) BS01 rna N/A N/A N/A 41350250
    1070669 9ypv:L (3.0) BS02 rna N/A N/A N/A 41350250
    1070670 9ypv:LL (3.0) BS01 rna N/A GO:0003735 ... G1TRM4 41350250
    1070671 9ypv:M (3.0) BS01 rna N/A GO:0003723 ... G1SZ12 41350250
    1070672 9ypv:MM (3.0) BS01 rna N/A GO:0003735 ... G1SFR8 41350250
    1070673 9ypv:N (3.0) BS01 rna N/A GO:0002181 ... G1T0C1 41350250
    1070674 9ypv:N (3.0) BS02 rna N/A GO:0002181 ... G1T0C1 41350250
    1070675 9ypv:NN (3.0) BS01 rna N/A GO:0003735 ... G1SP51 41350250
    1070676 9ypv:NN (3.0) BS02 rna N/A GO:0003735 ... G1SP51 41350250
    1070677 9ypv:O (3.0) BS01 rna N/A GO:0003729 ... G1TVS8 41350250
    1070678 9ypv:OO (3.0) BS01 rna N/A GO:0003735 ... A0AAA9WYR1 41350250
    1070679 9ypv:P (3.0) BS01 rna N/A GO:0002181 ... G1SCJ6 41350250
    1070680 9ypv:P (3.0) BS02 rna N/A GO:0002181 ... G1SCJ6 41350250
    1070681 9ypv:PP (3.0) BS01 rna N/A GO:0000028 ... G1U0Q2 41350250
    1070682 9ypv:PP (3.0) BS02 rna N/A GO:0000028 ... G1U0Q2 41350250
    1070683 9ypv:Q (3.0) BS01 rna N/A GO:0003723 ... G1TFE0 41350250
    1070684 9ypv:QQ (3.0) BS01 rna N/A GO:0000462 ... G1SGX4 41350250
    1070685 9ypv:R (3.0) BS01 rna N/A GO:0022625 ... G1TJR3 41350250
    1070686 9ypv:R (3.0) BS02 rna N/A GO:0022625 ... G1TJR3 41350250
    1070687 9ypv:RR (3.0) BS01 rna N/A GO:0003735 ... G1TU13 41350250
    1070688 9ypv:S (3.0) BS01 rna N/A N/A G1TTY7 41350250
    1070689 9ypv:S (3.0) BS02 rna N/A N/A G1TTY7 41350250
    1070690 9ypv:SS (3.0) BS01 rna N/A GO:0003735 ... G1TPG3 41350250
    1070691 9ypv:T (3.0) BS01 rna N/A GO:0005737 ... G1SHQ2 41350250
    1070692 9ypv:T (3.0) BS02 rna N/A GO:0005737 ... G1SHQ2 41350250
    1070693 9ypv:TT (3.0) BS01 rna N/A GO:0000028 ... G1TN62 41350250
    1070694 9ypv:U (3.0) BS01 rna N/A GO:0002181 ... G1TSG1 41350250
    1070695 9ypv:UU (3.0) BS01 rna N/A GO:0003735 ... G1SIZ2 41350250
    1070696 9ypv:V (3.0) BS01 rna N/A GO:0000122 ... G1T6D1 41350250
    1070697 9ypv:W (3.0) BS01 rna N/A GO:0002181 ... G1SE28 41350250
    1070698 9ypv:WW (3.0) BS01 rna N/A GO:0003735 ... G1TG89 41350250
    1070699 9ypv:X (3.0) BS01 rna N/A GO:0005634 ... G1SE76 41350250
    1070700 9ypv:X (3.0) BS02 rna N/A GO:0005634 ... G1SE76 41350250
    1070701 9ypv:XX (3.0) BS01 rna N/A GO:0003735 ... G1SZ47 41350250
    1070702 9ypv:Y (3.0) BS01 rna N/A GO:0003735 ... G1SQH0 41350250
    1070703 9ypv:Y (3.0) BS02 rna N/A GO:0003735 ... G1SQH0 41350250
    1070704 9ypv:YY (3.0) BS01 rna N/A GO:0022627 ... G1T3D8 41350250
    1070705 9ypv:Z (3.0) BS01 rna N/A GO:0002181 ... G1TXF6 41350250
    1070706 9ypv:ZZ (3.0) BS01 rna N/A GO:0003735 ... G1TDB3 41350250
    1070707 9ypv:a (3.0) BS01 rna N/A GO:0003735 ... G1SNY0 41350250
    1070708 9ypv:aa (3.0) BS01 rna N/A GO:0003729 ... G1TFE8 41350250
    1070709 9ypv:b (3.0) BS01 rna N/A GO:0002181 ... G1SGR6 41350250
    1070710 9ypv:bb (3.0) BS01 rna N/A GO:0003735 ... G1TZ76 41350250
    1070711 9ypv:c (3.0) BS01 rna N/A GO:0005737 ... G1TDL2 41350250
    1070712 9ypv:cc (3.0) BS01 rna N/A GO:0000028 ... G1TIB4 41350250
    1070713 9ypv:d (3.0) BS01 rna N/A GO:0002181 ... G1SHG0 41350250
    1070714 9ypv:dd (3.0) BS01 rna N/A GO:0002181 ... G1U7M4 41350250
    1070715 9ypv:dd (3.0) BS02 ZN N/A GO:0002181 ... G1U7M4 41350250
    1070716 9ypv:e (3.0) BS01 rna N/A GO:0005737 ... A0AAA9WVN6 41350250
    1070717 9ypv:ee (3.0) BS01 rna N/A GO:0005634 ... G1T8A2 41350250
    1070718 9ypv:ee (3.0) BS02 rna N/A GO:0005634 ... G1T8A2 41350250
    1070719 9ypv:f (3.0) BS01 rna N/A GO:0005737 ... G1SF08 41350250
    1070720 9ypv:ff (3.0) BS01 rna N/A GO:0003735 ... G1SK22 41350250
    1070721 9ypv:g (3.0) BS01 rna N/A GO:0005737 ... G1TXG5 41350250
    1070722 9ypv:g (3.0) BS02 ZN N/A GO:0005737 ... G1TXG5 41350250
    1070723 9ypv:gg (3.0) BS01 rna N/A GO:0001891 ... G1SJB4 41350250
    1070724 9ypv:h (3.0) BS01 rna N/A GO:0000463 ... G1SIT5 41350250
    1070725 9ypv:h (3.0) BS02 rna N/A GO:0000463 ... G1SIT5 41350250
    1070726 9ypv:i (3.0) BS01 rna N/A GO:0005737 ... G1TTQ5 41350250
    1070727 9ypv:j (3.0) BS01 rna N/A GO:0002181 ... U3KPD5 41350250
    1070728 9ypv:j (3.0) BS02 rna N/A GO:0002181 ... U3KPD5 41350250
    1070729 9ypv:j (3.0) BS03 ZN N/A GO:0002181 ... U3KPD5 41350250
    1070730 9ypv:jj (3.0) BS01 rna N/A GO:0000049 ... O00178 41350250
    1070731 9ypv:jj (3.0) BS02 rna N/A GO:0000049 ... O00178 41350250
    1070732 9ypv:jj (3.0) BS03 GTP N/A GO:0000049 ... O00178 41350250
    1070733 9ypv:jj (3.0) BS04 PHE N/A GO:0000049 ... O00178 41350250
    1070734 9ypv:jj (3.0) BS05 MG N/A GO:0000049 ... O00178 41350250
    1070735 9ypv:k (3.0) BS01 rna N/A GO:0003735 ... G1U3J0 41350250
    1070736 9ypv:l (3.0) BS01 rna N/A GO:0022625 ... G1TTN1 41350250
    1070737 9ypv:l (3.0) BS02 rna N/A GO:0022625 ... G1TTN1 41350250
    1070738 9ypv:m (3.0) BS01 rna N/A N/A P0DXC2 41350250
    1070739 9ypv:m (3.0) BS02 ZN N/A N/A P0DXC2 41350250
    1070740 9ypv:o (3.0) BS01 rna N/A GO:0005737 ... G1T040 41350250
    1070741 9ypv:o (3.0) BS02 rna N/A GO:0005737 ... G1T040 41350250
    1070742 9ypv:o (3.0) BS03 ZN N/A GO:0005737 ... G1T040 41350250
    1070743 9ypv:o (3.0) BS04 ATP N/A GO:0005737 ... G1T040 41350250
    1070744 9ypv:p (3.0) BS01 rna N/A GO:0005737 ... G1SY53 41350250
    1070745 9ypv:p (3.0) BS02 ZN N/A GO:0005737 ... G1SY53 41350250
    1070746 9ypv:r (3.0) BS01 rna N/A GO:0005737 ... G1U7L1 41350250
    1070747 9ypw:A (2.9) BS01 rna N/A GO:0002181 ... G1TT27 41350250
    1070748 9ypw:A (2.9) BS02 rna N/A GO:0002181 ... G1TT27 41350250
    1070749 9ypw:AA (2.9) BS01 rna N/A GO:0000028 ... G1TLT8 41350250
    1070750 9ypw:B (2.9) BS01 rna N/A GO:0003723 ... G1TL06 41350250
    1070751 9ypw:BB (2.9) BS01 rna N/A GO:0003735 ... G1SS70 41350250
    1070752 9ypw:C (2.9) BS01 rna N/A GO:0005737 ... G1SVW5 41350250
    1070753 9ypw:C (2.9) BS02 rna N/A GO:0005737 ... G1SVW5 41350250
    1070754 9ypw:CC (2.9) BS01 rna N/A N/A G1SWM1 41350250
    1070755 9ypw:D (2.9) BS01 rna N/A GO:0000027 ... P19949 41350250
    1070756 9ypw:D (2.9) BS02 rna N/A GO:0000027 ... P19949 41350250
    1070757 9ypw:DD (2.9) BS01 rna N/A GO:0003735 ... G1TNM3 41350250
    1070758 9ypw:E (2.9) BS01 rna N/A GO:0000027 ... G1SKF7 41350250
    1070759 9ypw:EE (2.9) BS01 rna N/A GO:0003723 ... G1TK17 41350250
    1070760 9ypw:FF (2.9) BS01 rna N/A GO:0003735 ... G1TFM5 41350250
    1070761 9ypw:FF (2.9) BS02 rna N/A GO:0003735 ... G1TFM5 41350250
    1070762 9ypw:G (2.9) BS01 rna N/A GO:0005737 ... G1STW0 41350250
    1070763 9ypw:G (2.9) BS02 rna N/A GO:0005737 ... G1STW0 41350250
    1070764 9ypw:GG (2.9) BS01 rna N/A GO:0003735 ... G1TM55 41350250
    1070765 9ypw:H (2.9) BS01 rna N/A GO:0002181 ... G1SWI6 41350250
    1070766 9ypw:HH (2.9) BS01 rna N/A GO:0003735 ... G1SVB0 41350250
    1070767 9ypw:I (2.9) BS01 rna N/A GO:0005737 ... B7NZQ2 41350250
    1070768 9ypw:I (2.9) BS02 rna N/A GO:0005737 ... B7NZQ2 41350250
    1070769 9ypw:II (2.9) BS01 rna N/A GO:0003735 ... G1TJW1 41350250
    1070770 9ypw:II (2.9) BS02 rna N/A GO:0003735 ... G1TJW1 41350250
    1070771 9ypw:J (2.9) BS01 rna N/A GO:0005730 ... G1TUB8 41350250
    1070772 9ypw:J (2.9) BS02 rna N/A GO:0005730 ... G1TUB8 41350250
    1070773 9ypw:J (2.9) BS03 rna N/A GO:0005730 ... G1TUB8 41350250
    1070774 9ypw:JJ (2.9) BS01 rna N/A GO:0003735 ... B7NZS8 41350250
    1070775 9ypw:K (2.9) BS01 rna N/A GO:0000463 ... G1TUB1 41350250
    1070776 9ypw:K (2.9) BS02 rna N/A GO:0000463 ... G1TUB1 41350250
    1070777 9ypw:KK (2.9) BS01 rna N/A GO:0003723 ... G1T168 41350250
    1070778 9ypw:L (2.9) BS01 rna N/A N/A N/A 41350250
    1070779 9ypw:L (2.9) BS02 rna N/A N/A N/A 41350250
    1070780 9ypw:LL (2.9) BS01 rna N/A GO:0003735 ... G1TRM4 41350250
    1070781 9ypw:M (2.9) BS01 rna N/A GO:0003723 ... G1SZ12 41350250
    1070782 9ypw:MM (2.9) BS01 rna N/A GO:0003735 ... G1SFR8 41350250
    1070783 9ypw:N (2.9) BS01 rna N/A GO:0002181 ... G1T0C1 41350250
    1070784 9ypw:N (2.9) BS02 rna N/A GO:0002181 ... G1T0C1 41350250
    1070785 9ypw:NN (2.9) BS01 rna N/A GO:0003735 ... G1SP51 41350250
    1070786 9ypw:O (2.9) BS01 rna N/A GO:0003729 ... G1TVS8 41350250
    1070787 9ypw:OO (2.9) BS01 rna N/A GO:0003735 ... G1T1F0 41350250
    1070788 9ypw:P (2.9) BS01 rna N/A GO:0002181 ... G1SCJ6 41350250
    1070789 9ypw:P (2.9) BS02 rna N/A GO:0002181 ... G1SCJ6 41350250
    1070790 9ypw:PP (2.9) BS01 rna N/A GO:0000028 ... G1U0Q2 41350250
    1070791 9ypw:PP (2.9) BS02 rna N/A GO:0000028 ... G1U0Q2 41350250
    1070792 9ypw:Q (2.9) BS01 rna N/A GO:0003723 ... G1TFE0 41350250
    1070793 9ypw:QQ (2.9) BS01 rna N/A GO:0000462 ... G1SGX4 41350250
    1070794 9ypw:R (2.9) BS01 rna N/A GO:0022625 ... G1TJR3 41350250
    1070795 9ypw:R (2.9) BS02 rna N/A GO:0022625 ... G1TJR3 41350250
    1070796 9ypw:RR (2.9) BS01 rna N/A GO:0003735 ... G1TU13 41350250
    1070797 9ypw:S (2.9) BS01 rna N/A N/A G1TTY7 41350250
    1070798 9ypw:S (2.9) BS02 rna N/A N/A G1TTY7 41350250
    1070799 9ypw:SS (2.9) BS01 rna N/A GO:0003735 ... G1TPG3 41350250
    1070800 9ypw:SS (2.9) BS02 rna N/A GO:0003735 ... G1TPG3 41350250

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).